The HECT ubiquitin-protein ligase (UPL) family in Arabidopsis: UPL3 has a specific role in trichome development

Plant Journal

Volumn 35, Issue 6, 2003, Pages 729-742

  Downes, Brian P ^a   Stupar, Robert M ^a   Gingerich, Derek J ^a   Vierstra, Richard D ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

Arabidopsis; Endoreplication; Gibberellin; HECT ubiquitin ligase; Trichome; Ubiquitin

Indexed keywords

CHEMICAL MODIFICATION; DATA REDUCTION; ENZYME KINETICS; PROTEINS;

UBIQUITINATION;

PLANTS (BOTANY);

ARABIDOPSIS; ARABIDOPSIS PROTEINS; BASE SEQUENCE; DATABASES, PROTEIN; DNA PRIMERS; LIGASES; PEPTIDE HYDROLASES; PHENOTYPE; PHYLOGENY; PROTEASOME ENDOPEPTIDASE COMPLEX; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; UBIQUITIN-PROTEIN LIGASES;

ARABIDOPSIS; ARABIDOPSIS THALIANA; ARMADILLO; EMBRYOPHYTA; EUKARYOTA;

EID: 0141567486     PISSN: 09607412     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-313X.2003.01844.x     Document Type: Article

References (53)

1. Bates, P.W. and Vierstra, R.D. (1999) UPL1 and 2, two 405-kDa ubiquitin-protein ligases from Arabidopsis thaliana related to the HECT-domain protein family. Plant J. 20, 183-195.
2. Busse, J.S. and Evert, R.F. (1999) Pattern of differentiation of the first vascular elements in the embryo and seedling of Arabidopsis thaliana. Int. J. Plant Sci. 160, 1-13.
3. Fu, H., Doelling, J.H., Arendt, C.S., Hochstrasser, M. and Vierstra, R.D. (1998a) Molecular organization of the 20S proteasome gene family from Arabidopsis thaliana. Genetics, 149, 677-692.
4. Fu, H., Sadis, S., Rubin, D.M., Glickman, M., van Nocker, S., Finley, D. and Vierstra, R.D. (1998b) Multiubiquitin chain binding and protein degradation are mediated by distinct domains within the 26S proteasome subunit Mcb1. J. Biol. Chem. 273, 1970-1981.
5. Gagne, J.M., Downes, B.P., Shiu, S.H., Durski, A.M. and Vierstra, R.D. (2002) The F-box subunit of the SCF E3 complex is encoded by a diverse superfamily of genes in Arabidopsis. Proc. Natl. Acad. Sci. USA, 99, 11519-11524.
6. Gitan, R.S. and Eide, D.J. (2000) Zinc-regulated ubiquitin conjugation signals endocytosis of the yeast ZRT1 zinc transporter. Biochem. J. 346, 329-336.
7. Gocal, G.F.W., Sheldon, C.C., Gubler, F. et al. (2001) GAMYB-like genes, flowering, and gibberellin signaling in Arabidopsis. Plant Physiol. 127, 1682-1693.
8. Harty, R.N., Brown, M.E., Wang, G., Huibregtse, J. and Hayes, F.P. (2000) A PPxY motif within the VP40 protein of Ebola virus interacts physically and functionally with a ubiquitin ligase: implications for filovirus budding. Proc. Natl. Acad. Sci. USA, 97, 13871-13876.
9. Harvey, K.F. and Kumar, S. (1999) Nedd4-like proteins: an emerging family of ubiquitin-protein ligases implicated in diverse cellular functions. Trends Cell Biol. 9, 166-169.
10. Hein, C., Springael, J.Y., Volland, C., Haguenauer-Tsapis, R. and Andre, B. (1995) NPI1, an essential yeast gene involved in induced degradation of Gap1 and Fur4 permeases, encodes the Rsp5 ubiquitin-protein ligase. Mol. Microbiol. 18, 77-87.
11. Hellmann, H. and Estelle, M. (2002) Plant development: regulation by protein degradation. Science, 297, 793-797.
12. Hershko, A. and Ciechanover, A. (1998) The ubiquitin system. Annu. Rev. Biochem. 67, 425-479.
13. Hofmann, K. and Bucher, P. (1996) The UBA domain: a sequence motif present in multiple enzyme classes of the ubiquitination pathway. Trends Biochem. Sci. 21, 172-173.
14. Hofmann, K. and Falquet, L. (2001) A ubiquitin-interacting motif conserved in components of the proteasomal and lysosomal protein degradation systems. Trends Biochem. Sci. 26, 347-350.
15. Holmes, T.J., Bhattacharyya, S., Cooper, J.A., Hanzel, D., Krishnamurthi, V., Lin, W., Roysam, B., Szarowski, D.H. and Turner, J.N. (1995) Light microscopic images reconstructed by maximum likelihood deconvolution. In Handbook of Biological Confocal Microscopy (Pawley, J.B., ed.). New York: Plenum Press, pp. 389-402.
16. Huang, L., Kinnucan, E., Wang, G., Beaudenon, S., Howley, P.M., Huibregtse, J.M. and Pavletich, N.P. (1999) Structure of an E6AP-UbcH7 complex: insights into ubiquitination by the E2-E3 enzyme cascade. Science, 286, 1321-1326.
17. Huibregtse, J.M., Scheffner, M., Beaudenon, S. and Howley, P.M. (1995) A family of proteins structurally and functionally related to the E6-AP ubiquitin-protein ligase. Proc. Natl. Acad. Sci. USA, 92, 2563-2567.
18. Huibregtse, J.M., Yang, J.C. and Beaudenon, S.L. (1997) The large subunit of RNA polymerase II is a substrate of the Rsp5 ubiquitin-protein ligase. Proc. Natl. Acad. Sci. USA, 94, 3656-3661.
19. Hulskamp, M., Misera, S. and Jurgens, G. (1994) Genetic dissection of trichome cell development in Arabidopsis. Cell, 76, 555-566.
20. Ilgenfritz, H., Bouyer, D., Schnittger, A., Mathur, J., Kirik, V., Schwab, B., Chua, N., Jurgens, G. and Hulskamp, M. (2003) Arabidopsis STICHEL gene is a regulator of trichome branch number and encodes a novel protein. Plant Physiol. 131, 643-655.
21. Kosarev, P., Mayer, K.F. and Hardtke, C.S. (2002) Evaluation and classification of RING-finger domains encoded by the Arabidopsis genome. Genome Biol. 3, 1-12.
22. Krysan, P.J., Young, J.C. and Sussman, M.R. (1999) T-DNA as an insertional mutagen in Arabidopsis. Plant Cell, 11, 2283-2290.
23. Kumar, S., Kao, W.H. and Howley, P.M. (1997) Physical interaction between specific E2 and HECT E3 enzymes determines functional cooperativity. J. Biol. Chem. 272, 13548-13554.
24. Kumar, S., Talis, A.L. and Howley, P.M. (1999) Identification of HHR23A as a substrate for E6-associated protein-mediated ubiquitination. J. Biol. Chem. 274, 18785-18792.
25. Lee, J.W., Choi, H.S., Gyuris, J., Brent, R. and Moore, D.D. (1995) Two classes of proteins dependent on either the presence or absence of thyroid hormone for interaction with the thyroid hormone receptor. Mol. Endocrinol. 9, 243-254.
26. Leggett, D.S., Hanna, J., Borodovsky, A., Crosas, B., Schmidt, M., Baker, R.T., Walz, T., Ploegh, H. and Finley, D. (2002) Multiple associated proteins regulate proteasome structure and function. Mol. Cell, 10, 495-507.
27. Letunic, I., Goodstadt, L., Dickens, N.J., Doerks, T., Schultz, J., Mott, R., Ciccarelli, F., Copley, R.R., Ponting, C.P. and Bork, P. (2002) Recent improvements to the SMART domain-based sequence annotation resource. Nucl. Acids Res. 30, 242-244.
28. Luo, D. and Oppenheimer, D.G. (1999) Genetic control of trichome branch number in Arabidopsis: the roles of the FURCA loci. Development, 126, 5547-5557.
29. Matsuura, T., Sutcliffe, J.S., Fang, P., Galjaard, R.J., Jiang, Y.H., Benton, C.S., Rommens, J.M. and Beaudet, A.L. (1997) De novo truncating mutations in E6-AP ubiquitin-protein ligase gene (UBE3A) in Angelman syndrome. Nat. Genet. 15, 74-77.
30. Melaragno, J.E., Mehrotra, B. and Coleman, A.W. (1993) Relationship between endopolyploidy and cell size in epidermal tissue of Arabidopsis. Plant Cell, 5, 1661-1668.
31. Merkle, T. (2001) Nuclear import and export of proteins in plants: a tool for the regulation of signalling. Planta, 213, 499-517.
32. Mitsui, K., Nakanishi, M., Ohtsuka, S., Norwood, T.H., Okabayashi, K., Miyamoto, C., Tanaka, K., Yoshimura, A. and Ohtsubo, M. (1999) A novel human gene encoding HECT domain and RCC1-like repeats interacts with cyclins and is potentially regulated by the tumor suppressor proteins. Biochem. Biophys. Res. Commun. 266, 115-122.
33. Nawaz, Z., Lonard, D.M., Smith, C.L., Lev-Lehman, E., Tsai, S.Y., Tsai, M.J. and O'Malley, B.W. (1999) The Angelman syndrome-associated protein, E6-AP, is a coactivator for the nuclear hormone receptor superfamily. Mol. Cell Biol. 19, 1182-1189.
34. Olszewski, N., Sun, T. and Gubler, F. (2002) Gibberellin signaling: biosynthesis, catabolism, and response pathways. Plant Cell, 14, S61-S80.
35. Payne, C.T., Zhang, F. and Lloyd, A.M. (2000) GL3 encodes a bHLH protein that regulates trichome development in Arabidopsis through interaction with GL1 and TTG1. Genetics, 156, 1349-1362.
36. Perazza, D., Vachon, G. and Herzog, M. (1998) Gibberellins promote trichome formation by up-regulating GLABROUS1 in Arabidopsis. Plant Physiol. 117, 375-383.
37. Perazza, D., Herzog, M., Hulskamp, M., Brown, S., Dorne, A.M. and Bonneville, J.M. (1999) Trichome cell growth in Arabidopsis thaliana can be derepressed by mutations in at least five genes. Genetics, 152, 461-476.
38. Pickart, C.M. (2001) Mechanisms underlying ubiquitination. Annu. Rev. Biochem. 70, 503-533.
39. Scheffner, M., Nuber, U. and Huibregtse, J.M. (1995) Protein ubiquitination involving an E1-E2-E3 enzyme ubiquitin thioester cascade. Nature, 373, 81-83.
40. Schnittger, A., Weinl, C., Bouyer, D., Schobinger, U. and Hulskamp, M. (2003) Misexpression of the cyclin-dependent kinase inhibitor ICK1/KRP1 in single-celled Arabidopsis trichomes reduces endoreduplication and cell size and induces cell death. Plant Cell, 15, 303-315.
41. Schwarz, S.E., Rosa, J.L. and Scheffner, M. (1998) Characterization of human hect domain family members and their interaction with UbcH5 and UbcH7. J. Biol. Chem. 273, 12148-12154.
42. Sessions, A., Burke, E., Presting, G. et al. (2002) A high-throughput Arabidopsis reverse genetics system. Plant Cell, 14, 2985-2994.
43. Smalle, J., Kurepa, J., Yang, P., Emborg, T.J., Babiychuk, E., Kushnir, S. and Vierstra, R.D. (2003) The pleiotropic role of the 26S proteasome subunit RPN10 in Arabidopsis growth and development supports a substrate-specific function in abscisic acid signaling. Plant Cell, 15, 965-980.
44. Szurek, B., Marois, E., Bonas, U. and Van den Ackerveken, G. (2001) Eukaryotic features of the Xanthomonas type III effector AvrBs3: protein domains involved in transcriptional activation and the interaction with nuclear import receptors from pepper. Plant J. 26, 523-534.
45. Szymanski, D.B. (2000) The role of actin during Arabidopsis trichome morphogenesis. In Actin: a Dynamic Framework for Multiple Plant Cell Functions (Staiger, C.J., ed.). Dordrecht: Kluwer Academic Publishers, pp. 1-19.
46. Szymanski, D.B. and Marks, D.M. (1998) GLABROUS1 overexpression and TRIPTYCHON alters the cell cycle and trichome cell fate in Arabidopsis. Plant Cell, 10, 2047-2062.
47. Szymanski, D.B., Lloyd, A.M. and Marks, M.D. (2000) Progress in the molecular genetic analysis of trichome initiation and morphogenesis in Arabidopsis. Trends Plant Sci. 5, 214-219.
48. Tseng, T.S., Thornton, T.M., Gopalraj, M. and Olszewski, N.E. (2002) Ectopic expression of the tetratricopeptide repeat domain of SPINDLY causes defects in gibberellin response. Plant Physiol. 129, 605-615.
49. Verdecia, M.A., Joazeiro, C.A., Wells, N.J., Ferrer, J.L., Bowman, M.E., Hunter, T. and Noel, J.P. (2003) Conformational flexibility underlies ubiquitin ligation mediated by the WWP1 HECT domain E3 ligase. Mol. Cell, 11, 249-259.
50. Vierstra, R.D. (2003) The ubiquitin/26S proteasome pathway, the complex last chapter in the life of many plant proteins. Trends Plant Sci. 8, 135-142.
51. Wang, G., Yang, J. and Huibregtse, J.M. (1999) Functional domains of the Rsp5 ubiquitin-protein ligase. Mol. Cell Biol. 19, 342-352.
52. Xie, Y. and Varshavsky, A. (2002) UFD4 lacking the proteasome-binding region catalyses ubiquitination but is impaired in proteolysis. Nat. Cell Biol. 4, 1003-1007.
53. You, J. and Pickart, C.M. (2001) A HECT domain E3 enzyme assembles novel polyubiquitin chains. J. Biol. Chem. 276, 19871-19878.