The chromatin assembly factor subunit FASCIATA1 is involved in homologous recombination in plants

Plant Cell

Volumn 18, Issue 10, 2006, Pages 2431-2442

  Kirik, Angela ^a,c   Pecinka, Ales ^b,d   Wendeler, Edelgard ^a   Reiss, Bernd ^a  

^a MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH   (Germany)

^b LEIBNIZ INSTITUTE OF PLANT GENETICS AND CROP PLANT RESEARCH IPK   (Germany)

^c UNIVERSITY OF COLOGNE   (Germany)

^d GREGOR MENDEL INSTITUTE OF MOLECULAR PLANT BIOLOGY   (Austria)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; PLANTS (BOTANY); YEAST;

ARABIDOPSIS THALIANA; CHROMATIN ASSEMBLY; HETEROTRIMERIC COMPLEX; NUCLEOSOME REDISTRIBUTION;

PROTEINS;

NUCLEIC ACIDS; PLANTS; PROTEINS; YEASTS;

ARABIDOPSIS; ARABIDOPSIS THALIANA; EUKARYOTA; SACCHAROMYCES CEREVISIAE;

EID: 33751001765     PISSN: 10404651     EISSN: None     Source Type: Journal    
DOI: 10.1105/tpc.106.045088     Document Type: Article

References (59)

1. Abe, K., Osakabe, K., Nakayama, S., Endo, M., Tagiri, A., Todoriki, S., Ichikawa, H., and Toki, S. (2005). Arabidopsis RAD51C gene is important for homologous recombination in meiosis and mitosis. Plant Physiol. 139, 896-908.
2. Adkins, M.W., and Tyler, J.K. (2004). The histone chaperone Asf1p mediates global chromatin disassembly in vivo. J. Biol. Chem. 279, 52069-52074.
3. Alexeev, A., Mazin, A., and Kowalczykowski, S.C. (2003). Rad54 protein possesses chromatin-remodeling activity stimulated by the Rad51-ssDNA nucleoprotein filament. Nat. Struct. Biol. 10, 182-186.
4. Alexiadis, V., and Kadonaga, J.T. (2002). Strand pairing by Rad54 and Rad51 is enhanced by chromatin. Genes Dev. 16, 2767-2771.
5. Barow, M., and Meister, A. (2003). Endopolyploidy in seed plants is differently correlated to systematics, organ, life strategy and genome size. Plant Cell Environ. 26, 571-584.
6. Bechtold, N., Ellis, J., and Pelletier, G. (1993). In planta Agrobacterium-mediated gene transfer by infiltration of adult Arabidopsis thaliana plants. C. R. Acad. Sci. III, Sci. Vie 316, 1194-1199.
7. Dolan, L., Janmaat, K., Willemsen, V., Linstead, P., Poethig, S., Roberts, K., and Scheres, B. (1993). Cellular organization of the Arabidopsis thaliana root. Development 119, 71-84.
8. Doutriaux, M.P., Couteau, F., Bergounioux, C., and White, C. (1998). Isolation and characterization of the rad51 and dmc1 homologs from Arabidopsis thaliana. Mol. Gen. Genet. 257, 283-291.
9. Downs, J.A., Kosmidou, E., Morgan, A., and Jackson, S.P. (2003). Suppression of homologous recombination by the Saccharomyces cerevisiae linker histone. Mol. Cell 11, 1685-1692.
10. Fabri, C.O., and Schaffner, A.R. (1994). An Arabidopsis thaliana RFLP mapping set to localize mutations to chromosomal regions. Plant J. 5, 149-156.
11. Fransz, P., de Jong, J.H., Lysak, M., Castiglione, M.R., and Schubert, I. (2002). Interphase chromosomes in Arabidopsis are organized as well defined chromocenters from which euchromatin loops emanate. Proc. Natl. Acad. Sci. USA 99, 14584-14589.
12. Fritsch, O., Benvenuto, G., Bowler, C., Molinier, J., and Hohn, B. (2004). The INO80 protein controls homologous recombination in Arabidopsis thaliana. Mol. Cell 16, 479-485.
13. Gallego, M.E., Jeanneau, M., Granier, F., Bouchez, D., Bechtold, N., and White, C.I. (2001). Disruption of the Arabidopsis RAD50 gene leads to plant sterility and MMS sensitivity. Plant J. 25, 31-41.
14. Game, J.C., and Kaufman, P.D. (1999). Role of Saccharomyces cerevisiae chromatin assembly factor-1 in repair of ultraviolet radiation damage in vivo. Genetics 151, 485-497.
15. Green, C.M., and Almouzni, G. (2002). When repair meets chromatin-First in series on chromatin dynamics. EMBO Rep. 3, 28-33.
16. Hanin, M., Mengiste, T., Bogucki, A., and Paszkowski, J. (2000). Elevated levels of intrachromosomal homologous recombination in Arabidopsis overexpressing the MIM gene. Plant J. 24, 183-189.
17. Haushalter, K.A., and Kadonaga, J.T. (2003). Chromatin assembly by DNA-translocating motors. Nat. Rev. Mol. Cell Biol. 4, 613-620.
18. Hebbes, T., Clayton, A., Thorne, A., and Crane-Robinson, C. (1994). Core histone hyperacetylation co-maps with generalized DNase I sensitivity in the chicken beta-globin chromosomal comain. EMBO J. 13, 1823-1830.
19. Heitzeberg, F., Chen, I.P., Hartung, F., Orel, N., Angelis, K.J., and Puchta, H. (2004). The Rad17 homologue of Arabidopsis is involved in the regulation of DNA damage repair and homologous recombination. Plant J. 38, 954-968.
20. Hennig, L., Taranto, P., Waiser, M., Schonrock, N., and Gruissem, W. (2003). Arabidopsis MSI1 is required for epigenetic maintenance of reproductive development. Development 130, 2555-2565.
21. Hoek, M., and Stillman, B. (2003). Chromatin assembly factor 1 is essential and couples chromatin assembly to DNA replication in vivo. Proc. Natl. Acad. Sci. USA 100, 12183-12188.
22. Kaufman, P.D., Kobayashi, R., and Stillman, B. (1997). Ultraviolet radiation sensitivity and reduction of telomeric silencing in Saccharomyces cerevisiae cells lacking chromatin assembly factor-I. Genes Dev. 11, 345-357.
23. Kaya, H., Sato, S., Tabata, S., Kobayashi, Y., Iwabuchi, M., and Araki, T. (2000). Hosoba toge toge, a syndrome caused by a large chromosomal deletion associated with a T-DNA insertion in Arabidopsis. Plant Cell Physiol. 41, 1055-1066.
24. Kaya, H., Shibahara, K., Taoka, K., Iwabuchi, M., Stillman, B., and Araki, T. (2001). FASCIATA genes for chromatin assembly factor-1 in Arabidopsis maintain the cellular organization of apical meristems. Cell 104, 131-142.
25. Kolodner, R.D., Putnam, C.D., and Myung, K. (2002) Maintenance of genome stability in Saccharomyces cerevisiae. Science 297, 552-557.
26. Krude, T. (1999). Chromatin assembly during DNA replication in somatic cells. Eur. J. Biochem. 263, 1-5.
27. Larkins, B.A., Dilkes, B.P., Dante, R.A., Coelho, C.M., Woo, Y.M., and Liu, Y. (2001). Investigating the hows and whys of DNA endoreduplication. J. Exp. Bot. 52, 183-192.
28. Leyser, O., and Fumer, I.J. (1992). Characterisation of three shoot apical meristem mutants of Arabidopsis thaliana. Development 116, 397-403.
29. Li, W.X., Chen, C.B., Markmann-Mulisch, U., Timofejeva, L., Schmelzer, E., Ma, H., and Reiss, B. (2004). The Arabidopsis AtRAD51 gene is dispensable for vegetative development but required for meiosis. Proc. Natl. Acad. Sci. USA 101, 10596-10601.
30. Maluszynska, J., and Heslop-Harrison, J.S. (1991). Localization of tandemly repeated DNA sequences in Arabidopsis thaliana. Plant J. 1, 159-166.
31. Markmann-Mulisch, U., Hadi, M.Z., Koepchen, K., Alonso, J.C., Russo, V.E.A., Schell, J., and Reiss, B. (2002). The organization of Physcomitrella patens RAD51 genes is unique among eukaryotic organisms. Proc. Natl. Acad. Sci. USA 99, 2959-2964.
32. Markmann-Mulisch, U., Reiss, B., and Mulisch, M. (1999). Cell type-specific gene expression in the cell cycle of the dimorphic ciliate Eufolliculina uhligi. Mol. Gen. Genet. 262, 390-399.
33. Maser, R.S., and DePinho, R.A. (2002). Connecting chromosomes, crisis, and cancer. Science 297, 565-569.
34. Myung, K., and Kolodner, R.D. (2003). Induction of genome instability by DNA damage in Saccharomyces cerevisiae. DNA Repair (Amst.) 2, 243-258.
35. Myung, K., Pennaneach, V., Kats, E.S., and Kolodner, R.D. (2003). Saccharomyces cerevisiae chromatin-assembly factors that act during DNA replication function in the maintenance of genome stability. Proc. Natl. Acad. Sci. USA 100, 6640-6645.
36. Myung, K., Smith, S., and Kolodner, R.D. (2004). Mitotic checkpoint function in the formation of gross chromosomal rearrangements in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 101, 15980-15985.
37. Nabatiyan, A., and Krude, T. (2004). Silencing of chromatin assembly factor 1 in human cells leads to cell death and loss of chromatin assembly during DNA synthesis. Mol. Cell. Biol. 24, 2853-2862.
38. Ono, T., Kaya, H., Takeda, S., Abe, M., Ogawa, Y., Kato, M., Kakutani, T., Mittelsten Scheid, O.M., Araki, T., and Shibahara, K. (2006). Chromatin assembly factor 1 ensures the stable maintenance of silent chromatin states in Arabidopsis. Genes Cells 11, 153-162.
39. Pecinka, A., Schubert, V., Meister, A., Kreth, G., Klatte, M., Lysak, M.A., Fuchs, J., and Schubert, I. (2004). Chromosome territory arrangement and homologous pairing in nuclei of Arabidopsis thaliana are predominantly random except for NOR-bearing chromosomes. Chromosoma 113, 258-269.
40. Prado, F., and Aguilera, A. (2005). Partial depletion of histone h4 increases homologous recombination-mediated genetic instability. Mol. Cell. Biol. 25, 1526-1536.
41. Prado, F., Cortes-Ledesma, F., and Aguilera, A. (2004). The absence of the yeast chromatin assembly factor Asf1 increases genomic instability and sister chromatid exchange. EMBO Rep. 5, 497-502.
42. Puchta, H., Swoboda, P., Gal, S., Blot, M., and Hohn, B. (1995). Somatic intrachromosomal homologous recombination events in populations of plant siblings. Plant Mol. Biol. 28, 281-292.
43. Reiss, B. (2003). Homologous recombination and gene targeting in plant cells. Int. Rev. Cytol. 228, 85-139.
44. Reiss, B., Koncz, C., Moore, I., and Schell, J. (1994). A family of binary gene vectors with low inter-transformant variation. Life Sci. Adv. Plant Physiol. 13, 113-149.
45. Ridgway, P., and Almouzni, G. (2000). CAF-1 and the inheritance of chromatin states: At the crossroads of DNA replication and repair. J. Cell Sci. 113, 2647-2658.
46. Ridgway, P., and Almouzni, G. (2001). Chromatin assembly and organization. J. Cell Sci. 114, 2711-2712.
47. Ries, G., Heller, W., Puchta, H., Sandermann, H., Seidlitz, H.K., and Hohn, B. (2000). Elevated UV-B radiation reduces genome stability in plants. Nature 406, 98-101.
48. Schaffner, A.R. (1996). pARMS, multiple marker-containing plasmids for easy RFLP analysis in Arabidopsis thaliana. Plant Mol. Biol. Rep. 114, 11-16.
49. Schonrock, N., Exner, V., Probst, A., Gruissem, W., and Hennig, L. (2006). Functional genomic analysis of CAF-1 mutants in Arabidopsis thaliana. J. Biol. Chem. 281, 9560-9568.
50. Schuermann, D., Molinier, J., Fritsch, O., and Hohn, B. (2005). The dual nature of homologous recombination in plants. Trends Genet. 21, 172-181.
51. Soppe, W.J.J., Jasencakova, Z., Houben, A., Kakutani, T., Meister, A., Huang, M.S., Jacobsen, S.E., Schubert, I., and Fransz, P.F. (2002). DNA methylation controls histone H3 lysine 9 methylation and heterochromatin assembly in Arabidopsis. EMBO J. 21, 6549-6559.
52. Sugimoto-Shirasu, K., and Roberts, K. (2003). "Big it up": Endoreduplication and cell-size control in plants. Curr. Opin. Plant Biol. 6, 544-553.
53. Swoboda, P., Gal, S., Hohn, B., and Puchta, H. (1994). Intrachromosomal homologous recombination in whole plants. EMBO J. 13, 484-489.
54. Takeda, S., Tadele, Z., Hofmann, I., Probst, A.V., Angelis, K.J., Kaya, H., Araki, T., Mengiste, T., Mittelsten Scheid, O.M., Shibahara, K., Scheel, D., and Paszkowski, J. (2004). BRU1, a novel link between responses to DNA damage and epigenetic gene silencing in Arabidopsis. Genes Dev. 18, 782-793.
55. Tchenio, T., Casella, J.F., and Heidmann, T. (2001). A truncated form of the human CAF-1 p150 subunit impairs the maintenance of transcriptional gene silencing in mammalian cells. Mol. Cell. Biol. 21, 1953-1961.
56. van Attikum, H., Fritsch, O., Hohn, B., and Gasser, S.M. (2004). Recruitment of the INO80 complex by H2A phosphorylation links ATP-dependent chromatin remodeling with DNA double-strand break repair. Cell 119, 777-788.
57. van Blokland, R., ten Lohuis, M., and Meyer, P. (1997). Condensation of chromatin in transcriptional regions of an inactivated plant transgene: Evidence for an active role of transcription in gene silencing. Mol. Gen. Genet. 257, 1-13.
58. Vongs, A., Kakutani, T., Martienssen, R.A., and Richards, E.J. (1993). Arabidopsis thaliana DNA methylation mutants. Science 260, 1926-1928.
59. Ye, X.F., Franco, A.A., Santos, H., Nelson, D.M., Kaufman, P.D., and Adams, P.D. (2003). Defective S phase chromatin assembly causes DNA damage, activation of the S phase checkpoint, and S phase arrest. Mol. Cell 11, 341-351.