Relationship between metabolic and genomic diversity in sesame (Sesamum indicum L.)

BMC Genomics

Volumn 9, Issue , 2008, Pages

  Laurentin, Hernán ^a   Ratzinger, Astrid ^b   Karlovsky, Petr ^b  

^a UNIVERSIDAD CENTROCCIDENTAL LISANDRO ALVARADO   (Venezuela)

^b UNIVERSITY OF GÖTTINGEN   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ALCOHOL; PLANT DNA; PRIMER DNA;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARTICLE; ASIA; CONTROLLED STUDY; CORRELATION ANALYSIS; DOMESTICATED PLANT; ELECTROSPRAY MASS SPECTROMETRY; GENETIC CONSERVATION; GENETIC MARKER; GENETIC VARIABILITY; GENOTYPE; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; INDIA; METABOLOMICS; MOLECULAR EVOLUTION; MULTIVARIATE ANALYSIS; NONHUMAN; PHENOTYPE; PLANT BREEDING; PLANT GENETICS; PLANT METABOLISM; SESAME; SOLVENT EXTRACTION; SPECIES DIVERSITY; SUDAN; VENEZUELA; CLASSIFICATION; GENETICS; GENOME; ISOLATION AND PURIFICATION; METABOLISM;

SESAMUM INDICUM;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM ANALYSIS; DNA PRIMERS; DNA, PLANT; GENOME, PLANT; SESAMUM; VARIATION (GENETICS);

EID: 46149084000     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-9-250     Document Type: Article

References (49)

1. Ovesná J Poláková K Leisová L DNA analyses and their applications in plant breeding Czech J Genet Plant Breed 2002, 38:29-40.
2. Voss P Hogers R Bleeter M Reijans M Lee van de T Hornes M Frijters A Pot J Peleman J Kuiper M Zabeau M AFLP: a new technique for DNA fingerprinting Nucleic Acids Res 1995, 23:4407-4414. 307397 7501463 10.1093/nar/23.21.4407
3. Li YC Korol AB Fahima T Beiles A Nevo E Microsatellites: Genomic distribution, putative functions and mutational mechanisms Molecular Ecology 2002, 11:2453-65. 10.1046/j.1365-294X.2002.01643.x 12453231
4. Dunn W Ellis D Metabolomics: Current analytical platforms and methodologies Trends in Analytical Chemistry 2005, 24:285-294. 10.1016/ j.trac.2004.11.021
5. Hall RD Plant metabolomics: From holistic hope, to hype, to hot topic New Phytologist 2006, 169:453-468. 10.1111/j.1469-8137.2005.01632.x 16411949
6. Fiehn O Metabolomics - the link between genotypes and phenotypes Plant Molecular Biology 2002, 48:155-171. 10.1023/A:1013713905833 11860207
7. Fiehn O Weckwerth W Deciphering metabolic networks Eur J Biochem 2003, 270:579-588. 10.1046/j.1432-1033.2003.03427.x 12581198
8. Bedigian D Harlan J Evidence for cultivation on sesame in the ancient world Economic Botany 1986, 40:137-154.
9. Bedigian D Evolution of sesame revisited: domestication, diversity and prospects Genet Res Crop Evol 2003, 50:779-787. 10.1023/A:1025029903549
10. Yoshida H Takagi S Effects of seed roasting temperature and time on the quality characteristics of sesame (Sesamum indicum) oil J Sci Food Agric 1997, 75:19-26. 10.1002/(SICI)1097-0010(199709)75:1<19: :AID-JSFA830>3.0.CO;2-C
11. Shyu Y Hwang L Antioxidative activity of the crude extract of lignan glycosides from unroasted Burma black sesame meal Food Research International 2002, 35:357-365. 10.1016/S0963-9969(01)00130-2
12. Dachtler M Put van de F Stijn F Beindorff C Fritsche J On-line LC-NMR-MS characterization of sesame oil extracts and assessment of their antioxidant activity Eur J Lipid Sci Technol 2003, 105:488-496. 10.1002/ ejlt.200300835
13. Shirato-Yasumoto S Komeichi M Okuyama Y Horigane A A simplified HPLC quantification of sesamin and sesamolin in sesame seed SABRAO Journal of Breeding and Genetics 2003, 35:27-34.
14. Kang MH Naito M Tsujihara N Osawa T Sesamolin inhibits lipid peroxidation in rat liver and kidney J Nutr 1998, 128:1018-1022. 9614163
15. Kang MH Kawai Y Naito M Osawa T Dietary defatted sesame flour decreases susceptibility to oxidative stress in hypercholesterolemic rabbits J Nutr 1999, 129:1885-1890. 10498763
16. Kang MH Naito M Sakai K Uchida K Osawa T Mode of action of sesame lignans in protecting low-density lipoprotein against oxidative damage in vitro Life Sci 2000, 66:161-171. 10.1016/S0024-3205(99)00574-3 10666012
17. Miyake Y Fukumoto S Okada M Sakaida K Nakamura Y Osawa T Antioxidative catechol lignans converted from sesamin and sesaminol triglucoside by culturing with Aspergillus J Agric Food Chem 2005, 53:22-27. 10.1021/ jf048743h 15631503
18. Devine G Denholm I An unconventional use of piperonyl butoxide for managing the cotton whitefly, Bemisia tabaci (Hemiptera: Aleyrodidae) Bulletin of Entomological Research 1988, 88:601-610.
19. Devine G Ishaaya I Horowitz A Denholm I The response of pyriproxyfen-resistant and susceptible Bemisia tabaci Genn. (Homoptera: Aleyrodidae) to pyriproxyfen and fenoxycarb alone and in combination with piperonyl butoxide Pestic Sci 1999, 55:405-411.
20. Brooker N Long J Stephan S Field assessment of plant derivative compound for managing fungal soybean diseases Biochemical Society Transactions 2000, 28:917-920. 10.1042/BST0280917 11171257
21. Victor S Crisóstomo F Bueno F Pagnocca F Fernandes J Correa A Bueno O Hebling J Bacci M Jr Vieira P daSilva F Toxicity of synthetic piperonyl compounds to leaf-cutting ants and their symbiotic fungus Pest Manag Sci 2001, 57:603-608. 10.1002/ps.333 11464791
22. Harmatha J Nawrot J Insect feeding deterrent activity of lignans and related phenylpropanoids with a methylenedioxyphenyl (pyperonyl) structure moiety Entomologia Experimentalis et Applicata 2002, 104:51-60. 10.1023/A:1021286002077
23. Nascimento I Murata A Bortoli S Lopes L Insecticidad activity of chemical constituents from Aristolochia pubescens against Anticarsia gemmatalis larvae Pest Manag Sci 2004, 60:413-416. 10.1002/ps.805 15119605
24. Peñalvo J Heinonen S Aura A Adlerreutz H Dietary sesamin in converted to enterolactone in humans J Nutr 2005, 135:1056-1062. 15867281
25. Laurentin H Karlovsky P Genetic relationship and diversity in a sesame (Sesamum indicum L.) germplasm collection using amplified fragment length polymorphism (AFLP) BMC Genetics 2006, 7:10. 1434769 16483380 10.1186/1471-2156-7-10
26. Laurentin H Karlovsky P AFLP fingerprinting of sesame (Sesamum indicum L.) cultivars: identification, genetic relationship and comparison of AFLP informativeness parameters Genetic Resources and Crop Evolution 2007, 54:1437-1446. 10.1007/s10722-006-9128-y
27. Wolde-meskel E Terefework Z Lindstrom K Frostegard A Metabolic and genomic diversity of rhizobia isolated from field standing native and exotic woody legumes in southern Ethiopia Syst Appl Microbiol 2004, 27:603-611. 10.1078/0723202041748145 15490562
28. Seymour F Cresswell J Jack P Lappin-Scott H Haag H Talbot N The influence of genotypic variation on metabolite diversity in populations of two endophytic fungal species Fungal Genetics and Biology 2004, 41:721-734. 10.1016/j.fgb.2004.02.007
29. Keurentjes JJ Fu J de Vos CH Lommen A Hall RD Bino RJ Plas van der LH Jansen RC Vreugdenhil D Koornneef M The genetics of plant metabolism Natural Genetics 2006, 38:842-849. 10.1038/ng1815
30. De Vos RC Moco S Lommen A Keurentjes JJ Bino RJ Hall RD Untargeted large-scale plant metabolomics using liquid chromatography coupled to mass spectrometry Nature Protocols 2007, 2:778-791. 10.1038/ nprot.2007.95 17446877
31. Dixon RA Gang DR Charlton AJ Fiehn O Kuiper HA Reynolds TL Tjeerdema RS Jeffery EH German JB Ridley WP Seiber JN Applications of metabolomics in agriculture J Agric Food Chem 2006, 54:8984-8994. 10.1021/jf061218t 17117782
32. Rao N Plant genetic resources: advancing conservation and use through biotechnology African Journal of Biotechnology 2004, 3:136-145.
33. Windig W Phalp JM Payne AW Noise and Background Reduction Method for Component Detection in Liquid Chromatography/Mass Spectrometry Anal Chem 1996, 68:3602-3606. 10.1021/ac960435y
34. Berg RA Hoefsloot van den HCJ Westerhuis JA Smilde AK Werf MJ van der Centering, scaling, and transformations: improving the biological information content of metabolomics data BMC Genomics 2006, 7:142. 1534033 16762068 10.1186/1471-2164-7-142
35. Joy N Abraham Z Soniya EV A preliminary assessment of genetic relationships among agronomically important cultivars of black pepper BMC Genetics 2007, 8:42. 1948014 17603884 10.1186/1471-2156-8-42
36. Bhattacharya E Ranade SA Molecular distinction amongst varieties of mulberry using RAPD and DAMD profiles BMC Plant Biology 2001, 1:3. 64612 11801190 10.1186/1471-2229-1-3
37. Awasthi AK Nagaraja GM Naik GV Kanginakudru S Thangavelu K Nagaraju J Genetic diversity and relationships in mulberry (genus Morus) as revealed by RAPD and ISSR marker assays BMC Genetics 2004, 5:1. 343270 14715088 10.1186/1471-2156-5-1
38. Dangi RS Lagu MD Choudhary LB Ranjekar PK Gupta VS Assessment of genetic diversity in Trigonella foenum-graecum and Trigonella caerulea using ISSR and RAPD markers BMC Plant Biol 2004, 4:13. 514543 15285785 10.1186/ 1471-2229-4-13
39. Bhattacharya E Dandin SB Ranade SA Single primer amplification reaction methods reveal exotic and indigenous mulberry varieties are similarly diverse J Biosci 2005, 30:669-77.10.1007/BF02703567 16388141
40. Tam SM Mhiri C Vogelaar A Kerkveld M Pearce SR Grandbastien MA Comparative analyses of genetic diversities within tomato and pepper collections detected by retrotransposon-based SSAP, AFLP and SSR Theor Appl Genet 2005, 110:819-31. 10.1007/s00122-004-1837-z 15700147
41. Secondary Metabolites in Soil Ecology Soil Biology New York: Springer Karlovsky P, Varma A 2007, 2:1-19.
42. Willför SM Smeds AI Holmbom BR Chromatographic analysis of lignans J Chromatography 2006, 1112:64-77. 10.1016/j.chroma.2005.11.054
43. Dachtler M Put van de FHM Stijn Fv Beindorff CM Fritsche J On-line LC-NMR-MS characterization of sesame oil extracts and assessment of their antioxidant activity Eur J Lipid Sci Technol 2003, 105:488-96. 10.1002/ejlt.200300835
44. Lim JS Adachi Y Takahashi Y Ide T Comparative analysis of sesame lignans (sesamin and sesamolin) in affecting hepatic fatty acid metabolism in rats Br J Nutr 2007, 97:85-95. 10.1017/S0007114507252699 17217563
45. Yasumoto SS Komeichi M Okuyama Y Horigane A A simplified HPLC quantification of sesamin and sesamolin in sesame seed SABRAO J Breed Gen 2003, 35:27-34.
46. Williamson KS Morris JB Pye QN Kamat CD Hensley K A survey of sesamin and composition of tocopherol variability from seeds of eleven diverse sesame (Sesamum indicum L.) genotypes using HPLC-PAD-ECD Phytochem Anal 2007. DOI: 10.1002/pca.1050 18058795
47. Hettwer U Laurentin H Karlovsky P Determination of antioxidative furofuran lignans in sesame seeds by HPLC-MS Proceedings of the Second International Symposium on Recent Advances in Food Analysis, Last Minute Posters: Prague Abingdon: Taylor and Francis Hajslova J, Nielen MWF 2006:15. 2-4 November 2005
48. Laurentin H Layrisse A Quijada P Evaluación de dos ciclos de selección recurrente para altos rendimientos de semilla en una población de ajonjolí Agronomía Tropical (Maracay) 2000, 50:521-535.
49. Mazzani B Inamar: nueva variedad de ajonjolí producida en el Instituto Nacional de Agricultura Agronomía Tropical (Maracay) 1953, 3:211-213.