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Protein Engineering, Design and Selection

Volumn 17, Issue 5, 2004, Pages 443-453

The importance of loop length in the folding of an immunoglobulin domain

(4) Wright, Caroline F a Christodoulou, John a Dobson, Christopher M a Clarke, Jane a

a UNIVERSITY OF CAMBRIDGE (United Kingdom)

Author keywords

Immunoglobulin; Loop; Nucleation condensation; Protein folding; Titin

Indexed keywords

CONNECTIN; GLYCINE; IMMUNOGLOBULIN; MUTANT PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; BETA SHEET; HUMAN; MOLECULAR INTERACTION; NONHUMAN; POLYMERIZATION; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN ENGINEERING; PROTEIN FOLDING; STRUCTURE ANALYSIS;

AMINO ACID SEQUENCE; HUMANS; IMMUNOGLOBULINS; MOLECULAR SEQUENCE DATA; MUSCLE PROTEINS; MUTATION; PROTEIN FOLDING; PROTEIN KINASES; PROTEIN STRUCTURE, TERTIARY; STRUCTURAL HOMOLOGY, PROTEIN;

INSERTION SEQUENCES;

EID: 4644229995 PISSN: 17410126 EISSN: None Source Type: Journal
DOI: 10.1093/protein/gzh052 Document Type: Article

Times cited : (14)

References (64)

1
- 0031558798
- Al-Lazikani, B., Lesk, A.M. and Chothia, C. (1997) J. Mol. Biol., 273, 927-948.
- (1997) J. Mol. Biol. , vol.273 , pp. 927-948
- Al-Lazikani, B.¹ Lesk, A.M.² Chothia, C.³

2
- 0034604105
- Baker, D. (2000) Nature, 405, 39-42.
- (2000) Nature , vol.405 , pp. 39-42
- Baker, D.¹

3
- 0024391879
- Baldwin, R.L. (1989) TIBS, 14, 291-294.
- (1989) TIBS , vol.14 , pp. 291-294
- Baldwin, R.L.¹

4
- 0028803613
- Bateman, A. and Chothia, C. (1995) Nat. Struct. Biol., 2, 1068-1074.
- (1995) Nat. Struct. Biol. , vol.2 , pp. 1068-1074
- Bateman, A.¹ Chothia, C.²

5
- 0033976458
- Bateman, A., Birney, E., Durbin, R., Eddy, S.R., Howe, K.L. and Sonnhammer, E.L.L. (2000) Nucleic Acids Res., 28, 263-266.
- (2000) Nucleic Acids Res. , vol.28 , pp. 263-266
- Bateman, A.¹ Birney, E.² Durbin, R.³ Eddy, S.R.⁴ Howe, K.L.⁵ Sonnhammer, E.L.L.⁶

6
- 0028019827
- Bax, A. (1994) Curr. Opin. Struct. Biol., 4, 738-744.
- (1994) Curr. Opin. Struct. Biol. , vol.4 , pp. 738-744
- Bax, A.¹

7
- 0028172534
- Bork, P., Holm, L. and Sander, C. (1994) J. Mol. Biol., 242, 309-320.
- (1994) J. Mol. Biol. , vol.242 , pp. 309-320
- Bork, P.¹ Holm, L.² Sander, C.³

8
- 0033616713
- Carrion-Vasquez, M., Oberhauser, A.F., Fowler, S.B., Marszalek, P.E., Broedel, S.E., Clarke, J. and Fernandez, J.M. (1999) Proc. Natl Acad. Sci. USA, 96, 3694-3699.
- (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 3694-3699
- Carrion-Vasquez, M.¹ Oberhauser, A.F.² Fowler, S.B.³ Marszalek, P.E.⁴ Broedel, S.E.⁵ Clarke, J.⁶ Fernandez, J.M.⁷

9
- 36549094651
- Chan, H.S. and Dill, K.A. (1988) J. Chem. Phys., 90, 492-509.
- (1988) J. Chem. Phys. , vol.90 , pp. 492-509
- Chan, H.S.¹ Dill, K.A.²

10
- 0032708771
- Chiti, F., Taddei, N., White, P.M., Bucciantini, M., Magherini, F., Stefani, M. and Dobson, C.M. (1999) Nat. Struct. Biol., 11, 1005-1009.
- (1999) Nat. Struct. Biol. , vol.11 , pp. 1005-1009
- Chiti, F.¹ Taddei, N.² White, P.M.³ Bucciantini, M.⁴ Magherini, F.⁵ Stefani, M.⁶ Dobson, C.M.⁷

11
- 0030907070
- Chothia, C. and Jones, E.Y. (1997) Annu. Rev. Biochem., 66, 823-862.
- (1997) Annu. Rev. Biochem. , vol.66 , pp. 823-862
- Chothia, C.¹ Jones, E.Y.²

12
- 0023278330
- Chothia, C. and Lesk, A.M. (1987) J. Mol. Biol., 196, 901-917.
- (1987) J. Mol. Biol. , vol.196 , pp. 901-917
- Chothia, C.¹ Lesk, A.M.²

13
- 0027155577
- Clarke, J. and Fersht, A.R. (1993) Biochemistry, 32, 4322-4329.
- (1993) Biochemistry , vol.32 , pp. 4322-4329
- Clarke, J.¹ Fersht, A.R.²

14
- 0031214818
- Clarke, J., Hamill, S.J. and Johnson, C.M. (1997) J. Mol. Biol., 270, 771-778.
- (1997) J. Mol. Biol. , vol.270 , pp. 771-778
- Clarke, J.¹ Hamill, S.J.² Johnson, C.M.³

15
- 0033200251
- Clarke, J., Cota, E., Fowler, S.B, and Hamill, S.J. (1999) Structure, 7, 1145-1153.
- (1999) Structure , vol.7 , pp. 1145-1153
- Clarke, J.¹ Cota, E.² Fowler, S.B.³ Hamill, S.J.⁴

16
- 0035793212
- Cota, E., Steward, A., Fowler, S.B. and Clarke, J. (2001) J. Mol. Biol., 305, 1185-1194.
- (2001) J. Mol. Biol. , vol.305 , pp. 1185-1194
- Cota, E.¹ Steward, A.² Fowler, S.B.³ Clarke, J.⁴

17
- 0032980496
- Debe, D.A., Carlson, M.J. and Goddard III, W.A. (1999) Proc. Natl Acad. Sci. USA, 96, 2596-2601.
- (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 2596-2601
- Debe, D.A.¹ Carlson, M.J.² Goddard III, W.A.³

18
- 0347357617
- Dobson, C.M. (2003) Nature, 426, 884-890.
- (2003) Nature , vol.426 , pp. 884-890
- Dobson, C.M.¹

19
- 0028856785
- Fersht, A.R. (1995) Biochemistry, 92, 10869-10873.
- (1995) Biochemistry , vol.92 , pp. 10869-10873
- Fersht, A.R.¹

20
- 0003818541
- W.H. Freeman and Company, New York
- Fersht, A.R. (1998) Structure and Mechanism in Protein Science. W.H. Freeman and Company, New York.
- (1998) Structure and Mechanism in Protein Science
- Fersht, A.R.¹

21
- 0034652206
- Fersht, A.R. (2000) Proc. Natl Acad. Sci. USA, 97, 1525-1529.
- (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 1525-1529
- Fersht, A.R.¹

22
- 0037154980
- Fersht, A.R. and Daggett, V. (2002) Cell, 108, 573-582.
- (2002) Cell , vol.108 , pp. 573-582
- Fersht, A.R.¹ Daggett, V.²

23
- 0026511656
- Fersht, A.R., Matouschek, A. and Serrano, L. (1992) J. Mol. Biol., 224, 771-782.
- (1992) J. Mol. Biol. , vol.224 , pp. 771-782
- Fersht, A.R.¹ Matouschek, A.² Serrano, L.³

24
- 0030573054
- Fong, S., Hamill, S.J., Proctor, M., Freund, S.M.V., Benian, G.M., Chothia, C., Bycroft, M. and Clarke, J. (1996) J. Mol. Biol., 264, 624-639.
- (1996) J. Mol. Biol. , vol.264 , pp. 624-639
- Fong, S.¹ Hamill, S.J.² Proctor, M.³ Freund, S.M.V.⁴ Benian, G.M.⁵ Chothia, C.⁶ Bycroft, M.⁷ Clarke, J.⁸

25
- 0034984382
- Fowler, S.B. and Clarke, J. (2001) Structure, 9, 355-366.
- (2001) Structure , vol.9 , pp. 355-366
- Fowler, S.B.¹ Clarke, J.²

26
- 0036389817
- Fowler, S.B., Best, R.B., Toca-Herrera, J.L., Rutherford, T.J., Steward, A., Paci, E., Karplus, M. and Clarke, J. (2002) J. Mol. Biol., 322, 841-849.
- (2002) J. Mol. Biol. , vol.322 , pp. 841-849
- Fowler, S.B.¹ Best, R.B.² Toca-Herrera, J.L.³ Rutherford, T.J.⁴ Steward, A.⁵ Paci, E.⁶ Karplus, M.⁷ Clarke, J.⁸

27
- 0033538417
- Fraternali, F. and Pastore, A. (1999) J. Mol. Biol., 290, 581-593.
- (1999) J. Mol. Biol. , vol.290 , pp. 581-593
- Fraternali, F.¹ Pastore, A.²

28
- 0035936689
- Grantcharova, V.P. and Baker, D. (2001) J. Mol. Biol., 306, 555-563.
- (2001) J. Mol. Biol. , vol.306 , pp. 555-563
- Grantcharova, V.P.¹ Baker, D.²

29
- 0034691039
- Grantcharova, V.P., Riddle, D.S. and Baker, D. (2000) Proc. Natl Acad. Sci. USA, 97, 7084-7089.
- (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 7084-7089
- Grantcharova, V.P.¹ Riddle, D.S.² Baker, D.³

30
- 0035253197
- Gunasekaran, K., Eyles, S.J., Hagler, A.T. and Gierasch, L.M. (2001) Curr. Opin. Struct. Biol., 11, 83-93.
- (2001) Curr. Opin. Struct. Biol. , vol.11 , pp. 83-93
- Gunasekaran, K.¹ Eyles, S.J.² Hagler, A.T.³ Gierasch, L.M.⁴

31
- 0032773506
- Halaby, D.M., Poupon, A. and Mornon, J.-P. (1999) Protein Eng., 12, 563-571.
- (1999) Protein Eng. , vol.12 , pp. 563-571
- Halaby, D.M.¹ Poupon, A.² Mornon, J.-P.³

32
- 0034695407
- Hamill, S.J., Cota, E., Chothia, C. and Clarke, J. (2000a) J. Mol. Biol., 295, 641-649.
- (2000) J. Mol. Biol. , vol.295 , pp. 641-649
- Hamill, S.J.¹ Cota, E.² Chothia, C.³ Clarke, J.⁴

33
- 0034677663
- Hamill, S.J., Steward, A. and Clarke, J. (2000b) J. Mol. Biol., 297, 165-178.
- (2000) J. Mol. Biol. , vol.297 , pp. 165-178
- Hamill, S.J.¹ Steward, A.² Clarke, J.³

34
- 5244245983
- Hammond, G.S. (1955) J. Am. Chem. Soc., 77, 334-338.
- (1955) J. Am. Chem. Soc. , vol.77 , pp. 334-338
- Hammond, G.S.¹

35
- 0028361540
- Harpaz, Y. and Chothia, C. (1994) J. Mol. Biol., 238, 528.
- (1994) J. Mol. Biol. , vol.238 , pp. 528
- Harpaz, Y.¹ Chothia, C.²

36
- 0030584660
- Improta, S., Politou, A.S. and Pastore, A. (1996) Structure, 4, 323-337.
- (1996) Structure , vol.4 , pp. 323-337
- Improta, S.¹ Politou, A.S.² Pastore, A.³

37
- 0026345750
- Jackson, S.E. and Fersht, A.R. (1991) Biochemistry, 30, 10428-10435.
- (1991) Biochemistry , vol.30 , pp. 10428-10435
- Jackson, S.E.¹ Fersht, A.R.²

38
- 0027145011
- Jones, E.Y. (1993) Curr. Opin. Struct. Biol., 3, 846-852.
- (1993) Curr. Opin. Struct. Biol. , vol.3 , pp. 846-852
- Jones, E.Y.¹

39
- 0001339532
- Kraulis, P.J. (1991) J. Appl. Crystallogr., 24, 946-950.
- (1991) J. Appl. Crystallogr. , vol.24 , pp. 946-950
- Kraulis, P.J.¹

40
- 0031576337
- Ladurner, A.G. and Fersht, A.R. (1997) J. Mol. Biol., 273, 330-337.
- (1997) J. Mol. Biol. , vol.273 , pp. 330-337
- Ladurner, A.G.¹ Fersht, A.R.²

41
- 0037160031
- Lantto, J. and Ohlin, M. (2002) J. Biol. Chem., 277, 45108-45114.
- (2002) J. Biol. Chem. , vol.277 , pp. 45108-45114
- Lantto, J.¹ Ohlin, M.²

42
- 0036829967
- Lindberg, M., Tangrot, J. and Oliveberg, M. (2002) Nat. Struct. Biol., 9, 818-822.
- (2002) Nat. Struct. Biol. , vol.9 , pp. 818-822
- Lindberg, M.¹ Tangrot, J.² Oliveberg, M.³

43
- 0031809493
- Linke, W.A., Stockmeier, M.R., Ivemeyer, M., Hosser, H. and Mundel, P. (1998) J. Cell Sci., 111, 1567-1574.
- (1998) J. Cell Sci. , vol.111 , pp. 1567-1574
- Linke, W.A.¹ Stockmeier, M.R.² Ivemeyer, M.³ Hosser, H.⁴ Mundel, P.⁵

44
- 0033977962
- Lo Conte, L., Ailey, B., Hubbard, T.J.P., Brenner, S.E., Murzin, A.G. and Chothia, C. (2000) Nucleic Acids Res., 28, 257-259.
- (2000) Nucleic Acids Res. , vol.28 , pp. 257-259
- Lo Conte, L.¹ Ailey, B.² Hubbard, T.J.P.³ Brenner, S.E.⁴ Murzin, A.G.⁵ Chothia, C.⁶

45
- 0033604845
- Lorch, M., Mason, J.M., Clarke, A.R. and Parker, M.J. (1999) Biochemistry, 38, 1377-1385.
- (1999) Biochemistry , vol.38 , pp. 1377-1385
- Lorch, M.¹ Mason, J.M.² Clarke, A.R.³ Parker, M.J.⁴

46
- 0037215268
- Makarov, D.E. and Plaxco, K.W. (2003) Protein Sci., 12, 17-26.
- (2003) Protein Sci. , vol.12 , pp. 17-26
- Makarov, D.E.¹ Plaxco, K.W.²

47
- 0039726624
- Martinez, J.C., Viguera, A.R., Berisio, R., Wilmanns, M., Mateo, P.L., Filimonov, V.V. and Serrano, L. (1999) Biochemistry, 38, 549-559.
- (1999) Biochemistry , vol.38 , pp. 549-559
- Martinez, J.C.¹ Viguera, A.R.² Berisio, R.³ Wilmanns, M.⁴ Mateo, P.L.⁵ Filimonov, V.V.⁶ Serrano, L.⁷

48
- 0027171034
- Matouschek, A. and Fersht, A.R. (1993) Proc. Natl Acad. Sci. USA, 90, 7814-7818.
- (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 7814-7818
- Matouschek, A.¹ Fersht, A.R.²

49
- 0036678120
- Miller, E.J., Fischer, K.F. and Marqusee, S. (2002) Proc. Natl Acad. Sci. USA, 99, 10359-10363.
- (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 10359-10363
- Miller, E.J.¹ Fischer, K.F.² Marqusee, S.³

50
- 0032574769
- Mirny, L.A., Abkevich, V.I. and Shakhnovich, E. (1998) Proc. Natl Acad. Sci. USA, 95, 4976-4981.
- (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 4976-4981
- Mirny, L.A.¹ Abkevich, V.I.² Shakhnovich, E.³

51
- 0030593468
- Miroux, B. and Walker, J.E. (1996) J. Mol. Biol., 260, 289-298.
- (1996) J. Mol. Biol. , vol.260 , pp. 289-298
- Miroux, B.¹ Walker, J.E.²

52
- 0030623398
- Nagi, A.D. and Regan, L. (1997) Fold. Design, 2, 67-75.
- (1997) Fold. Design , vol.2 , pp. 67-75
- Nagi, A.D.¹ Regan, L.²

53
- 0033548061
- Nagi, A.D., Anderson, K.S. and Regan, L. (1999) J. Mol. Biol., 286, 257-265.
- (1999) J. Mol. Biol. , vol.286 , pp. 257-265
- Nagi, A.D.¹ Anderson, K.S.² Regan, L.³

54
- 0032503027
- Oliveberg, M., Tan, Y.-J., Silow, M. and Fersht, A.R. (1998) J. Mol. Biol., 277, 933-943.
- (1998) J. Mol. Biol. , vol.277 , pp. 933-943
- Oliveberg, M.¹ Tan, Y.-J.² Silow, M.³ Fersht, A.R.⁴

55
- 0034612284
- Paci, E. and Karplus, M. (2000) Proc. Natl Acad. Sci. USA, 97, 6521-6526.
- (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 6521-6526
- Paci, E.¹ Karplus, M.²

56
- 0029644479
- Pfuhl, M. and Pastore, A. (1995) Structure, 3, 391-401.
- (1995) Structure , vol.3 , pp. 391-401
- Pfuhl, M.¹ Pastore, A.²

57
- 0032502839
- Plaxco, K.W., Simons, K.T. and Baker, D. (1998) J. Mol. Biol., 277, 985-994.
- (1998) J. Mol. Biol. , vol.277 , pp. 985-994
- Plaxco, K.W.¹ Simons, K.T.² Baker, D.³

58
- 0028834886
- Politou, A.S., Thomas, D.J. and Pastore, A. (1995) Biophys. J., 69, 2601-2610.
- (1995) Biophys. J. , vol.69 , pp. 2601-2610
- Politou, A.S.¹ Thomas, D.J.² Pastore, A.³

59
- 0037225280
- Sanchez, I.E. and Kiefhaber, T. (2002) J. Mol. Biol., 325, 367-376.
- (2002) J. Mol. Biol. , vol.325 , pp. 367-376
- Sanchez, I.E.¹ Kiefhaber, T.²

60
- 0037305938
- Scalley-Kim, M., Minard, P. and Baker, D. (2003) Protein Sci., 12, 197-206.
- (2003) Protein Sci. , vol.12 , pp. 197-206
- Scalley-Kim, M.¹ Minard, P.² Baker, D.³

61
- 0030967587
- Squire, J.M. (1997) Curr. Opin. Struct. Biol., 7, 247-257.
- (1997) Curr. Opin. Struct. Biol. , vol.7 , pp. 247-257
- Squire, J.M.¹

62
- 0035252350
- Vendruscolo, M., Paci, E., Dobson, C.M. and Karplus, M. (2001) Nature, 409, 641-645.
- (2001) Nature , vol.409 , pp. 641-645
- Vendruscolo, M.¹ Paci, E.² Dobson, C.M.³ Karplus, M.⁴

63
- 0030663205
- Viguera, A.R. and Serrano, L. (1997) Nat. Struct. Biol., 4, 939-946.
- (1997) Nat. Struct. Biol. , vol.4 , pp. 939-946
- Viguera, A.R.¹ Serrano, L.²

64
- 0043125488
- Wright, C.F., Lindorff-Larsen, K., Randles, L.G. and Clarke, J. (2003) Nat. Struct. Biol., 10, 658-662.
- (2003) Nat. Struct. Biol. , vol.10 , pp. 658-662
- Wright, C.F.¹ Lindorff-Larsen, K.² Randles, L.G.³ Clarke, J.⁴

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