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Volumn 90, Issue 7, 2008, Pages 1064-1073

A guanine-linked end-effect is a sensitive reporter of charge flow through DNA and RNA double helices

Author keywords

Aniline; Anthraquinone; Charge transfer; Double strand DNA and RNA cleavage; Electron hole

Indexed keywords

DOUBLE STRANDED DNA; DOUBLE STRANDED RNA; GUANINE; NUCLEIC ACID;

EID: 45849101279     PISSN: 03009084     EISSN: 61831638     Source Type: Journal    
DOI: 10.1016/j.biochi.2008.01.003     Document Type: Article
Times cited : (6)

References (33)
  • 1
    • 0033079847 scopus 로고    scopus 로고
    • Long-range oxidative damage to DNA: effects of distance and sequence
    • Núñez M.E., Hall D.B., and Barton J.K. Long-range oxidative damage to DNA: effects of distance and sequence. Chem. Biol. 6 (1999) 85-97
    • (1999) Chem. Biol. , vol.6 , pp. 85-97
    • Núñez, M.E.1    Hall, D.B.2    Barton, J.K.3
  • 2
    • 0035997345 scopus 로고    scopus 로고
    • Long-distance electron transfer through DNA
    • Giese B. Long-distance electron transfer through DNA. Annu. Rev. Biochem. 71 (2002) 51-70
    • (2002) Annu. Rev. Biochem. , vol.71 , pp. 51-70
    • Giese, B.1
  • 3
    • 0034058321 scopus 로고    scopus 로고
    • Long range charge flow in DNA: transient structural distortions control the distance dependence
    • Schuster G.B. Long range charge flow in DNA: transient structural distortions control the distance dependence. Acc. Chem. Res. 33 (2000) 253-260
    • (2000) Acc. Chem. Res. , vol.33 , pp. 253-260
    • Schuster, G.B.1
  • 4
    • 0033587765 scopus 로고    scopus 로고
    • Long-distance charge transport in duplex DNA: the phonon-assisted polaron-like hopping mechanism
    • Henderson P.T., Jones D., Hampikian G., Kan Y., and Schuster G.B. Long-distance charge transport in duplex DNA: the phonon-assisted polaron-like hopping mechanism. Proc. Natl. Acad. Sci. U.S.A. 96 (1999) 8353-8358
    • (1999) Proc. Natl. Acad. Sci. U.S.A. , vol.96 , pp. 8353-8358
    • Henderson, P.T.1    Jones, D.2    Hampikian, G.3    Kan, Y.4    Schuster, G.B.5
  • 5
    • 21344445906 scopus 로고    scopus 로고
    • Long-range radical cation migration in DNA: investigation of the mechanism
    • Joy A., and Schuster G.B. Long-range radical cation migration in DNA: investigation of the mechanism. Chem. Commun. 22 (2005) 2778-2784
    • (2005) Chem. Commun. , vol.22 , pp. 2778-2784
    • Joy, A.1    Schuster, G.B.2
  • 6
    • 0032539233 scopus 로고    scopus 로고
    • Sequence dependent long range hole transport in DNA
    • Meggers E., Michel-Beyerle M.E., and Giese B. Sequence dependent long range hole transport in DNA. J. Am. Chem. Soc. 120 (1998) 12950-12955
    • (1998) J. Am. Chem. Soc. , vol.120 , pp. 12950-12955
    • Meggers, E.1    Michel-Beyerle, M.E.2    Giese, B.3
  • 7
    • 0033545293 scopus 로고    scopus 로고
    • Electronic motion in DNA
    • Ratner M. Electronic motion in DNA. Nature 397 (1999) 480-481
    • (1999) Nature , vol.397 , pp. 480-481
    • Ratner, M.1
  • 9
    • 4243545125 scopus 로고    scopus 로고
    • Oxidative nucleobase modifications leading to strand scission
    • Burrows C.J., and Muller J.G. Oxidative nucleobase modifications leading to strand scission. Chem. Rev. 98 (1998) 1109-1151
    • (1998) Chem. Rev. , vol.98 , pp. 1109-1151
    • Burrows, C.J.1    Muller, J.G.2
  • 10
    • 0035979333 scopus 로고    scopus 로고
    • Long-range oxidative damage in DNA/RNA duplexes
    • Odom D.T., and Barton J.K. Long-range oxidative damage in DNA/RNA duplexes. Biochemistry 40 (2001) 8727-8737
    • (2001) Biochemistry , vol.40 , pp. 8727-8737
    • Odom, D.T.1    Barton, J.K.2
  • 11
    • 0035850541 scopus 로고    scopus 로고
    • Influence of intervening mismatches on long-range guanine oxidation in DNA duplexes
    • Bhattacharya P.K., and Barton J.K. Influence of intervening mismatches on long-range guanine oxidation in DNA duplexes. J. Am. Chem. Soc. 123 (2001) 8649-8656
    • (2001) J. Am. Chem. Soc. , vol.123 , pp. 8649-8656
    • Bhattacharya, P.K.1    Barton, J.K.2
  • 12
    • 0031005140 scopus 로고    scopus 로고
    • Sensitivity of DNA-mediated electron transfer to the intervening stack: a probe for the integrity of the DNA base stack
    • Hall D.B., and Barton J.K. Sensitivity of DNA-mediated electron transfer to the intervening stack: a probe for the integrity of the DNA base stack. J. Am. Chem. Soc. 123 (2001) 5045-5046
    • (2001) J. Am. Chem. Soc. , vol.123 , pp. 5045-5046
    • Hall, D.B.1    Barton, J.K.2
  • 13
    • 0037032244 scopus 로고    scopus 로고
    • 2-Aminopurine: a probe of structural dynamics and charge flow in DNA and DNA:RNA hybrids
    • O'Neill M.A., and Barton J.K. 2-Aminopurine: a probe of structural dynamics and charge flow in DNA and DNA:RNA hybrids. J. Am. Chem. Soc. 124 (2002) 13053-13066
    • (2002) J. Am. Chem. Soc. , vol.124 , pp. 13053-13066
    • O'Neill, M.A.1    Barton, J.K.2
  • 15
    • 0033537048 scopus 로고    scopus 로고
    • Radical cation transport and reaction in RNA/DNA hybrid duplexes: effect of global structure on reactivity
    • Sartor V., Henderson P.T., and Schuster G.B. Radical cation transport and reaction in RNA/DNA hybrid duplexes: effect of global structure on reactivity. J. Am. Chem. Soc. 121 (1999) 11027-11033
    • (1999) J. Am. Chem. Soc. , vol.121 , pp. 11027-11033
    • Sartor, V.1    Henderson, P.T.2    Schuster, G.B.3
  • 16
    • 0033927772 scopus 로고    scopus 로고
    • Robust charge transport in DNA double crossover assemblies
    • Odom D.T., Dill E.A., and Barton J.K. Robust charge transport in DNA double crossover assemblies. Chem. Biol. 7 (2000) 475-481
    • (2000) Chem. Biol. , vol.7 , pp. 475-481
    • Odom, D.T.1    Dill, E.A.2    Barton, J.K.3
  • 17
    • 0036569610 scopus 로고    scopus 로고
    • DNA conformational switches as sensitive electronic sensors of analytes
    • Fahlman R.P., and Sen D. DNA conformational switches as sensitive electronic sensors of analytes. J. Am. Chem. Soc. 124 (2002) 4610-4616
    • (2002) J. Am. Chem. Soc. , vol.124 , pp. 4610-4616
    • Fahlman, R.P.1    Sen, D.2
  • 18
    • 0024819449 scopus 로고
    • Synthesis of small RNAs using T7 RNA polymerase
    • Milligan J.F., and Uhlenbeck O.C. Synthesis of small RNAs using T7 RNA polymerase. Methods Enzymol. 180 (1989) 51-62
    • (1989) Methods Enzymol. , vol.180 , pp. 51-62
    • Milligan, J.F.1    Uhlenbeck, O.C.2
  • 19
    • 0018846636 scopus 로고
    • Sequencing end-labeled DNA with base-specific chemical cleavages
    • Maxam A.M., and Gilbert W. Sequencing end-labeled DNA with base-specific chemical cleavages. Methods Enzymol. 65 (1980) 499-560
    • (1980) Methods Enzymol. , vol.65 , pp. 499-560
    • Maxam, A.M.1    Gilbert, W.2
  • 20
    • 0018459544 scopus 로고
    • Direct chemical method for sequencing RNA
    • Peattie D.A. Direct chemical method for sequencing RNA. Proc. Natl. Acad. Sci. U.S.A. 76 (1979) 1760-1764
    • (1979) Proc. Natl. Acad. Sci. U.S.A. , vol.76 , pp. 1760-1764
    • Peattie, D.A.1
  • 21
    • 0032077545 scopus 로고    scopus 로고
    • Gel electrophoretic detection of 7,8-dihydro-8-oxoguanine and 7, 8-dihydro-8-oxoadenine via oxidation by Ir(IV)
    • Muller J.G., Duarte V., Hickerson R.P., and Burrows C.J. Gel electrophoretic detection of 7,8-dihydro-8-oxoguanine and 7, 8-dihydro-8-oxoadenine via oxidation by Ir(IV). Nucleic Acids Res. 26 (1998) 2247-2249
    • (1998) Nucleic Acids Res. , vol.26 , pp. 2247-2249
    • Muller, J.G.1    Duarte, V.2    Hickerson, R.P.3    Burrows, C.J.4
  • 22
    • 33846661460 scopus 로고    scopus 로고
    • The chemical stability of abasic RNA compared to abasic DNA
    • Kupfer P.A., and Leumann C.J. The chemical stability of abasic RNA compared to abasic DNA. Nucleic Acids Res. 35 (2007) 58-68
    • (2007) Nucleic Acids Res. , vol.35 , pp. 58-68
    • Kupfer, P.A.1    Leumann, C.J.2
  • 23
    • 0033485712 scopus 로고    scopus 로고
    • Long-range guanine damage in single-stranded DNA: charge transport through a duplex bridge and in a single-stranded overhang
    • Kan Y., and Schuster G.B. Long-range guanine damage in single-stranded DNA: charge transport through a duplex bridge and in a single-stranded overhang. J. Am. Chem. Soc. 121 (1999) 10857-10864
    • (1999) J. Am. Chem. Soc. , vol.121 , pp. 10857-10864
    • Kan, Y.1    Schuster, G.B.2
  • 24
    • 0035913290 scopus 로고    scopus 로고
    • Direct observation of hole transfer through DNA by hopping between adenine bases and by tunneling
    • Giese B., Amaudrut J., Köhler A.K., Spormann M., and Wessely S. Direct observation of hole transfer through DNA by hopping between adenine bases and by tunneling. Nature 412 (2001) 318-320
    • (2001) Nature , vol.412 , pp. 318-320
    • Giese, B.1    Amaudrut, J.2    Köhler, A.K.3    Spormann, M.4    Wessely, S.5
  • 25
    • 0033250747 scopus 로고    scopus 로고
    • Selective photocleavage of DNA and RNA by anthraquinone derivatives: targeting the single-strand region of hairpin structures
    • Fernandez-Saiz M., Henderson P.T., Wilson W.D., and Schuster G.B. Selective photocleavage of DNA and RNA by anthraquinone derivatives: targeting the single-strand region of hairpin structures. Photochem. Photobiol. 70 (1999) 847-852
    • (1999) Photochem. Photobiol. , vol.70 , pp. 847-852
    • Fernandez-Saiz, M.1    Henderson, P.T.2    Wilson, W.D.3    Schuster, G.B.4
  • 27
    • 0027934952 scopus 로고
    • 2,2-Diamino-4-[(3,5-di-O-acetyl-2-deoxy-beta-d-erythro-pentofuranosyl)amino]-5-(2H)-oxazolone: a novel and predominant radical oxidation product of 3′,5′-di-O-acetyl-2′-deoxyguanosine
    • Cadet J., Berger M., Buchko G.W., Joshi P.C., Raoul S., and Ravanat J.-L. 2,2-Diamino-4-[(3,5-di-O-acetyl-2-deoxy-beta-d-erythro-pentofuranosyl)amino]-5-(2H)-oxazolone: a novel and predominant radical oxidation product of 3′,5′-di-O-acetyl-2′-deoxyguanosine. J. Am. Chem. Soc. 116 (1994) 7403-7404
    • (1994) J. Am. Chem. Soc. , vol.116 , pp. 7403-7404
    • Cadet, J.1    Berger, M.2    Buchko, G.W.3    Joshi, P.C.4    Raoul, S.5    Ravanat, J.-L.6
  • 28
    • 0032578191 scopus 로고    scopus 로고
    • Product analysis of GG-specific photooxidation of DNA via electron transfer: 2-aminoimidazolone as a major guanine oxidation product
    • Kino K., Saito I., and Sugiyama H. Product analysis of GG-specific photooxidation of DNA via electron transfer: 2-aminoimidazolone as a major guanine oxidation product. J. Am. Chem. Soc. 120 (1998) 1373-1374
    • (1998) J. Am. Chem. Soc. , vol.120 , pp. 1373-1374
    • Kino, K.1    Saito, I.2    Sugiyama, H.3
  • 29
    • 0142009642 scopus 로고    scopus 로고
    • Long-distance radical cation reactions in DNA three-way junctions: inter-arm interaction and migration through the junction
    • Santhosh U., and Schuster G.B. Long-distance radical cation reactions in DNA three-way junctions: inter-arm interaction and migration through the junction. Nucleic Acids Res. 31 (2003) 5692-5699
    • (2003) Nucleic Acids Res. , vol.31 , pp. 5692-5699
    • Santhosh, U.1    Schuster, G.B.2
  • 30
    • 0035873468 scopus 로고    scopus 로고
    • Charge transport through DNA four-way junctions
    • Odom D.T., Dill E.A., and Barton J.K. Charge transport through DNA four-way junctions. Nucleic Acids Res. 29 (2001) 2026-2033
    • (2001) Nucleic Acids Res. , vol.29 , pp. 2026-2033
    • Odom, D.T.1    Dill, E.A.2    Barton, J.K.3
  • 31
    • 0037164001 scopus 로고    scopus 로고
    • The charge conduction properties of DNA Holliday junctions depend critically on the identity of the tethered photooxidant
    • Fahlman R.P., Sharma R.D., and Sen D. The charge conduction properties of DNA Holliday junctions depend critically on the identity of the tethered photooxidant. J. Am. Chem. Soc. 124 (2002) 12477-12485
    • (2002) J. Am. Chem. Soc. , vol.124 , pp. 12477-12485
    • Fahlman, R.P.1    Sharma, R.D.2    Sen, D.3
  • 32
    • 2942716983 scopus 로고    scopus 로고
    • DNA helix-stack switching as the basis for the design of versatile deoxyribosensors
    • Sankar C.G., and Sen D. DNA helix-stack switching as the basis for the design of versatile deoxyribosensors. J. Mol. Biol. 340 (2004) 459-467
    • (2004) J. Mol. Biol. , vol.340 , pp. 459-467
    • Sankar, C.G.1    Sen, D.2
  • 33
    • 33846308160 scopus 로고    scopus 로고
    • Electron hole flow patterns through the RNA-cleaving 8-17 deoxyribozyme yield unusual information about its structure and folding
    • Leung E.K., and Sen D. Electron hole flow patterns through the RNA-cleaving 8-17 deoxyribozyme yield unusual information about its structure and folding. Chem. Biol. 14 (2007) 41-51
    • (2007) Chem. Biol. , vol.14 , pp. 41-51
    • Leung, E.K.1    Sen, D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.