-
1
-
-
0343646338
-
-
Academic Press, Orlando, FL
-
E.C. Friedberg, T. Bonura, T. Cone, R. Simmons, C. Anderson, DNA Repair Mechanisms, Academic Press, Orlando, FL, 1978.
-
(1978)
DNA Repair Mechanisms
-
-
Friedberg, E.C.1
Bonura, T.2
Cone, T.3
Simmons, R.4
Anderson, C.5
-
2
-
-
0028675314
-
Reconstitution of the DNA base excision-repair pathway
-
Dianov G., Lindahl T. Reconstitution of the DNA base excision-repair pathway. Curr. Biol. 4:1994;1069-1076
-
(1994)
Curr. Biol.
, vol.4
, pp. 1069-1076
-
-
Dianov, G.1
Lindahl, T.2
-
3
-
-
0004228157
-
-
ASM Press, Washington, DC
-
E.C. Friedberg, G.C. Walker, W. Siede, DNA Repair and Mutagenesis, ASM Press, Washington, DC, 1995.
-
(1995)
DNA Repair and Mutagenesis
-
-
Friedberg, E.C.1
Walker, G.C.2
Siede, W.3
-
4
-
-
0030861915
-
DNA glycosylases in the base excision repair of DNA
-
Krokan H.E., Standal R., Slupphaug G. DNA glycosylases in the base excision repair of DNA. Biochem. J. 325:1997;1-16
-
(1997)
Biochem. J.
, vol.325
, pp. 1-16
-
-
Krokan, H.E.1
Standal, R.2
Slupphaug, G.3
-
5
-
-
0017392934
-
DNA N-glycosidases: Properties of uracil-DNA glycosidase from Escherichia coli
-
Lindahl T., Ljungquist S., Siegert W., Nyberg B., Sperens B. DNA N-glycosidases: properties of uracil-DNA glycosidase from Escherichia coli. J. Biol. Chem. 252:1977;3286-3294
-
(1977)
J. Biol. Chem.
, vol.252
, pp. 3286-3294
-
-
Lindahl, T.1
Ljungquist, S.2
Siegert, W.3
Nyberg, B.4
Sperens, B.5
-
7
-
-
0034576553
-
The alpha/beta fold uracil DNA glycosylases: A common origin with diverse fates
-
RESEARCH0007
-
L. Aravind, E.V. Koonin, The alpha/beta fold uracil DNA glycosylases: a common origin with diverse fates, Genome Biol., 1, RESEARCH0007, 2000.
-
Genome Biol.
, vol.1
, pp. 2000
-
-
Aravind, L.1
Koonin, E.V.2
-
8
-
-
0034734380
-
Lessons learned from structural results on uracil-DNA glycosylase
-
Parikh S.S., Putnam C.D., Tainer J.A. Lessons learned from structural results on uracil-DNA glycosylase. Mutat. Res. 460:2000;183-199
-
(2000)
Mutat. Res.
, vol.460
, pp. 183-199
-
-
Parikh, S.S.1
Putnam, C.D.2
Tainer, J.A.3
-
9
-
-
0034734383
-
Structure and function in the uracil-DNA glycosylase superfamily
-
Pearl L.H. Structure and function in the uracil-DNA glycosylase superfamily. Mutat. Res. 460:2000;165-181
-
(2000)
Mutat. Res.
, vol.460
, pp. 165-181
-
-
Pearl, L.H.1
-
10
-
-
0025150522
-
Structures and functions of DNA glycosylases
-
Sakumi K., Sekiguchi M. Structures and functions of DNA glycosylases. Mutat. Res. 236:1990;161-172
-
(1990)
Mutat. Res.
, vol.236
, pp. 161-172
-
-
Sakumi, K.1
Sekiguchi, M.2
-
11
-
-
0037163122
-
Mutational analysis of the uracil DNA glycosylase inhibitor protein and its interaction with Escherichia coli uracil DNA glycosylase
-
Acharya N., Roy S., Varshney U. Mutational analysis of the uracil DNA glycosylase inhibitor protein and its interaction with Escherichia coli uracil DNA glycosylase. J. Mol. Biol. 321:2002;579-590
-
(2002)
J. Mol. Biol.
, vol.321
, pp. 579-590
-
-
Acharya, N.1
Roy, S.2
Varshney, U.3
-
12
-
-
0038148669
-
Complexes of the uracil-DNA glycosylase inhibitor protein, Ugi, with Mycobacterium smegmatis and Mycobacterium tuberculosis uracil-DNA glycosylases
-
Acharya N., Kumar P., Varshney U. Complexes of the uracil-DNA glycosylase inhibitor protein, Ugi, with Mycobacterium smegmatis and Mycobacterium tuberculosis uracil-DNA glycosylases. Microbiology. 149:2003;1647-1658
-
(2003)
Microbiology
, vol.149
, pp. 1647-1658
-
-
Acharya, N.1
Kumar, P.2
Varshney, U.3
-
13
-
-
0026574664
-
Characterization of the Escherichia coli uracil-DNA glycosylase-inhibitor protein complex
-
Bennett S.E., Mosbaugh D.W. Characterization of the Escherichia coli uracil-DNA glycosylase-inhibitor protein complex. J. Biol. Chem. 267:1992;22512-22521
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 22512-22521
-
-
Bennett, S.E.1
Mosbaugh, D.W.2
-
14
-
-
0033605817
-
Protein mimicry of DNA from crystal structures of the uracil-DNA glycosylase inhibitor protein and its complex with Escherichia coli uracil-DNA glycosylase
-
Putnam C.D., Shroyer M.J., Lundquist A.J., Mol C.D., Arvai A.S., Mosbaugh D.W., Tainer J.A. Protein mimicry of DNA from crystal structures of the uracil-DNA glycosylase inhibitor protein and its complex with Escherichia coli uracil-DNA glycosylase. J. Mol. Biol. 287:1999;331-346
-
(1999)
J. Mol. Biol.
, vol.287
, pp. 331-346
-
-
Putnam, C.D.1
Shroyer, M.J.2
Lundquist, A.J.3
Mol, C.D.4
Arvai, A.S.5
Mosbaugh, D.W.6
Tainer, J.A.7
-
15
-
-
3643055084
-
X-ray analysis of a complex of Escherichia coli uracil DNA glycosylase (EcoUDG) with a proteinaceous inhibitor. The structure elucidation of a prokaryotic UDG
-
Ravishankar R., Bidya Sagar M., Roy S., Purnapatre K., Handa P., Varshney U., Vijayan M. X-ray analysis of a complex of Escherichia coli uracil DNA glycosylase (EcoUDG) with a proteinaceous inhibitor. The structure elucidation of a prokaryotic UDG. Nucl. Acids Res. 26:1998;4880-4887
-
(1998)
Nucl. Acids Res.
, vol.26
, pp. 4880-4887
-
-
Ravishankar, R.1
Bidya Sagar, M.2
Roy, S.3
Purnapatre, K.4
Handa, P.5
Varshney, U.6
Vijayan, M.7
-
16
-
-
0024587232
-
Uracil-DNA glycosylase inhibitor gene of bacteriophage PBS2 encodes a binding protein specific for uracil-DNA glycosylase
-
Wang Z., Mosbaugh D.W. Uracil-DNA glycosylase inhibitor gene of bacteriophage PBS2 encodes a binding protein specific for uracil-DNA glycosylase. J. Biol. Chem. 264:1989;1163-1171
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 1163-1171
-
-
Wang, Z.1
Mosbaugh, D.W.2
-
17
-
-
0035907352
-
The role of leucine 191 of Escherichia coli uracil DNA glycosylase in the formation of a highly stable complex with the substrate mimic, ugi, and in uracil excision from the synthetic substrates
-
Handa P., Roy S., Varshney U. The role of leucine 191 of Escherichia coli uracil DNA glycosylase in the formation of a highly stable complex with the substrate mimic, ugi, and in uracil excision from the synthetic substrates. J. Biol. Chem. 276:2001;17324-17331
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 17324-17331
-
-
Handa, P.1
Roy, S.2
Varshney, U.3
-
18
-
-
0030875780
-
Site-directed mutagenesis and characterization of uracil-DNA glycosylase inhibitor protein. Role of specific carboxylic amino acids in complex formation with Escherichia coli uracil-DNA glycosylase
-
Lundquist A.J., Beger R.D., Bennett S.E., Bolton P.H., Mosbaugh D.W. Site-directed mutagenesis and characterization of uracil-DNA glycosylase inhibitor protein. Role of specific carboxylic amino acids in complex formation with Escherichia coli uracil-DNA glycosylase. J. Biol. Chem. 272:1997;21408-21419
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 21408-21419
-
-
Lundquist, A.J.1
Beger, R.D.2
Bennett, S.E.3
Bolton, P.H.4
Mosbaugh, D.W.5
-
19
-
-
0345296914
-
Crystal structure of a thwarted mismatch glycosylase DNA repair complex
-
Barrett T.E., Scharer O.D., Savva R., Brown T., Jiricny J., Verdine G.L., Pearl L.H. Crystal structure of a thwarted mismatch glycosylase DNA repair complex. EMBO J. 18:1999;6599-6609
-
(1999)
EMBO J.
, vol.18
, pp. 6599-6609
-
-
Barrett, T.E.1
Scharer, O.D.2
Savva, R.3
Brown, T.4
Jiricny, J.5
Verdine, G.L.6
Pearl, L.H.7
-
20
-
-
0029805081
-
A new class of uracil-DNA glycosylases related to human thymine-DNA glycosylase
-
Gallinari P., Jiricny J. A new class of uracil-DNA glycosylases related to human thymine-DNA glycosylase. Nature. 383:1996;735-738
-
(1996)
Nature
, vol.383
, pp. 735-738
-
-
Gallinari, P.1
Jiricny, J.2
-
21
-
-
0027383758
-
The purification of a mismatch-specific thymine-DNA glycosylase from HeLa cells
-
Neddermann P., Jiricny J. The purification of a mismatch-specific thymine-DNA glycosylase from HeLa cells. J. Biol. Chem. 268:1993;21218-21224
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 21218-21224
-
-
Neddermann, P.1
Jiricny, J.2
-
22
-
-
0037124349
-
A novel uracil-DNA glycosylase with broad substrate specificity and an unusual active site
-
Sartori A.A., Fitz-Gibbon S., Yang H., Miller J.H., Jiricny J. A novel uracil-DNA glycosylase with broad substrate specificity and an unusual active site. EMBO J. 21:2002;3182-3191
-
(2002)
EMBO J.
, vol.21
, pp. 3182-3191
-
-
Sartori, A.A.1
Fitz-Gibbon, S.2
Yang, H.3
Miller, J.H.4
Jiricny, J.5
-
23
-
-
0345687185
-
Escherichia coli nucleoside diphosphate kinase is a uracil-processing DNA repair nuclease
-
Postel E.H., Abramczyk B.M. Escherichia coli nucleoside diphosphate kinase is a uracil-processing DNA repair nuclease. Proc. Natl. Acad. Sci. USA. 100:2003;13247-13252
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 13247-13252
-
-
Postel, E.H.1
Abramczyk, B.M.2
-
24
-
-
0025953631
-
Nucleoside diphosphate kinase from Escherichia coli its overproduction and sequence comparison with eukaryotic enzymes
-
Hama H., Almaula N., Lerner C.G., Inouye S., Inouye M. Nucleoside diphosphate kinase from Escherichia coli its overproduction and sequence comparison with eukaryotic enzymes. Gene. 105:1991;31-36
-
(1991)
Gene
, vol.105
, pp. 31-36
-
-
Hama, H.1
Almaula, N.2
Lerner, C.G.3
Inouye, S.4
Inouye, M.5
-
25
-
-
0029152617
-
Nucleoside diphosphate kinase from Escherichia coli
-
Almaula N., Lu Q., Delgado J., Belkin S., Inouye M. Nucleoside diphosphate kinase from Escherichia coli. J. Bacteriol. 177:1995;2524-2529
-
(1995)
J. Bacteriol.
, vol.177
, pp. 2524-2529
-
-
Almaula, N.1
Lu, Q.2
Delgado, J.3
Belkin, S.4
Inouye, M.5
-
26
-
-
0036742429
-
Escherichia coli strains (ndk) lacking nucleoside diphosphate kinase are powerful mutators for base substitutions and frameshifts in mismatch-repair- deficient strains
-
Miller J.H., Funchain P., Clendenin W., Huang T., Nguyen A., Wolff E., Yeung A., Chiang J.H., Garibyan L., Slupska M.M., et al. Escherichia coli strains (ndk) lacking nucleoside diphosphate kinase are powerful mutators for base substitutions and frameshifts in mismatch-repair-deficient strains. Genetics. 162:2002;5-13
-
(2002)
Genetics
, vol.162
, pp. 5-13
-
-
Miller, J.H.1
Funchain, P.2
Clendenin, W.3
Huang, T.4
Nguyen, A.5
Wolff, E.6
Yeung, A.7
Chiang, J.H.8
Garibyan, L.9
Slupska, M.M.10
-
27
-
-
0033795579
-
Metabolic functions of microbial nucleoside diphosphate kinases
-
Bernard M.A., Ray N.B., Olcott M.C., Hendricks S.P., Mathews C.K. Metabolic functions of microbial nucleoside diphosphate kinases. J. Bioenerg. Biomembr. 32:2000;259-267
-
(2000)
J. Bioenerg. Biomembr.
, vol.32
, pp. 259-267
-
-
Bernard, M.A.1
Ray, N.B.2
Olcott, M.C.3
Hendricks, S.P.4
Mathews, C.K.5
-
28
-
-
0029560507
-
The gene for nucleoside diphosphate kinase functions as a mutator gene in Escherichia coli
-
Lu Q., Zhang X., Almaula N., Mathews C.K., Inouye M. The gene for nucleoside diphosphate kinase functions as a mutator gene in Escherichia coli. J. Mol. Biol. 254:1995;337-341
-
(1995)
J. Mol. Biol.
, vol.254
, pp. 337-341
-
-
Lu, Q.1
Zhang, X.2
Almaula, N.3
Mathews, C.K.4
Inouye, M.5
-
29
-
-
0029941281
-
Adenylate kinase complements nucleoside diphosphate kinase deficiency in nucleotide metabolism
-
Lu Q., Inouye M. Adenylate kinase complements nucleoside diphosphate kinase deficiency in nucleotide metabolism. Proc. Natl. Acad. Sci. USA. 93:1996;5720-5725
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 5720-5725
-
-
Lu, Q.1
Inouye, M.2
-
30
-
-
0032508046
-
Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence
-
Cole S.T., Brosch R., Parkhill J., Garnier T., Churcher C., Harris D., Gordon S.V., Eiglmeier K., Gas S., Barry C.E. III, et al. Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. Nature. 393:1998;537-544
-
(1998)
Nature
, vol.393
, pp. 537-544
-
-
Cole, S.T.1
Brosch, R.2
Parkhill, J.3
Garnier, T.4
Churcher, C.5
Harris, D.6
Gordon, S.V.7
Eiglmeier, K.8
Gas, S.9
Barry III, C.E.10
-
31
-
-
0031692027
-
DNA repair in Mycobacterium tuberculosis. What have we learnt from the genome sequence?
-
Mizrahi V., Andersen S.J. DNA repair in Mycobacterium tuberculosis. What have we learnt from the genome sequence? Mol. Microbiol. 29:1998;1331-1339
-
(1998)
Mol. Microbiol.
, vol.29
, pp. 1331-1339
-
-
Mizrahi, V.1
Andersen, S.J.2
-
32
-
-
0042090471
-
Importance of uracil DNA glycosylase in Pseudomonas aeruginosa and Mycobacterium smegmatis, G+C-rich bacteria, in mutation prevention, tolerance to acidified nitrite, and endurance in mouse macrophages
-
Venkatesh J., Kumar P., Krishna P.S., Manjunath R., Varshney U. Importance of uracil DNA glycosylase in Pseudomonas aeruginosa and Mycobacterium smegmatis, G+C-rich bacteria, in mutation prevention, tolerance to acidified nitrite, and endurance in mouse macrophages. J. Biol. Chem. 278:2003;24350-24358
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 24350-24358
-
-
Venkatesh, J.1
Kumar, P.2
Krishna, P.S.3
Manjunath, R.4
Varshney, U.5
-
33
-
-
2342648051
-
Escherichia coli nucleoside diphosphate kinase does not act as a uracil-processing DNA repair nuclease
-
Bennett S.E., Chen C.Y., Mosbaugh D.W. Escherichia coli nucleoside diphosphate kinase does not act as a uracil-processing DNA repair nuclease. Proc. Natl. Acad. Sci. USA. 101:2004;6391-6396
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 6391-6396
-
-
Bennett, S.E.1
Chen, C.Y.2
Mosbaugh, D.W.3
-
34
-
-
0022358535
-
Isolation of insertion, deletion, and nonsense mutations of the uracil-DNA glycosylase (ung) gene of Escherichia coli K-12
-
Duncan B.K. Isolation of insertion, deletion, and nonsense mutations of the uracil-DNA glycosylase (ung) gene of Escherichia coli K-12. J. Bacteriol. 164:1985;689-695
-
(1985)
J. Bacteriol.
, vol.164
, pp. 689-695
-
-
Duncan, B.K.1
-
35
-
-
0032127151
-
Use of a coupled transcriptional system for consistent overexpression and purification of UDG-Ugi complex and Ugi from Escherichia coli
-
Roy S., Purnapatre K., Handa P., Boyanapalli M., Varshney U. Use of a coupled transcriptional system for consistent overexpression and purification of UDG-Ugi complex and Ugi from Escherichia coli. Protein Expres. Purif. 13:1998;155-162
-
(1998)
Protein Expres. Purif.
, vol.13
, pp. 155-162
-
-
Roy, S.1
Purnapatre, K.2
Handa, P.3
Boyanapalli, M.4
Varshney, U.5
-
37
-
-
0026589375
-
Generation of single-nucleotide repair patches following excision of uracil residues from DNA
-
Dianov G., Price A., Lindahl T. Generation of single-nucleotide repair patches following excision of uracil residues from DNA. Mol. Cell. Biol. 12:1992;1605-1612
-
(1992)
Mol. Cell. Biol.
, vol.12
, pp. 1605-1612
-
-
Dianov, G.1
Price, A.2
Lindahl, T.3
-
38
-
-
0028067520
-
Inefficient excision of uracil from loop regions of DNA oligomers by E. coli uracil DNA glycosylase
-
Kumar N.V., Varshney U. Inefficient excision of uracil from loop regions of DNA oligomers by E. coli uracil DNA glycosylase. Nucl. Acids Res. 22:1994;3737-3741
-
(1994)
Nucl. Acids Res.
, vol.22
, pp. 3737-3741
-
-
Kumar, N.V.1
Varshney, U.2
-
39
-
-
0004136246
-
-
Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
-
J. Sambrook, E.F. Fritsch, T. Maniatis, Molecular Cloning: A Laboratory Manual, 2nd ed., Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, 1989.
-
(1989)
Molecular Cloning: A Laboratory Manual, 2nd Ed.
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
40
-
-
0037293032
-
Cytotoxic activity of nucleoside diphosphate kinase secreted from Mycobacterium tuberculosis
-
Chopra P., Singh A., Koul A., Ramachandran S., Drlica K., Tyagi A.K., Singh Y. Cytotoxic activity of nucleoside diphosphate kinase secreted from Mycobacterium tuberculosis. Eur. J. Biochem. 270:2003;625-634
-
(2003)
Eur. J. Biochem.
, vol.270
, pp. 625-634
-
-
Chopra, P.1
Singh, A.2
Koul, A.3
Ramachandran, S.4
Drlica, K.5
Tyagi, A.K.6
Singh, Y.7
-
41
-
-
0025732374
-
Specificities and kinetics of uracil excision from uracil-containing DNA oligomers by Escherichia coli uracil DNA glycosylase
-
Varshney U., van de Sande J.H. Specificities and kinetics of uracil excision from uracil-containing DNA oligomers by Escherichia coli uracil DNA glycosylase. Biochemistry. 30:1991;4055-4061
-
(1991)
Biochemistry
, vol.30
, pp. 4055-4061
-
-
Varshney, U.1
Van De Sande, J.H.2
-
42
-
-
0019198357
-
Mutagenic deamination of cytosine residues in DNA
-
Duncan B.K., Miller J.H. Mutagenic deamination of cytosine residues in DNA. Nature. 287:1980;560-561
-
(1980)
Nature
, vol.287
, pp. 560-561
-
-
Duncan, B.K.1
Miller, J.H.2
-
43
-
-
0020461949
-
Specific mutator effects of ung (uracil-DNA glycosylase) mutations in Escherichia coli
-
Duncan B.K., Weiss B. Specific mutator effects of ung (uracil-DNA glycosylase) mutations in Escherichia coli. J. Bacteriol. 151:1982;750-755
-
(1982)
J. Bacteriol.
, vol.151
, pp. 750-755
-
-
Duncan, B.K.1
Weiss, B.2
|