-
1
-
-
0034746959
-
The bacterial flora in inflammatory bowel disease: Current insights in pathogenesis and the influence of antibiotics and probiotics
-
Linskens R.K., Huijsdens X.W., Savelkoul P.H.M., Vandenbroucke-Grauls C.M.J.E., Meuwissen S.G.M. The bacterial flora in inflammatory bowel disease: current insights in pathogenesis and the influence of antibiotics and probiotics. Scand. J. Gastroenterol. 36(Suppl. 234):2001;29-40
-
(2001)
Scand. J. Gastroenterol.
, vol.36
, Issue.SUPPL. 234
, pp. 29-40
-
-
Linskens, R.K.1
Huijsdens, X.W.2
Savelkoul, P.H.M.3
Vandenbroucke-Grauls, C.M.J.E.4
Meuwissen, S.G.M.5
-
2
-
-
0035116091
-
Inflammatory bowel disease: Immunodiagnostics, immunotherapeutics and ecotherapeutics
-
Shanahan F. Inflammatory bowel disease: immunodiagnostics, immunotherapeutics and ecotherapeutics. Gastroenterology. 120:2001;622-635
-
(2001)
Gastroenterology
, vol.120
, pp. 622-635
-
-
Shanahan, F.1
-
3
-
-
0035978651
-
Association of NOD2 leucine-rich repeat variants with susceptibility to Crohn's disease
-
Hugot J.P., Chamaillard M., Zouali H., Lesage S., Cézard J.P., Belaiches J., Almer S., Tysk C., O'Morain C.A., Gassull M., Binder V., Finkel Y., Cortot A., Modigliani R., Laurent-Puig P., Gower-Rousseau C., Macry J., Colombel J.F., Sahbatou M., Thomas G. Association of NOD2 leucine-rich repeat variants with susceptibility to Crohn's disease. Nature. 411:2001;599-603
-
(2001)
Nature
, vol.411
, pp. 599-603
-
-
Hugot, J.P.1
Chamaillard, M.2
Zouali, H.3
Lesage, S.4
Cézard, J.P.5
Belaiches, J.6
Almer, S.7
Tysk, C.8
O'Morain, C.A.9
Gassull, M.10
Binder, V.11
Finkel, Y.12
Cortot, A.13
Modigliani, R.14
Laurent-Puig, P.15
Gower-Rousseau, C.16
MacRy, J.17
Colombel, J.F.18
Sahbatou, M.19
Thomas, G.20
more..
-
4
-
-
0035978533
-
A frameshift mutation in NOD2 associated with susceptibility to Crohn's disease
-
Ogura Y., Bonen D.K., Inohara N., Nicolae D.L., Chen F.F., Ramos R., Britton H., Moran T., Karaliuskas R., Duerr R.H., Achkar J.P., Brant S.R., Bayless T.M., Kirschner B.S., Hanauer S.B., Nunez G., Cho J.H. A frameshift mutation in NOD2 associated with susceptibility to Crohn's disease. Nature. 411:2001;603-606
-
(2001)
Nature
, vol.411
, pp. 603-606
-
-
Ogura, Y.1
Bonen, D.K.2
Inohara, N.3
Nicolae, D.L.4
Chen, F.F.5
Ramos, R.6
Britton, H.7
Moran, T.8
Karaliuskas, R.9
Duerr, R.H.10
Achkar, J.P.11
Brant, S.R.12
Bayless, T.M.13
Kirschner, B.S.14
Hanauer, S.B.15
Nunez, G.16
Cho, J.H.17
-
5
-
-
0020960851
-
Anaerobic gram-negative faecal flora in patients with Crohn's disease and healthy subjects
-
Ruseler-van Embden J.G., Both-Patoir H.C. Anaerobic gram-negative faecal flora in patients with Crohn's disease and healthy subjects. Antonie Van Leeuwenhoek. 49:1983;125-132
-
(1983)
Antonie Van Leeuwenhoek
, vol.49
, pp. 125-132
-
-
Ruseler-Van Embden, J.G.1
Both-Patoir, H.C.2
-
6
-
-
0018222160
-
Influence of inflammatory bowel disease on intestinal microflora
-
Keighley M.R., Arabi M.R., Dimock F., Burdon D.W., Allan R.N., Alexander-Williams J. Influence of inflammatory bowel disease on intestinal microflora. Gut. 19:1978;1099-1104
-
(1978)
Gut
, vol.19
, pp. 1099-1104
-
-
Keighley, M.R.1
Arabi, M.R.2
Dimock, F.3
Burdon, D.W.4
Allan, R.N.5
Alexander-Williams, J.6
-
7
-
-
0032902274
-
Varying cecal bacterial loads influences colitis and gastritis in HLA-B27 transgenic rats
-
Rath H.C., Ikeda J.S., Linde H.J., Scholmerich J., Wilson K.H., Sartor R.B. Varying cecal bacterial loads influences colitis and gastritis in HLA-B27 transgenic rats. Gastroenterology. 116:1999;310-319
-
(1999)
Gastroenterology
, vol.116
, pp. 310-319
-
-
Rath, H.C.1
Ikeda, J.S.2
Linde, H.J.3
Scholmerich, J.4
Wilson, K.H.5
Sartor, R.B.6
-
8
-
-
0032984363
-
Differential induction of colitis and gastritis in HLA-B27 transgenic rats selectively colonized with Bacteroides vulgatus or Escherichia coli
-
Rath H.C., Wilson K.H., Sartor R.B. Differential induction of colitis and gastritis in HLA-B27 transgenic rats selectively colonized with Bacteroides vulgatus or Escherichia coli. Infect. Immun. 67:1999;2969-2974
-
(1999)
Infect. Immun.
, vol.67
, pp. 2969-2974
-
-
Rath, H.C.1
Wilson, K.H.2
Sartor, R.B.3
-
9
-
-
0031734792
-
Culture-independant characterisation of human faecal flora using rRNA-targeted hybridisation probes
-
Doré J., Gramet G., Goderel I., Pochart P. Culture-independant characterisation of human faecal flora using rRNA-targeted hybridisation probes. Genet Sel. Ev. (Suppl. 1):1998;S287-S296
-
(1998)
Genet Sel. Ev.
, Issue.1 SUPPL.
-
-
Doré, J.1
Gramet, G.2
Goderel, I.3
Pochart, P.4
-
10
-
-
0032755259
-
Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut
-
Suau A., Bonnet R., Sutren M., Godon J.J., Gibson G.R., Collins M.D., Doré J. Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut. Appl. Environ. Microbiol. 65:1999;4799-4807
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 4799-4807
-
-
Suau, A.1
Bonnet, R.2
Sutren, M.3
Godon, J.J.4
Gibson, G.R.5
Collins, M.D.6
Doré, J.7
-
11
-
-
0037302961
-
Alteration of the dominant faecal bacterial groups in patients with Crohn 's disease of the colon
-
Seksik P., Rigottier-Gois L., Gramet G., Sutren M., Pochart P., Marteau P., Jian R., Doré J. Alteration of the dominant faecal bacterial groups in patients with Crohn 's disease of the colon. Gut. 52:2003;237-242
-
(2003)
Gut
, vol.52
, pp. 237-242
-
-
Seksik, P.1
Rigottier-Gois, L.2
Gramet, G.3
Sutren, M.4
Pochart, P.5
Marteau, P.6
Jian, R.7
Doré, J.8
-
12
-
-
0033456272
-
Bacterial diversity within the human subgingival crevice
-
Kroes I., Lepp P.W., Relman D.A. Bacterial diversity within the human subgingival crevice. Proc. Natl. Acad. Sci. USA. 96:1999;14547-14552
-
(1999)
Proc. Natl. Acad. Sci. USA.
, vol.96
, pp. 14547-14552
-
-
Kroes, I.1
Lepp, P.W.2
Relman, D.A.3
-
13
-
-
0036154330
-
Culture-independant analysis of gut bacteria: The pig gastrointestinal tract microflora revisited
-
Leser T.D., Amenuvor J.Z., Jensen T.K., Lindecrona R.H., Boye M., Moller K. Culture-independant analysis of gut bacteria: the pig gastrointestinal tract microflora revisited. Appl. Environ. Microbiol. 68:2002;673-690
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 673-690
-
-
Leser, T.D.1
Amenuvor, J.Z.2
Jensen, T.K.3
Lindecrona, R.H.4
Boye, M.5
Moller, K.6
-
14
-
-
0035989425
-
Differences in rDNA libraries of faecal bacteria derived from 10- and 25-cycle PCRs
-
Bonnet R., Suau A., Doré J., Gibson G.R., Collins M.D. Differences in rDNA libraries of faecal bacteria derived from 10- and 25-cycle PCRs. Int. J. Syst. Evol. Microbiol. 52:2002;757-763
-
(2002)
Int. J. Syst. Evol. Microbiol.
, vol.52
, pp. 757-763
-
-
Bonnet, R.1
Suau, A.2
Doré, J.3
Gibson, G.R.4
Collins, M.D.5
-
15
-
-
0036185771
-
Assessment of microbial diversity in human colonic samples by 16S rDNA sequence analysis
-
Hold G.L., Pryde S.E., Russell V.J., Furrie E., Flint H.J. Assessment of microbial diversity in human colonic samples by 16S rDNA sequence analysis. FEMS Microbiol. Ecol. 39:2002;33-39
-
(2002)
FEMS Microbiol. Ecol.
, vol.39
, pp. 33-39
-
-
Hold, G.L.1
Pryde, S.E.2
Russell, V.J.3
Furrie, E.4
Flint, H.J.5
-
16
-
-
0034111016
-
Phylogenetic relationships of butyrate-producing bacteria from the human gut
-
Barcenilla A., Pryde S.E., Martin J.C., Duncan S.H., Stewart C.S., Henderson C., Flint H.J. Phylogenetic relationships of butyrate-producing bacteria from the human gut. Appl. Environ. Microbiol. 66:2000;1654-1661
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 1654-1661
-
-
Barcenilla, A.1
Pryde, S.E.2
Martin, J.C.3
Duncan, S.H.4
Stewart, C.S.5
Henderson, C.6
Flint, H.J.7
-
18
-
-
0035175671
-
The EMBL Nucleotide Sequence Database
-
Stoesser G., Baker van den W., Broek A., Camon E., Garcia-Pastor M., Kanz C., Kulikova T., Lombard V., Lopez R., Parkinson H., Redaschi N., Sterk P., Stoehr P., Tuli M.A. The EMBL Nucleotide Sequence Database. Nucleic Acids Res. 29:2001;17-21
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 17-21
-
-
Stoesser, G.1
Baker Van Den, W.2
Broek, A.3
Camon, E.4
Garcia-Pastor, M.5
Kanz, C.6
Kulikova, T.7
Lombard, V.8
Lopez, R.9
Parkinson, H.10
Redaschi, N.11
Sterk, P.12
Stoehr, P.13
Tuli, M.A.14
-
19
-
-
0035175274
-
The RDP-II (Ribosomal Database Project)
-
Maidak B.L., Cole J.R., Lilburn T.G., Parker J.C.T., Saxman P.R., Farris R.J., Garrity G.M., Olsen G.J., Schmidt T.M., Tiedje J.M. The RDP-II (Ribosomal Database Project). Nucleic Acids Res. 29:2001;173-174
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 173-174
-
-
Maidak, B.L.1
Cole, J.R.2
Lilburn, T.G.3
Parker, J.C.T.4
Saxman, P.R.5
Farris, R.J.6
Garrity, G.M.7
Olsen, G.J.8
Schmidt, T.M.9
Tiedje, J.M.10
-
20
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:1987;406-425
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
22
-
-
0000732090
-
Evolution of protein molecules
-
H.N. Munro. New York: Academic Press
-
Jukes T.H., Cantor C.R. Evolution of protein molecules. Munro H.N. Mammalian Protein Metabolism. 1969;21-132 Academic Press, New York
-
(1969)
Mammalian Protein Metabolism
, pp. 21-132
-
-
Jukes, T.H.1
Cantor, C.R.2
-
23
-
-
0000803388
-
The population frequencies of species and the estimation of population parameters
-
Good I.J. The population frequencies of species and the estimation of population parameters. Biometrika. 40:1953;237-264
-
(1953)
Biometrika
, vol.40
, pp. 237-264
-
-
Good, I.J.1
-
24
-
-
0028126829
-
The phylogeny of the genus Clostridium: Proposal of five new genera and eleven new species combinations
-
Collins M.D., Lawson P.A., Willems A., Cordoba J.J., Fernandez-Garayzabal J., Garcia P., Cai J., Hippe H., Farrow J.A.E. The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations. Int. J. Syst. Bacteriol. 44:1994;812-826
-
(1994)
Int. J. Syst. Bacteriol.
, vol.44
, pp. 812-826
-
-
Collins, M.D.1
Lawson, P.A.2
Willems, A.3
Cordoba, J.J.4
Fernandez-Garayzabal, J.5
Garcia, P.6
Cai, J.7
Hippe, H.8
Farrow, J.A.E.9
-
25
-
-
0029900986
-
Human colonic biota studied by ribosomal DNA sequence analysis
-
Wilson K.H., Blitchington R.B. Human colonic biota studied by ribosomal DNA sequence analysis. Appl. Environ. Microbiol. 62:1996;2273-2278
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 2273-2278
-
-
Wilson, K.H.1
Blitchington, R.B.2
-
28
-
-
0024324555
-
Impaired bacterial flora in human excluded colon
-
Neut C., Colombel J.F., Guillemot F., Cortot A., Gower P., Quandalle P., Ribet M., Romond C., Paris J.C. Impaired bacterial flora in human excluded colon. Gut. 30:1989;1094-1098
-
(1989)
Gut
, vol.30
, pp. 1094-1098
-
-
Neut, C.1
Colombel, J.F.2
Guillemot, F.3
Cortot, A.4
Gower, P.5
Quandalle, P.6
Ribet, M.7
Romond, C.8
Paris, J.C.9
-
29
-
-
0031758230
-
Presence of adherent Escherichia coli strains in ileal mucosa of patients with Crohn's disease
-
Darfeuille-Michaud A., Neut C., Barnich N., Lederman E., Di Martino P., Desreumaux P., Gambiez L., Joly B., Cortot A., Colombel J.F. Presence of adherent Escherichia coli strains in ileal mucosa of patients with Crohn's disease. Gastroenterology. 115:1998;1405-1413
-
(1998)
Gastroenterology
, vol.115
, pp. 1405-1413
-
-
Darfeuille-Michaud, A.1
Neut, C.2
Barnich, N.3
Lederman, E.4
Di Martino, P.5
Desreumaux, P.6
Gambiez, L.7
Joly, B.8
Cortot, A.9
Colombel, J.F.10
-
30
-
-
0036140777
-
Mucosal flora in inflammatory bowel disease
-
Swidsinski A., Ladhoff A., Pernthaler A., Swidsinski S., Loening-Baucke V., Ortner M., Weber J., Hoffmann U., Schreiber S., Dietel M., Lochs H. Mucosal flora in inflammatory bowel disease. Gastroenterology. 122:2002;44-54
-
(2002)
Gastroenterology
, vol.122
, pp. 44-54
-
-
Swidsinski, A.1
Ladhoff, A.2
Pernthaler, A.3
Swidsinski, S.4
Loening-Baucke, V.5
Ortner, M.6
Weber, J.7
Hoffmann, U.8
Schreiber, S.9
Dietel, M.10
Lochs, H.11
-
31
-
-
0036117798
-
Changes in the bacterial flora of the neoterminal ileum after ileocolonic resection for Crohn's disease
-
Neut C., Bulois P., Desreumaux P., Membré J.M., Lederman E., Gambiez L., Cortot A., Quandalle P., Van Kruiningen H.J., Colombel J.F. Changes in the bacterial flora of the neoterminal ileum after ileocolonic resection for Crohn's disease. Am. J. Gastroenterol. 97:2002;939-946
-
(2002)
Am. J. Gastroenterol.
, vol.97
, pp. 939-946
-
-
Neut, C.1
Bulois, P.2
Desreumaux, P.3
Membré, J.M.4
Lederman, E.5
Gambiez, L.6
Cortot, A.7
Quandalle, P.8
Van Kruiningen, H.J.9
Colombel, J.F.10
-
33
-
-
0036087411
-
Enterococcus faecalis induces inflammatory bowel disease in interleukin-10 knockout mice
-
Balish E., Warner T. Enterococcus faecalis induces inflammatory bowel disease in interleukin-10 knockout mice. Am. J. Pathol. 160:2002;2253-2257
-
(2002)
Am. J. Pathol.
, vol.160
, pp. 2253-2257
-
-
Balish, E.1
Warner, T.2
-
34
-
-
0030070555
-
Sutterella wadsworthensis gen. nov., sp. nov., bile-resistant microaerophilic Campylobacter gracilis-like clinical isolates
-
Wexler H.M., Reeves D., Summanen P.H., Molitoris E., McTeague M., Duncan J., Wilson K.H., Finegold S.M. Sutterella wadsworthensis gen. nov., sp. nov., bile-resistant microaerophilic Campylobacter gracilis-like clinical isolates. Int. J. Syst. Bacteriol. 46:1996;252-258
-
(1996)
Int. J. Syst. Bacteriol.
, vol.46
, pp. 252-258
-
-
Wexler, H.M.1
Reeves, D.2
Summanen, P.H.3
Molitoris, E.4
McTeague, M.5
Duncan, J.6
Wilson, K.H.7
Finegold, S.M.8
-
35
-
-
0031662188
-
Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
-
Hugenholtz P., Goebel B.M., Pace N.R. Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J. Bacteriol. 180:1998;4765-4774
-
(1998)
J. Bacteriol.
, vol.180
, pp. 4765-4774
-
-
Hugenholtz, P.1
Goebel, B.M.2
Pace, N.R.3
-
36
-
-
0027313463
-
Pathogeny of Fusobacterium necrophorum strains from man and animals
-
Smith G.R., Thornton E.A. Pathogeny of Fusobacterium necrophorum strains from man and animals. Epidemiol. Infect. 110:1993;499-506
-
(1993)
Epidemiol. Infect.
, vol.110
, pp. 499-506
-
-
Smith, G.R.1
Thornton, E.A.2
-
37
-
-
0034056343
-
Characterization of antibody responses against rectal mucosa-associated bacterial flora in patients with ulcerative colitis
-
Matsuda H., Fujiyama Y., Andoh A., Ushijima T., Kajinami T., Bamba T. Characterization of antibody responses against rectal mucosa-associated bacterial flora in patients with ulcerative colitis. J. Gastroenterol. Hepatol. 15:2000;61-68
-
(2000)
J. Gastroenterol. Hepatol.
, vol.15
, pp. 61-68
-
-
Matsuda, H.1
Fujiyama, Y.2
Andoh, A.3
Ushijima, T.4
Kajinami, T.5
Bamba, T.6
-
38
-
-
0000191489
-
Genus Bifidobacterium
-
P.H.A. Sneath, N.S. Mair, Sharpe M.E. Baltimore, MD: Williams & Wilkins
-
Scardovi V. Genus Bifidobacterium. Sneath P.H.A., Mair N.S., Sharpe M.E. Bergey's Manual of Systematic Bacteriology. Vol. 2:1986;1418-1434 Williams & Wilkins, Baltimore, MD
-
(1986)
Bergey's Manual of Systematic Bacteriology
, vol.2
, pp. 1418-1434
-
-
Scardovi, V.1
-
39
-
-
0030906468
-
Fecal β-D-galactosidase production and Bifidobacteria are decreased in Crohn's disease
-
Favier C., Neut C., Mizon C., Cortot A., Colombel J.F., Mizon J. Fecal β-D-galactosidase production and Bifidobacteria are decreased in Crohn's disease. Dig. Dis. Sci. 42:1997;817-822
-
(1997)
Dig. Dis. Sci.
, vol.42
, pp. 817-822
-
-
Favier, C.1
Neut, C.2
Mizon, C.3
Cortot, A.4
Colombel, J.F.5
Mizon, J.6
-
40
-
-
0032962075
-
Lactobacillus species prevents colitis in interleukin 10 gene-deficient mice
-
Madsen K.L., Doyle J.S., Jewell L.D., Tavernini M.M., Fedorak R.N. Lactobacillus species prevents colitis in interleukin 10 gene-deficient mice. Gastroenterology. 116:1999;1107-1114
-
(1999)
Gastroenterology
, vol.116
, pp. 1107-1114
-
-
Madsen, K.L.1
Doyle, J.S.2
Jewell, L.D.3
Tavernini, M.M.4
Fedorak, R.N.5
-
41
-
-
0031711754
-
Bias in template-to-product ratios in multitemplate PCR
-
Polz M.F., Cavanaugh C.M. Bias in template-to-product ratios in multitemplate PCR. Appl. Environ. Microbiol. 64:1998;3724-3730
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 3724-3730
-
-
Polz, M.F.1
Cavanaugh, C.M.2
-
42
-
-
0142062399
-
Evaluation of primers and PCR conditions for the analysis of 16S rRNA genes from a natural environment
-
Hongoh Y., Yuzawa H., Ohkuma M., Kudo T. Evaluation of primers and PCR conditions for the analysis of 16S rRNA genes from a natural environment. FEMS Microbiol. Let. 221:2003;299-304
-
(2003)
FEMS Microbiol. Let.
, vol.221
, pp. 299-304
-
-
Hongoh, Y.1
Yuzawa, H.2
Ohkuma, M.3
Kudo, T.4
-
43
-
-
0032907877
-
Probiotics in inflammatory bowel disease: New insight to pathogenesis or a possible therapeutic alternative?
-
Campieri M., Gionchetti P. Probiotics in inflammatory bowel disease: new insight to pathogenesis or a possible therapeutic alternative? Gastroenterology. 116:1999;1246-1249
-
(1999)
Gastroenterology
, vol.116
, pp. 1246-1249
-
-
Campieri, M.1
Gionchetti, P.2
|