Control of trichome branching by Chromatin Assembly Factor-1

BMC Plant Biology

Volumn 8, Issue , 2008, Pages

  Exner, Vivien ^a   Gruissem, Wilhelm ^a   Hennig, Lars ^a  

^a ETH ZURICH   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMALIA; ARABIDOPSIS;

ARABIDOPSIS PROTEIN; CHROMATIN ASSEMBLY FACTOR I; DNA BINDING PROTEIN; FAS PROTEIN, ARABIDOPSIS; HISTONE; NONHISTONE PROTEIN; PLANT DNA; STICHEL PROTEIN, ARABIDOPSIS; SUCROSE;

ARABIDOPSIS; ARTICLE; BIOLOGICAL MODEL; CELL DIFFERENTIATION; CYTOLOGY; DRUG EFFECT; GENE EXPRESSION REGULATION; GENETIC EPISTASIS; GENETICS; HISTOLOGY; METABOLISM; MUTATION; PHENOTYPE; PLANT LEAF; PLOIDY; UPREGULATION;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; CELL DIFFERENTIATION; CHROMOSOMAL PROTEINS, NON-HISTONE; DNA, PLANT; DNA-BINDING PROTEINS; EPISTASIS, GENETIC; GENE EXPRESSION REGULATION, PLANT; HISTONES; MODELS, BIOLOGICAL; MUTATION; PHENOTYPE; PLANT LEAVES; PLOIDIES; SUCROSE; UP-REGULATION;

EID: 44949192769     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/1471-2229-8-54     Document Type: Article

References (67)

1. Histone modification and the control of heterochromatic gene silencing in Drosophila. A Ebert S Lein G Schotta G Reuter, Chromosome Res 2006 14 377 392 10.1007/s10577-006-1066-1 16821134
2. Many players, one goal: how chromatin states are inherited during cell division. R Santoro F De Lucia, Biochem Cell Biol 2005 83 332 343 10.1139/o05-021 15959559
3. Chromatin-remodeling and memory factors. New regulators of plant development. JC Reyes L Hennig W Gruissem, Plant Physiol 2002 130 1090 1101 12427976 10.1104/pp.006791
4. Histone chaperones, a supporting role in the limelight. A Loyola G Almouzni, Biochim Biophys Acta 2004 1677 3 11 15020040
5. Chromatin challenges during DNA replication and repair. A Groth W Rocha A Verreault G Almouzni, Cell 2007 128 721 733 10.1016/j.cell.2007.01.030 17320509
6. Chromatin assembly during SV40 DNA replication in vitro. B Stillman, Cell 1986 45 555 565 10.1016/0092-8674(86)90287-4 3011272
7. Purification and characterization of CAF-I, a human cell factor required for chromatin assembly during DNA replication in vitro. S Smith B Stillman, Cell 1989 58 15 25 10.1016/0092-8674(89)90398-X 2546672
8. Ultraviolet radiation sensitivity and reduction of telomeric silencing in Saccharomyces cerevisiae cells lacking Chromatin Assembly Factor-I. PD Kaufman R Kobayashi B Stillman, Genes Dev 1997 11 345 357 10.1101/gad.11.3.345 9030687
9. Nucleosome assembly by a complex of CAF-1 and acetylated histones H3/H4. A Verreault PD Kaufman R Kobayashi B Stillman, Cell 1996 87 95 104 10.1016/S0092-8674(00)81326-4 8858152
10. Assembly of regularly spaced nucleosome arrays by Drosophila chromatin assembly factor 1 and a 56-kDa histone-binding protein. M Bulger T Ito RT Kamakaka JT Kadonaga, Proc Natl Acad Sci USA 1995 92 11726 11730 8524837 10.1073/pnas.92.25.11726
11. Postreplicative chromatin assembly by Drosophila and human Chromatin Assembly Factor 1. RT Kamakaka M Bulger PD Kaufman B Stillman JT Kadonaga, Mol Cell Biol 1996 16 810 817 8622682
12. The p55 subunit of Drosophila chromatin assembly factor 1 is homologous to a histone deacetylase-associated protein. JK Tyler M Bulger RT Kamakaka R Kobayashi JT Kadonaga, Mol Cell Biol 1996 16 6149 6159 8887645
13. FASCIATA genes for chromatin assembly factor-1 in Arabidopsis maintain the cellular organization of apical meristems. H Kaya KI Shibahara KI Taoka M Iwabuchi B Stillman T Araki, Cell 2001 104 131 142 10.1016/S0092-8674(01)00197-0 11163246
14. A conserved family of WD-40 proteins binds to the retinoblastoma protein in both plants and animals. RA Ach P Taranto W Gruissem, Plant Cell 1997 9 1595 1606 9338962 10.1105/tpc.9.9.1595
15. RLF2, a subunit of yeast chromatin assembly factor-I, is required for telomeric chromatin function in vivo. S Enomoto PD McCune-Zierath M Gerami-Nejad MA Sanders J Berman, Genes Dev 1997 11 358 370 10.1101/gad.11.3.358 9030688
16. The yeast Cac1 protein is required for the stable inheritance of transcriptionally repressed chromatin at telomeres. EK Monson D de Bruin VA Zakian, Proc Natl Acad Sci USA 1997 94 13081 13086 9371803 10.1073/pnas.94.24. 13081
17. Chromatin Assembly Factor I contributes to the maintenance, but not the re-establishment, of silencing at the yeast silent mating loci. S Enomoto J Berman, Genes Dev 1998 12 219 232 9436982 10.1101/gad.12.2.219
18. A genetic screen for ribosomal DNA silencing defects identifies multiple DNA replication and chromatin-modulating factors. JS Smith E Caputo JD Boeke, Mol Cell Biol 1999 19 3184 3197 10082585
19. Duplication and maintenance of heterochromatin domains. A Taddei D Roche JB Sibarita BM Turner G Almouzni, J Cell Biol 1999 147 1153 1166 10601331 10.1083/jcb.147.6.1153
20. Role of Saccharomyces cerevisiae Chromatin Assembly Factor-I in repair of ultraviolet radiation damage in vivo. JC Game PD Kaufman, Genetics 1999 151 485 497 9927445
21. The histone variant H3.3 marks active chromatin by replication- independent nucleosome assembly. K Ahmad S Henikoff, Mol Cell 2002 9 1191 1200 10.1016/S1097-2765(02)00542-7 12086617
22. Histone H3.1 and H3.3 complexes mediate nucleosome assembly pathways dependent or independent of DNA synthesis. H Tagami D Ray-Gallet G Almouzni Y Nakatani, Cell 2004 116 51 61 10.1016/S0092-8674(03)01064-X 14718166
23. Genome-scale profiling of histone H3.3 replacement patterns. Y Mito JG Henikoff S Henikoff, Nat Genet 2005 37 1090 1097 10.1038/ng1637 16155569
24. Assembly of variant histones into chromatin. S Henikoff K Ahmad, Annu Rev Cell Dev Biol 2005 21 133 153 10.1146/annurev.cellbio.21.012704.133518 16212490
25. Nucleosome stability mediated by histone variants H3.3 and H2A.Z. C Jin G Felsenfeld, Genes Dev 2007 21 1519 1529 17575053 10.1101/gad.1547707
26. CAF-1 is essential for heterochromatin organization in pluripotent embryonic cells. M Houlard S Berlivet AV Probst JP Quivy P Hery G Almouzni M Gerard, PLoS Genet 2006 2 e181 17083276 10.1371/journal.pgen.0020181
27. A truncated form of the human CAF-1 p150 subunit impairs the maintenance of transcriptional gene silencing in mammalian cells. T Tchenio JF Casella T Heidmann, Mol Cell Biol 2001 21 1953 1961 11238931 10.1128/MCB.21.6.1953-1961. 2001
28. Chromatin Assembly Factor 1 is essential and couples chromatin assembly to DNA replication in vivo. M Hoek B Stillman, Proc Natl Acad Sci USA 2003 100 12183 12188 14519857 10.1073/pnas.1635158100
29. Silencing of Chromatin Assembly Factor 1 in human cells leads to cell death and loss of chromatin assembly during DNA synthesis. A Nabatiyan T Krude, Mol Cell Biol 2004 24 2853 2862 15024074 10.1128/MCB.24.7.2853-2862.2004
30. Defective S phase chromatin assembly causes DNA damage, activation of the S phase checkpoint, and S phase arrest. X Ye AA Franco H Santos DM Nelson PD Kaufman PD Adams, Mol Cell 2003 11 341 351 10.1016/S1097-2765(03)00037-6 12620223
31. Dimerization of the largest subunit of Chromatin Assembly Factor 1: importance in vitro and during Xenopus early development. JP Quivy P Grandi G Almouzni, EMBO J 2001 20 2015 2027 11296234 10.1093/emboj/20.8.2015
32. CAF-1 is essential for Drosophila development and involved in the maintenance of epigenetic memory. Y Song F He G Xie X Guo Y Xu Y Chen X Liang I Stagljar D Egli J Ma R Jiao, Dev Biol 2007 311 213 222 10.1016/j.ydbio.2007.08. 039 17916346
33. Mutation of zebrafish caf-1b results in S phase arrest, defective differentiation, and p53-mediated apoptosis during organogenesis. S Fischer S Prykhozhij MJ Rau CJ Neumann, Cell Cycle 2007 6 2962 2969 18156805
34. E2F regulates FASCIATA1, a chromatin assembly gene whose loss switches on the endocycle and activates gene expression by changing the epigenetic status. E Ramirez-Parra C Gutierrez, Plant Physiol 2007 144 105 120 17351056 10.1104/pp.106.094979
35. Radiation induced mutants showing changed inflorescence characteristics. E Reinholz, Arab Inf Serv 1966 3 19 20
36. Characterisation of three shoot apical meristem mutants of Arabidopsis thaliana. H Leyser I Furner, Development 1992 116 397 403
37. Fasciation: its meaning and origin. W Worsdell, New Phytol 1905 4 55 74 10.1111/j.1469-8137.1905.tb05881.x
38. Arabidopsis MSI1 is a component of the MEA/FIE Polycomb group complex and required for seed development. C Köhler L Hennig R Bouveret J Gheyselinck U Grossniklaus W Gruissem, EMBO J 2003 22 4804 4814 12970192 10.1093/emboj/cdg444
39. Polycomb group proteins function in the female gametophyte to determine seed development in plants. O Leroy L Hennig H Breuninger T Laux C Köhler, Development 2007 134 3639 3648 10.1242/dev.009027 17855429
40. Functional genomic analysis of CAF-1 mutants in Arabidopsis thaliana. N Schönrock V Exner A Probst W Gruissem L Hennig, J Biol Chem 2006 281 9560 9568 10.1074/jbc.M513426200 16452472
41. Chromatin Assembly Factor 1 ensures the stable maintenance of silent chromatin states in Arabidopsis. T Ono H Kaya S Takeda M Abe Y Ogawa M Kato T Kakutani O Mittelsten Scheid T Araki K Shibahara, Genes Cells 2006 11 153 162 10.1111/j.1365-2443.2006.00928.x 16436052
42. Increased frequency of homologous recombination and T-DNA integration in Arabidopsis CAF-1 mutants. M Endo Y Ishikawa K Osakabe S Nakayama H Kaya T Araki K Shibahara K Abe H Ichikawa L Valentine B Hohn S Toki, EMBO J 2006 25 5579 5590 17110925 10.1038/sj.emboj.7601434
43. The Chromatin Assembly Factor subunit FASCIATA1 is involved in homologous recombination in plants. A Kirik A Pecinka E Wendeler B Reiss, Plant Cell 2006 18 2431 2442 16980538 10.1105/tpc.106.045088
44. Chromatin assembly factor CAF-1 is required for cellular differentiation during plant development. V Exner P Taranto N Schönrock W Gruissem L Hennig, Development 2006 133 4163 4172 10.1242/dev.02599 17021044
45. Plant pubescence: an ecological perspective. H Johnson, Bot Rev 1975 41 233 258 10.1007/BF02860838
46. Experimental manipulation of putative selective agents provides evidence for the role of natural enemies in the evolution of plant defense. R Mauricio M Rausher, Evolution 1997 51 1435 1444 10.2307/2411196
47. Epidermal pattern formation in the root and shoot of Arabidopsis. S Schellmann M Hülskamp J Uhrig, Biochem Soc Trans 2007 35 146 148 10.1042/BST0350146 17233622
48. Epidermal differentiation: trichomes in Arabidopsis as a model system. S Schellmann M Hülskamp, Int J Dev Biol 2005 49 579 584 10.1387/ijdb.051983ss 16096966
49. The Arabidopsis STICHEL gene is a regulator of trichome branch number and encodes a novel protein. H Ilgenfritz D Bouyer A Schnittger J Mathur V Kirik B Schwab NH Chua G Jürgens M Hülskamp, Plant Physiol 2003 131 643 655 12586888 10.1104/pp.014209
50. Control of plant development and gene expression by sugar signaling. SI Gibson, Curr Opin Plant Biol 2005 8 93 102 10.1016/j.pbi.2004.11.003 15653406
51. Sugar sensing and signaling in plants: conserved and novel mechanisms. F Rolland E Baena-Gonzalez J Sheen, Annu Rev Plant Biol 2006 57 675 709 10.1146/annurev.arplant.57.032905.105441 16669778
52. The HECT ubiquitin-protein ligase (UPL) family in Arabidopsis: UPL3 has a specific role in trichome development. BP Downes RM Stupar DJ Gingerich RD Vierstra, Plant J 2003 35 729 742 10.1046/j.1365-313X.2003.01844.x 12969426
53. The Arabidopsis KAKTUS gene encodes a HECT protein and controls the number of endoreduplication cycles. A El Refy D Perazza L Zekraoui JG Valay N Bechtold S Brown M Hülskamp M Herzog JM Bonneville, Mol Genet Genomics 2003 270 403 414 10.1007/s00438-003-0932-1 14530964
54. Essential role of Chromatin Assembly Factor-1-mediated rapid nucleosome assembly for DNA replication and cell division in vertebrate cells. Y Takami T Ono T Fukagawa K Shibahara T Nakayama, Mol Biol Cell 2007 18 129 141 17065558 10.1091/mbc.E06-05-0426
55. Cell morphogenesis of trichomes in Arabidopsis: differential control of primary and secondary branching by branch initiation regulators and cell growth. U Folkers J Berger M Hülskamp, Development 1997 124 3779 3786 9367433
56. Marking histone H3 variants: how, when and why? A Loyola G Almouzni, Trends Biochem Sci 2007 32 425 433 10.1016/j.tibs.2007.08.004 17764953
57. Trichome cell growth in Arabidopsis thaliana can be derepressed by mutations in at least five genes. D Perazza M Herzog M Hülskamp S Brown AM Dorne JM Bonneville, Genetics 1999 152 461 476 10224275
58. Molecular genetic analysis of trichome development in Arabidopsis. MD Marks, Annu Rev Plant Physiol Plant Mol Biol 1997 48 137 163 10.1146/annurev.arplant.48.1.137 15012260
59. Plant trichomes: a model for cell differentiation. M Hülskamp, Nat Rev Mol Cell Biol 2004 5 471 480 10.1038/nrm1404 15173826
60. Sugar control of the plant cell cycle: differential regulation of Arabidopsis D-type cyclin gene expression. C Riou-Khamlichi M Menges JM Healy JA Murray, Mol Cell Biol 2000 20 4513 4521 10848578 10.1128/MCB.20.13.4513-4521. 2000
61. Effects of sucrose on polyploidization in early callus cultures of Solanum tuberosum. L Pijnacker M Ferwerda, Plant Cell 1990 21 153 17
62. EMS- and radiation-induced mutation frequencies at individual loci in Arabidopsis thaliana (L.) Heynh. M Koornneef LW Dellaert VeJ van der, Mutat Res 1982 93 109 123 7062928
63. GL3 encodes a bHLH protein that regulates trichome development in Arabidopsis through interaction with GL1 and TTG1. CT Payne F Zhang AM Lloyd, Genetics 2000 156 1349 1362 11063707
64. SIAMESE, a gene controlling the endoreduplication cell cycle in Arabidopsis thaliana trichomes. JD Walker DG Oppenheimer J Concienne JC Larkin, Development 2000 127 3931 3940 10952891
65. Arabidopsis MSI1 is required for epigenetic maintenance of reproductive development. L Hennig P Taranto M Walser N Schönrock W Gruissem, Development 2003 130 2555 2565 10.1242/dev.00470 12736201
66. Q-Gene: processing quantitative real-time RT-PCR data. P Simon, Bioinformatics 2003 19 1439 1440 10.1093/bioinformatics/btg157 12874059
67. Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. T Czechowski M Stitt T Altmann MK Udvardi WR Scheible, Plant Physiol 2005 139 5 17 16166256 10.1104/pp.105.063743