-
3
-
-
0036428782
-
-
B. Zagrovic, C. D. Snow, M. R. Shirts, and V. S. Pande, J. Mol. Biol. 323, 927 (2002).
-
(2002)
J. Mol. Biol.
, vol.323
, pp. 927
-
-
Zagrovic, B.1
Snow, C.D.2
Shirts, M.R.3
Pande, V.S.4
-
4
-
-
2342448436
-
-
Y. M. Rhee, E. J. Sorin, G. Jayachandran, E. Lindahl, and V. S. Pande, Proc. Natl. Acad. Sci. U.S.A. 101, 6456 (2004).
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 6456
-
-
Rhee, Y.M.1
Sorin, E.J.2
Jayachandran, G.3
Lindahl, E.4
Pande, V.S.5
-
7
-
-
18744366086
-
-
M. Andrec, A. K. Felts, E. Gallicchio, and R. M. Levy, Proc. Natl. Acad. Sci. U.S.A. 102, 6801 (2005).
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 6801
-
-
Andrec, M.1
Felts, A.K.2
Gallicchio, E.3
Levy, R.M.4
-
11
-
-
0038288925
-
-
M. Wang, Y. Tang, S. Sato, L. Vugmeyster, C. J. McKnight, and D. P. Raleigh, J. Am. Chem. Soc. 125, 6032 (2003).
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 6032
-
-
Wang, M.1
Tang, Y.2
Sato, S.3
Vugmeyster, L.4
McKnight, C.J.5
Raleigh, D.P.6
-
12
-
-
0036892356
-
-
M.-Y. Shen and K. F. Freed, Proteins: Struct., Funct., Genet. 49, 439 (2002).
-
(2002)
Proteins: Struct., Funct., Genet.
, vol.49
, pp. 439
-
-
Shen, M.-Y.1
Freed, K.F.2
-
16
-
-
33646415982
-
-
0021-9606 10.1063/1.1999637
-
H. Fujitani, Y. Tanida, M. Ito, G. Jayachandran, C. D. Snow, M. R. Shirts, E. J. Sorin, and V. S. Pande, J. Chem. Phys. 0021-9606 10.1063/1.1999637 123, 084108 (2005); E. J. Sorin and V. S. Pande, Biophys. J. 88, 2472 (2005).
-
(2005)
J. Chem. Phys.
, vol.123
, pp. 084108
-
-
Fujitani, H.1
Tanida, Y.2
Ito, M.3
Jayachandran, G.4
Snow, C.D.5
Shirts, M.R.6
Sorin, E.J.7
Pande, V.S.8
-
17
-
-
20544435097
-
-
H. Fujitani, Y. Tanida, M. Ito, G. Jayachandran, C. D. Snow, M. R. Shirts, E. J. Sorin, and V. S. Pande, J. Chem. Phys. 0021-9606 10.1063/1.1999637 123, 084108 (2005); E. J. Sorin and V. S. Pande, Biophys. J. 88, 2472 (2005).
-
(2005)
Biophys. J.
, vol.88
, pp. 2472
-
-
Sorin, E.J.1
Pande, V.S.2
-
18
-
-
0004016501
-
-
W. L. Jorgensen, J. Chandrasekhar, J. D. Madura, R. W. Impey, and M. L. Klein, J. Chem. Phys. 79, 926 (1983).
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
19
-
-
33750587438
-
-
H. J. C. Berendsen, J. P. M. Postma, W. F. van Gunsteren, A. Dinola, and J. R. Haak, J. Chem. Phys. 81, 3684 (1984).
-
(1984)
J. Chem. Phys.
, vol.81
, pp. 3684
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Van Gunsteren, W.F.3
Dinola, A.4
Haak, J.R.5
-
20
-
-
0000388705
-
-
B. Hess, H. Bekker, H. J. C. Berendsen, and J. G. E. M. Fraaije, J. Comput. Chem. 18, 1463 (1997).
-
(1997)
J. Comput. Chem.
, vol.18
, pp. 1463
-
-
Hess, B.1
Bekker, H.2
Berendsen, H.J.C.3
Fraaije, J.G.E.M.4
-
22
-
-
0029011701
-
-
W. D. Cornell, P. Cieplak, C. I. Barly, I. R. Gould, K. M. Merz, D. M. Ferguson, D. C. Spellmeyer, T. Fox, J. W. Caldwell, and P. A. Kollman, J. Am. Chem. Soc. 117, 5179 (1995).
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 5179
-
-
Cornell, W.D.1
Cieplak, P.2
Barly, C.I.3
Gould, I.R.4
Merz, K.M.5
Ferguson, D.M.6
Spellmeyer, D.C.7
Fox, T.8
Caldwell, J.W.9
Kollman, P.A.10
-
26
-
-
0036394906
-
-
B. Zagrovic, C. D. Snow, S. Khaliq, M. R. Shirts, and V. S. Pande, J. Mol. Biol. 323, 153 (2002).
-
(2002)
J. Mol. Biol.
, vol.323
, pp. 153
-
-
Zagrovic, B.1
Snow, C.D.2
Khaliq, S.3
Shirts, M.R.4
Pande, V.S.5
-
27
-
-
14744302714
-
-
M. Buscaglia, J. Kubelka, W. A. Eaton, and J. Hofrichter, J. Mol. Biol. 347, 657 (2005).
-
(2005)
J. Mol. Biol.
, vol.347
, pp. 657
-
-
Buscaglia, M.1
Kubelka, J.2
Eaton, W.A.3
Hofrichter, J.4
-
28
-
-
84858871779
-
-
http://dasher.wustl.edu/tinker/
-
-
-
-
29
-
-
0003867061
-
-
2nd ed. (Prentice-Hall, Englewood Cliffs, NJ
-
A. Leach, Molecular Modeling, 2nd ed. (Prentice-Hall, Englewood Cliffs, NJ, 2001).
-
(2001)
Molecular Modeling
-
-
Leach, A.1
-
32
-
-
84858879716
-
-
http://www-unix.mcs.anl.gov/mpi/
-
-
-
-
35
-
-
0036217783
-
-
0006-3495
-
M.-Y. Shen and K. F. Freed, Biophys. J. 0006-3495 82, 1791 (2002); M. W. Mahoney and W. L. Jorgensen, J. Chem. Phys. 114, 363 (2001).
-
(2002)
Biophys. J.
, vol.82
, pp. 1791
-
-
Shen, M.-Y.1
Freed, K.F.2
-
37
-
-
33646428973
-
-
Y. M. Rhee and V. S. Pande, Berkeley Mini Statistical Mechanics Meeting, Berkeley, CA, 2005 (private communication).
-
-
-
Rhee, Y.M.1
Pande, V.S.2
-
40
-
-
0000729781
-
-
C. Dellago, P. G. Bolhuis, F. S. Csajka, and D. Chandler, J. Chem. Phys. 108, 1964 (1998).
-
(1998)
J. Chem. Phys.
, vol.108
, pp. 1964
-
-
Dellago, C.1
Bolhuis, P.G.2
Csajka, F.S.3
Chandler, D.4
|