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Volumn 3, Issue 2, 2008, Pages

Non-uniform survival rate of heterodimerization links in the evolution of the yeast protein-protein interaction network

Author keywords

[No Author keywords available]

Indexed keywords

FUNGAL PROTEIN; HETERODIMER;

EID: 45749155655     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0001667     Document Type: Article
Times cited : (10)

References (44)
  • 1
    • 0034628508 scopus 로고    scopus 로고
    • A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
    • Uetz P, Giot L, Cagney G, Mansfield TA, Judson RS, et al. (2000) A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature 403: 623-627.
    • (2000) Nature , vol.403 , pp. 623-627
    • Uetz, P.1    Giot, L.2    Cagney, G.3    Mansfield, T.A.4    Judson, R.S.5
  • 2
    • 0035836765 scopus 로고    scopus 로고
    • A comprehensive two-hybrid analysis to explore the yeast protein interactome
    • Ito T, Chiba T, Ozawa R, Yoshida M, Hattori M, et al. (2001) A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc Natl Acad Sci USA 98: 4569-4574.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 4569-4574
    • Ito, T.1    Chiba, T.2    Ozawa, R.3    Yoshida, M.4    Hattori, M.5
  • 4
    • 9144264169 scopus 로고    scopus 로고
    • A map of the interactome network of the metazoan C. elegans
    • Li S, Armstrong CM, Bertin N, Ge H, Milstein S, et al. (2004) A map of the interactome network of the metazoan C. elegans. Science 303: 540-543.
    • (2004) Science , vol.303 , pp. 540-543
    • Li, S.1    Armstrong, C.M.2    Bertin, N.3    Ge, H.4    Milstein, S.5
  • 5
    • 0345600247 scopus 로고    scopus 로고
    • A protein interaction map of drosophila melanogaster
    • Giot L, Bader JS, Brouwer C, Chaudhuri A, Kuang B, et al. (2003) A protein interaction map of drosophila melanogaster. Science 302: 1727-1736.
    • (2003) Science , vol.302 , pp. 1727-1736
    • Giot, L.1    Bader, J.S.2    Brouwer, C.3    Chaudhuri, A.4    Kuang, B.5
  • 6
    • 0742305866 scopus 로고    scopus 로고
    • Network biology: Understanding the cell's functional organization
    • Barabasi AL, Oltvai ZN (2004) Network biology: understanding the cell's functional organization, Nat Rev Genet 5: 101-113.
    • (2004) Nat Rev Genet , vol.5 , pp. 101-113
    • Barabasi, A.L.1    Oltvai, Z.N.2
  • 8
    • 0034943378 scopus 로고    scopus 로고
    • The yeast protein interaction network evolves rapidly and contains few redundant genes
    • Wagner A (2001) The yeast protein interaction network evolves rapidly and contains few redundant genes. Mol Biol Evol 18: 1283-1292.
    • (2001) Mol Biol Evol , vol.18 , pp. 1283-1292
    • Wagner, A.1
  • 9
    • 0033539175 scopus 로고    scopus 로고
    • Albert R, Jeong H, Barabasi AL (1999) Diameter of the World-Wide Web. Nature 401: 130-131.
    • Albert R, Jeong H, Barabasi AL (1999) Diameter of the World-Wide Web. Nature 401: 130-131.
  • 11
    • 0034721164 scopus 로고    scopus 로고
    • Error and attack tolerance of complex networks
    • Albert Rjeong H, Barabasi AL (2000) Error and attack tolerance of complex networks. Nature 406: 378-382.
    • (2000) Nature , vol.406 , pp. 378-382
    • Albert Rjeong, H.1    Barabasi, A.L.2
  • 12
    • 0032482432 scopus 로고    scopus 로고
    • Collective dynamics of'small-world' networks
    • Watts DJ, Strogatz SH (1998) Collective dynamics of'small-world' networks. Nature 393: 440-442.
    • (1998) Nature , vol.393 , pp. 440-442
    • Watts, D.J.1    Strogatz, S.H.2
  • 14
    • 0035895239 scopus 로고    scopus 로고
    • The structure or scientific collaboration networks
    • Newman MEJ (2001) The structure or scientific collaboration networks. Proc Natl Acad Sci USA 98: 404-409.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 404-409
    • Newman, M.E.J.1
  • 18
    • 1842580761 scopus 로고    scopus 로고
    • Functional and topological characterization of protein interaction networks
    • Yook SH, Oltvai ZN, Barabasi AL (2004) Functional and topological characterization of protein interaction networks. Proteomics 4: 929-942.
    • (2004) Proteomics , vol.4 , pp. 929-942
    • Yook, S.H.1    Oltvai, Z.N.2    Barabasi, A.L.3
  • 19
    • 42749098473 scopus 로고    scopus 로고
    • Growing networks with local rotles: Preferential attachment, clustering hierarchy and degree correlations
    • Vazquez A (2003) Growing networks with local rotles: preferential attachment, clustering hierarchy and degree correlations. Phys Rev E 67: 056104.
    • (2003) Phys Rev E , vol.67 , pp. 056104
    • Vazquez, A.1
  • 20
    • 33947724499 scopus 로고    scopus 로고
    • Characterization of complex networks: A survey of measurements
    • Costa LF, Rodrigues FA, Travieso G, Boas V (2007) Characterization of complex networks: A survey of measurements. ADV PHYS 56: 167-242.
    • (2007) ADV PHYS , vol.56 , pp. 167-242
    • Costa, L.F.1    Rodrigues, F.A.2    Travieso, G.3    Boas, V.4
  • 21
    • 0037012880 scopus 로고    scopus 로고
    • Specificity and stability in topology of protein networks
    • Maslov S, Sneppen K (2002) Specificity and stability in topology of protein networks. Science 296: 910-913.
    • (2002) Science , vol.296 , pp. 910-913
    • Maslov, S.1    Sneppen, K.2
  • 22
  • 23
    • 0038483826 scopus 로고    scopus 로고
    • Emergence of scaling in random networks
    • Barabasi AL, Albert R (1999) Emergence of scaling in random networks. Science 286: 509-512.
    • (1999) Science , vol.286 , pp. 509-512
    • Barabasi, A.L.1    Albert, R.2
  • 24
    • 0037460091 scopus 로고    scopus 로고
    • Evolving protein interaction networks through gene duplication
    • Pastor-Satorras R, Smith E, Sole RV (2003) Evolving protein interaction networks through gene duplication. J Theor Biol 222: 199-210.
    • (2003) J Theor Biol , vol.222 , pp. 199-210
    • Pastor-Satorras, R.1    Smith, E.2    Sole, R.V.3
  • 25
    • 37649031137 scopus 로고    scopus 로고
    • Infinite-order percolation and giant fluctuations in a protein interaction network
    • Kim J, Krapivsky PL, Kahng B, Render S (2002) Infinite-order percolation and giant fluctuations in a protein interaction network. Phys Rev E 66: 055101.
    • (2002) Phys Rev E , vol.66 , pp. 055101
    • Kim, J.1    Krapivsky, P.L.2    Kahng, B.3    Render, S.4
  • 27
    • 17044458532 scopus 로고    scopus 로고
    • Some asymptotic properties of duplication graph
    • Raval A (2003) Some asymptotic properties of duplication graph. Phys Rev E 68: 066119.
    • (2003) Phys Rev E , vol.68 , pp. 066119
    • Raval, A.1
  • 28
    • 14744273317 scopus 로고    scopus 로고
    • Inferring network mechanisms: The Drosophila melanogaster protein interaction network
    • Middendorf M, Ziv E, Wiggins CH (2005) Inferring network mechanisms: The Drosophila melanogaster protein interaction network. Proc Natl Acad Sci USA 102: 3192-3197.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 3192-3197
    • Middendorf, M.1    Ziv, E.2    Wiggins, C.H.3
  • 31
    • 24044434446 scopus 로고    scopus 로고
    • Filtering high-throughput protein-protein interaction data using a combination of genomic features
    • Patil A, Nakamura H (2005) Filtering high-throughput protein-protein interaction data using a combination of genomic features. BMC Bioinformatics 6: 100.
    • (2005) BMC Bioinformatics , vol.6 , pp. 100
    • Patil, A.1    Nakamura, H.2
  • 32
    • 21244464335 scopus 로고    scopus 로고
    • Binding properties and evolution of homodimers in protein-protein interaction networks
    • Ispolatov I, Yuryev A, Mazo I, Maslov S (2005) Binding properties and evolution of homodimers in protein-protein interaction networks. Nucleic Acids Res 33: 3629-3635.
    • (2005) Nucleic Acids Res , vol.33 , pp. 3629-3635
    • Ispolatov, I.1    Yuryev, A.2    Mazo, I.3    Maslov, S.4
  • 33
    • 29144470990 scopus 로고    scopus 로고
    • Topology, tinkering and evolution of the human transcription factor networks
    • Rodriguez-Caso C, Medina MA, Sole RV (2005) Topology, tinkering and evolution of the human transcription factor networks. FEBS J 272: 6423-34.
    • (2005) FEBS J , vol.272 , pp. 6423-6434
    • Rodriguez-Caso, C.1    Medina, M.A.2    Sole, R.V.3
  • 34
    • 28944434076 scopus 로고    scopus 로고
    • Protein function, connectivity, and duplicability in yeast
    • Prachumwat A, Li WH (2006) Protein function, connectivity, and duplicability in yeast. Mol Biol Evol 23: 30-39.
    • (2006) Mol Biol Evol , vol.23 , pp. 30-39
    • Prachumwat, A.1    Li, W.H.2
  • 36
    • 0242284421 scopus 로고    scopus 로고
    • A simple dependence between protein evolution rate and the number of protein-protein interactions
    • Fraser HB (2003) A simple dependence between protein evolution rate and the number of protein-protein interactions. BMC Evol Biol 3: 11.
    • (2003) BMC Evol Biol , vol.3 , pp. 11
    • Fraser, H.B.1
  • 37
    • 16844363315 scopus 로고    scopus 로고
    • Modularity and evolutionary constraint on proteins
    • Fraser HB (2005) Modularity and evolutionary constraint on proteins. Nature Genetics 37: 351-352.
    • (2005) Nature Genetics , vol.37 , pp. 351-352
    • Fraser, H.B.1
  • 38
    • 0842291785 scopus 로고    scopus 로고
    • No simple dependence between protein evolution rate and the number of protein-protein interactions: Only the most prolific interactors tend to evolve slowly
    • Jordan IK, Wolf YI, Koonin EV (2003) No simple dependence between protein evolution rate and the number of protein-protein interactions: only the most prolific interactors tend to evolve slowly. BMC Evol Biol 3: 1.
    • (2003) BMC Evol Biol , vol.3 , pp. 1
    • Jordan, I.K.1    Wolf, Y.I.2    Koonin, E.V.3
  • 39
    • 0037058980 scopus 로고    scopus 로고
    • The average distances in random graphs with given expected degrees
    • Chung F, Lu L (2002) The average distances in random graphs with given expected degrees. Proc Natl Acad Sci USA 99: 15879-82.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 15879-15882
    • Chung, F.1    Lu, L.2
  • 40
    • 0037423295 scopus 로고    scopus 로고
    • Scale-free networks are ultrasmall
    • Cohen R, Haviln S (2003) Scale-free networks are ultrasmall. Phys Rev Lett 90: 058701.
    • (2003) Phys Rev Lett , vol.90 , pp. 058701
    • Cohen, R.1    Haviln, S.2
  • 41
    • 3042848952 scopus 로고    scopus 로고
    • Evidence for dynamically organized modularity in the yeast protein-protein interaction network
    • Han JD, Bertin N, Hao T, Goldberg DS, Berriz GF, et al. (2004) Evidence for dynamically organized modularity in the yeast protein-protein interaction network. Nature 430: 88-93.
    • (2004) Nature , vol.430 , pp. 88-93
    • Han, J.D.1    Bertin, N.2    Hao, T.3    Goldberg, D.S.4    Berriz, G.F.5
  • 43
    • 33846108255 scopus 로고    scopus 로고
    • Towards synthesis of a minimal cell
    • Forster AC, Church GM (2006) Towards synthesis of a minimal cell. Mol Syst Biol 2: 45.
    • (2006) Mol Syst Biol , vol.2 , pp. 45
    • Forster, A.C.1    Church, G.M.2
  • 44
    • 27944477692 scopus 로고    scopus 로고
    • Duplication-divergence model of protein interaction network
    • Ispolatov I, Krapivsky PL, Yuryev A (2005) Duplication-divergence model of protein interaction network. Phys Rev E 71: 061911.
    • (2005) Phys Rev E , vol.71 , pp. 061911
    • Ispolatov, I.1    Krapivsky, P.L.2    Yuryev, A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.