The topomer-sampling model of protein folding

Proceedings of the National Academy of Sciences of the United States of America

Volumn 96, Issue 6, 1999, Pages 2596-2601

  Debe, Derek A ^a   Carlson, Matt J ^a   Goddard III, William A ^a  

^a CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CONFERENCE PAPER; CONFORMATIONAL TRANSITION; MOLECULAR DYNAMICS; PRIORITY JOURNAL; PROTEIN FOLDING; SYSTEM ANALYSIS;

EID: 0032980496     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.96.6.2596     Document Type: Article

References (48)

1. Šali, A., Shakhnovich, E. & Karplus, M. (1994) Nature (London) 369, 248-251.
2. Levinthal, C. (1969) in Mossbauer Spectroscopy in Biological Systems, eds. Debrunner, P., Tsibris, J. C. M. & Münck, E. (Univ. Illinois Press, Urbana, IL), pp. 21-24.
3. Zwanzig, R., Szabo, A. & Bagchi, B. (1992) Proc. Natl. Acad. Sci. USA 89, 20-22.
4. Levinthal, C. (1968) J. Chim. Phys. 65, 44-45.
5. Wolynes, P. G., Onuchic, J. N. & Thirmulai, D. (1995) Science 267, 1619-1620.
6. Dill, K. A. & Chan, H. S. (1997) Nat. Struct. Biol. 4, 10-19.
7. Baldwin, R. L. (1994) Nature (London) 369, 183-184.
8. Karplus, M. (1997) Fold. Des. 2, S69-S75.
9. Jackson, S. E. & Fersht A. R. (1991) Biochemistry 30, 10436-10443.
10. Creighton, T. E. (1993) in Proteins (Freeman, New York), pp. 290-291.
11. Maiorov, V. N. & Crippen, G. M. (1994) J. Mol. Biol. 235, 625-634.
12. Orengo, C. A., Michie, A. D., Jones, S., Jones, D. T., Swindells, M. B. & Thornton, J. M. (1997) Structure (London) 5, 1093-1108.
13. Sadanobu, J. & Goddard, W. A., III (1997) J. Chem. Phys. 106, 6722-6729.
14. Rooman, M. J., Kocher, J. P. & Wodak, S. J. (1992) J. Mol. Biol. 221, 961-979.
15. Mayo, S. L., Olafson, B. D. & Goddard, W. A., III (1990) J. Phys. Chem. 94, 8897-8909.
16. Maiorov, V. N. & Crippen, G. M. (1995) Proteins Struct. Func. Genet. 22, 273-283.
17. Kabsch, W. & Sander, C. (1978) Acta Crystallogr. A 34, 827-828.
18. Hagen, S. J., Hofrichter, J., Szabo, A. & Eaton, W. A. (1996) Proc. Natl. Acad. Sci. USA 93, 11615-11617.
19. Jackson, S. E. (1998) Fold. Des. 3, R81-R91.
20. Plaxco, K. W., Spitzfaden, C. Campbell, I. D. & Dobson, C. M. (1997) J. Mol. Biol. 270, 763-770.
21. Plaxco, K. W., Simons, K. T. & Baker, D. (1998) J. Mol. Biol. 277, 985-994.
22. Guijarro, J. I., Morton, C. J., Plaxco, K. W., Campbell, I. D. & Dobson, C. M. (1998) J. Mol. Biol. 276, 657-667.
23. Dill, K. A. (1985) Biochemistry 24, 1501-1509.
24. Fersht, A. R. (1997) Curr. Opin. Struct. Biol. 7, 3-9.
25. Karplus, M. & Weaver, D. L. (1976) Nature (London) 260, 404-406.
26. Wetlaufer, D. B. (1973) Proc. Natl. Acad. Sci. USA 70, 697-701.
27. Bayer, P., Kraft, M., Ejchart, A., Westendorp, M., Frank, R. & Rösch, P. (1995) J. Mol. Biol. 247, 529-535.
28. Baldwin, R. L. (1993) Curr. Opin. Struct. Biol. 3, 84-91.
29. Brown, J. E. & Klee, W. A. (1971) Biochemistry 10, 470-476.
30. Bierzynski, A. P., Kim, S. & Baldwin, R. L. (1982) Proc. Natl. Acad. Sci. USA 79, 2470-2474.
31. Bryngelson, J. D. & Wolynes, P. G. (1989) J. Phys. Chem. 93, 6902-6915.
32. Parker, M. J., Lorch, M., Sessions, R. B. & Clarke, A. R. (1998) Biochemistry 37, 2538-2545.
33. Ptitsyn, O. B., Pain, R. H., Semisotnov, G. V., Zerovnik, E. & Razgulyaev, O. I. (1990) FEBS Lett. 262, 20-24.
34. Eisenberg, D. & McLachlan, A. D. (1986) Nature (London) 319, 199-203.
35. Chen, B. L., Baase, W. A., Nicholson, H. & Schellman, J. A. (1992) Biochemistry 31, 1464-1476.
36. Mines, G. A., Pascher, T., Lee, S. C., Winkler, J. R. & Gray, H. B. (1996) Chem. Biol. 3, 491-497.
37. Plaxco, K. W., Guijarro, J. I., Morton, C. J., Pitkeathly, M., Campbell, I. D. & Dobson, C. M. (1998) Biochemistry 37, 2529-2537.
38. Wilson, G., Hecht, L. & Barron, L. D. (1996) Biochemistry 35, 12518-12525.
39. Barron, L. D., Hecht, L. & Wilson, G. (1997) Biochemistry 36, 13143-13147.
40. Plaxco, K. W. & Baker, D. (1998) Proc. Natl. Acad. Sci. USA 95, 13591-13596.
41. Jacob, M. Schindler, T. Balbach, J. & Schmid, F. X., (1997) Proc. Natl. Acad. Sci. USA 94, 5622-5627.
42. Creighton, T. E. (1997) Curr. Opin. Struct. Biol. 7, R380-R383.
43. Prusiner, S. B. (1997) Science 278, 245-251.
44. Barsukov, I. L., Nolde, D. E., Lomize, A. L. & Arseniev, A. S. (1992) Eur. J. Biochem. 206, 665-672.
45. Williamson, M. P. & Madison, V. S. (1990) Biochemistry 29, 2895-2905.
46. Kragelun, B. B., Anderson, K. V., Madsen, J. C., Knudsen, J. & Poulsen, F. M. (1993) J. Mol. Biol. 230, 1260-1277.
47. Wilbanks, S. M. & McKay, D. B. (1995) J. Biol. Chem. 270, 2251-2257.
48. Vuister, G. W., Kim, S. J., Orosz, A., Marquardt, J. & Bax, A. (1994) Nat. Struct. Biol. 1, 605-614.