-
1
-
-
0036205618
-
Microheterogeneity in 16S rDNA-defined bacterial populations from a stratified planktonic environment is related to temporal succession and to ecological adaptations
-
Casamayor E.O., Pedrós-Alió C., Muyzer G., and Amann R. Microheterogeneity in 16S rDNA-defined bacterial populations from a stratified planktonic environment is related to temporal succession and to ecological adaptations. Appl. Environ. Microbiol. 68 (2002) 1706-1714
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 1706-1714
-
-
Casamayor, E.O.1
Pedrós-Alió, C.2
Muyzer, G.3
Amann, R.4
-
2
-
-
4344685409
-
Microbial population genomics and ecology: the road ahead
-
De Long E.F. Microbial population genomics and ecology: the road ahead. Environ. Microbiol. 6 (2004) 875-878
-
(2004)
Environ. Microbiol.
, vol.6
, pp. 875-878
-
-
De Long, E.F.1
-
3
-
-
0348196795
-
The future of microbial genomics
-
Nelson K.E. The future of microbial genomics. Environ. Microbiol. 5 (2003) 1223-1225
-
(2003)
Environ. Microbiol.
, vol.5
, pp. 1223-1225
-
-
Nelson, K.E.1
-
4
-
-
4644354371
-
Metagenomics-the key to the uncultured microbes
-
Streit W.R., and Schmitz R.A. Metagenomics-the key to the uncultured microbes. Curr. Opin. Microbiol. 7 (2004) 492-498
-
(2004)
Curr. Opin. Microbiol.
, vol.7
, pp. 492-498
-
-
Streit, W.R.1
Schmitz, R.A.2
-
5
-
-
0013596021
-
The guanine and cytosine content of genomic DNA and bacterial evolution
-
Muto A., and Osawa S. The guanine and cytosine content of genomic DNA and bacterial evolution. Proc. Natl. Acad. Sci. 84 (1987) 166-169
-
(1987)
Proc. Natl. Acad. Sci.
, vol.84
, pp. 166-169
-
-
Muto, A.1
Osawa, S.2
-
6
-
-
0035819839
-
High guanine-cytosine content is not an adaptation to high temperature: a comparative analysis amongst prokaryotes
-
Hurst L.D., and Merchant A.R. High guanine-cytosine content is not an adaptation to high temperature: a comparative analysis amongst prokaryotes. Proc. R. Soc. Lond., B Biol. Sci. 268 (2000) 493-497
-
(2000)
Proc. R. Soc. Lond., B Biol. Sci.
, vol.268
, pp. 493-497
-
-
Hurst, L.D.1
Merchant, A.R.2
-
7
-
-
7644238105
-
Correlations between genomic GC levels and optimal growth temperatures are not 'robust'
-
Marashi S.A., and Ghalanbor Z. Correlations between genomic GC levels and optimal growth temperatures are not 'robust'. Biochem. Biophys. Res. Commun. 325 (2004) 381-383
-
(2004)
Biochem. Biophys. Res. Commun.
, vol.325
, pp. 381-383
-
-
Marashi, S.A.1
Ghalanbor, Z.2
-
8
-
-
28544451203
-
Environments shape the nucleotide composition of genomes
-
Foerstner K.U., Mering C.V., Hooper S.D., and Bork P. Environments shape the nucleotide composition of genomes. EMBO Rep. 6 (2005) 1208-1213
-
(2005)
EMBO Rep.
, vol.6
, pp. 1208-1213
-
-
Foerstner, K.U.1
Mering, C.V.2
Hooper, S.D.3
Bork, P.4
-
9
-
-
33745759756
-
Genomic GC level, optimal growth temperature, and genome size in prokaryotes
-
Musto H., Naya H., Zavala A., Romero H., Alvarez-Valín F., and Bernardi G. Genomic GC level, optimal growth temperature, and genome size in prokaryotes. Biochem. Biophys. Res. Commun. 347 (2006) 1-3
-
(2006)
Biochem. Biophys. Res. Commun.
, vol.347
, pp. 1-3
-
-
Musto, H.1
Naya, H.2
Zavala, A.3
Romero, H.4
Alvarez-Valín, F.5
Bernardi, G.6
-
11
-
-
0036087165
-
Comparative Genometrics (CG): a database dedicated to biometric comparisons of whole genomes
-
Roten C.A.H., Gamba P., Barblan J.L., and Karamata D. Comparative Genometrics (CG): a database dedicated to biometric comparisons of whole genomes. Nucleic Acids Res. 30 (2002) 142-144
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 142-144
-
-
Roten, C.A.H.1
Gamba, P.2
Barblan, J.L.3
Karamata, D.4
-
13
-
-
0026585152
-
Long-range correlations in nucleotide sequences
-
Peng C.K., Buldyrev S.V., Goldberger A.L., Havlin S., Sciortino F., Simons M., and Stanley H.E. Long-range correlations in nucleotide sequences. Nature 356 (1992) 168-170
-
(1992)
Nature
, vol.356
, pp. 168-170
-
-
Peng, C.K.1
Buldyrev, S.V.2
Goldberger, A.L.3
Havlin, S.4
Sciortino, F.5
Simons, M.6
Stanley, H.E.7
-
14
-
-
0029418025
-
Statistical properties of DNA sequences
-
Peng C.K., Buldyrev S.V., Goldberger A.L., Havlin S., Mantegna R.N., Simons M., and Stanley H.E. Statistical properties of DNA sequences. Physica, A 221 (1995) 180-192
-
(1995)
Physica, A
, vol.221
, pp. 180-192
-
-
Peng, C.K.1
Buldyrev, S.V.2
Goldberger, A.L.3
Havlin, S.4
Mantegna, R.N.5
Simons, M.6
Stanley, H.E.7
-
16
-
-
19744379248
-
Scale invariant features of coding and noncoding DNA sequences
-
Iannaconne P., and Khokha M.K. (Eds), CRC Press, Boca Raton, FL
-
Stanley H.E., Buldyrev S.V., Goldberger A.L., Havlin S., Mantegna R.N., Peng C.K., and Simons M. Scale invariant features of coding and noncoding DNA sequences. In: Iannaconne P., and Khokha M.K. (Eds). Fractal Geometry in Biological Systems: an Analytical Approach (1996), CRC Press, Boca Raton, FL 15-30
-
(1996)
Fractal Geometry in Biological Systems: an Analytical Approach
, pp. 15-30
-
-
Stanley, H.E.1
Buldyrev, S.V.2
Goldberger, A.L.3
Havlin, S.4
Mantegna, R.N.5
Peng, C.K.6
Simons, M.7
-
17
-
-
0025318481
-
Genetic linkage and complex disease: a comment
-
Elston R.C., and Wilson A.F. Genetic linkage and complex disease: a comment. Genet. Epidemiol. 7 (1990) 17-19
-
(1990)
Genet. Epidemiol.
, vol.7
, pp. 17-19
-
-
Elston, R.C.1
Wilson, A.F.2
-
18
-
-
0001045050
-
Genomic landscapes
-
Lobry J.R. Genomic landscapes. Microbiol. Today 26 (1999) 164-165
-
(1999)
Microbiol. Today
, vol.26
, pp. 164-165
-
-
Lobry, J.R.1
-
19
-
-
84956088098
-
α spectrum in a non-coding DNA sequence
-
α spectrum in a non-coding DNA sequence. Europhys. Lett. 17 (1992) 655-660
-
(1992)
Europhys. Lett.
, vol.17
, pp. 655-660
-
-
Li, W.1
Kaneko, K.2
-
20
-
-
0000428193
-
Global fractal dimension of human DNA sequences treated as pseudorandom walks
-
Berthelsen C.L., Glazier J.A., and Skolnick M.H. Global fractal dimension of human DNA sequences treated as pseudorandom walks. Phys. Rev., A 45 (1992) 8902-8913
-
(1992)
Phys. Rev., A
, vol.45
, pp. 8902-8913
-
-
Berthelsen, C.L.1
Glazier, J.A.2
Skolnick, M.H.3
-
21
-
-
0033232146
-
Statistics of DNA sequences: a low-frequency analysis
-
Vieira M.S. Statistics of DNA sequences: a low-frequency analysis. Phys. Rev., E 60 (1999) 5932-5937
-
(1999)
Phys. Rev., E
, vol.60
, pp. 5932-5937
-
-
Vieira, M.S.1
-
22
-
-
41349100413
-
Recognition of an organism from fragments of its complete genome
-
Anh V.V., Lau K.S., and Yu Z.G. Recognition of an organism from fragments of its complete genome. Phys. Rev., E 66 (2002) 031910
-
(2002)
Phys. Rev., E
, vol.66
, pp. 031910
-
-
Anh, V.V.1
Lau, K.S.2
Yu, Z.G.3
-
23
-
-
0142091486
-
The genomic tree of living organisms based on a fractal model
-
Yu Z.G., Anh V., Lau K.S., and Chu K.H. The genomic tree of living organisms based on a fractal model. Phys. Lett., A 317 (2003) 293-302
-
(2003)
Phys. Lett., A
, vol.317
, pp. 293-302
-
-
Yu, Z.G.1
Anh, V.2
Lau, K.S.3
Chu, K.H.4
-
24
-
-
34547856203
-
Mosaic organization of DNA nucleotides
-
Peng C.K., Buldyrev S.V., Havlin S., Simons M., Stanley H.E., and Goldberger A.L. Mosaic organization of DNA nucleotides. Phys. Rev., E 49 (1994) 1685-1689
-
(1994)
Phys. Rev., E
, vol.49
, pp. 1685-1689
-
-
Peng, C.K.1
Buldyrev, S.V.2
Havlin, S.3
Simons, M.4
Stanley, H.E.5
Goldberger, A.L.6
-
25
-
-
33748690289
-
Long-range correlation properties of coding and noncoding DNA sequences: GenBank analysis
-
Buldyrev S.V., Goldberger A.L., Havlin S., Mantegna R.N., Matsa M.E., Peng C.K., Simons M., and Stanley H.E. Long-range correlation properties of coding and noncoding DNA sequences: GenBank analysis. Phys. Rev., E 51 (1995) 5084-5091
-
(1995)
Phys. Rev., E
, vol.51
, pp. 5084-5091
-
-
Buldyrev, S.V.1
Goldberger, A.L.2
Havlin, S.3
Mantegna, R.N.4
Matsa, M.E.5
Peng, C.K.6
Simons, M.7
Stanley, H.E.8
-
26
-
-
0000204878
-
α noise in DNA base sequences
-
α noise in DNA base sequences. Phys. Rev. Lett. 68 (1992) 3805-3808
-
(1992)
Phys. Rev. Lett.
, vol.68
, pp. 3805-3808
-
-
Voss, R.F.1
-
27
-
-
84956136196
-
Crumpled gobule model of the three-dimensional structure of DNA
-
Grosberg A., Rabin Y., Havlin S., and Neer A. Crumpled gobule model of the three-dimensional structure of DNA. Europhys. Lett. 23 (1993) 373-378
-
(1993)
Europhys. Lett.
, vol.23
, pp. 373-378
-
-
Grosberg, A.1
Rabin, Y.2
Havlin, S.3
Neer, A.4
-
28
-
-
0034962206
-
Evolution of the periodicity and the self-similarity in DNA sequence: a Fourier transform analysis
-
Nagai N., Kuwata K., Hayashi T., Kuwata H., and Era S. Evolution of the periodicity and the self-similarity in DNA sequence: a Fourier transform analysis. Jpn. J. Physiol. 51 (2001) 159-168
-
(2001)
Jpn. J. Physiol.
, vol.51
, pp. 159-168
-
-
Nagai, N.1
Kuwata, K.2
Hayashi, T.3
Kuwata, H.4
Era, S.5
-
30
-
-
0031801256
-
Molecular characterization of the principal symbiotic bacteria of the weevil Sitophilus oryzae: a peculiar G+C content of an endocytobiotic DNA
-
Heddi A., Charles H., Khatchadourian C., Bonnot G., and Nardon P. Molecular characterization of the principal symbiotic bacteria of the weevil Sitophilus oryzae: a peculiar G+C content of an endocytobiotic DNA. J. Mol. Evol. 47 (1998) 52-61
-
(1998)
J. Mol. Evol.
, vol.47
, pp. 52-61
-
-
Heddi, A.1
Charles, H.2
Khatchadourian, C.3
Bonnot, G.4
Nardon, P.5
-
31
-
-
0037040394
-
Microbial minimalism: genome reduction in bacterial pathogens
-
Moran N.A. Microbial minimalism: genome reduction in bacterial pathogens. Cell 108 (2002) 583-586
-
(2002)
Cell
, vol.108
, pp. 583-586
-
-
Moran, N.A.1
-
32
-
-
0036606915
-
Base composition bias might result from competition for metabolic resources
-
Rocha E.P., and Danchin A. Base composition bias might result from competition for metabolic resources. Trends Genet. 18 (2002) 291-294
-
(2002)
Trends Genet.
, vol.18
, pp. 291-294
-
-
Rocha, E.P.1
Danchin, A.2
-
33
-
-
0032524384
-
Analyzing genomes with cumulative skew diagrams
-
Grigoriev A. Analyzing genomes with cumulative skew diagrams. Nucleic Acids Res. 26 (1998) 2286-2290
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 2286-2290
-
-
Grigoriev, A.1
-
34
-
-
0036709941
-
Is there a role for replication fork asymmetry in the distribution of genes in bacterial genomes?
-
Rocha E.P.C. Is there a role for replication fork asymmetry in the distribution of genes in bacterial genomes?. Trends Microbiol. 10 (2000) 393-395
-
(2000)
Trends Microbiol.
, vol.10
, pp. 393-395
-
-
Rocha, E.P.C.1
-
35
-
-
33644853927
-
Origin of replication in circular prokaryotic chromosomes
-
Worning P., Jensen L.J., Hallin P.F., Stærfeldt H.H., and Ussery D.W. Origin of replication in circular prokaryotic chromosomes. Environ. Microbiol. 8 (2006) 353-361
-
(2006)
Environ. Microbiol.
, vol.8
, pp. 353-361
-
-
Worning, P.1
Jensen, L.J.2
Hallin, P.F.3
Stærfeldt, H.H.4
Ussery, D.W.5
-
36
-
-
43949156767
-
Understanding long-range correlations in DNA-sequences
-
Li W., Marr T., and Kaneko K. Understanding long-range correlations in DNA-sequences. Physica, D 75 (1994) 392-416
-
(1994)
Physica, D
, vol.75
, pp. 392-416
-
-
Li, W.1
Marr, T.2
Kaneko, K.3
-
37
-
-
0036949929
-
Replication associated mutational pressure generating long-range correlation in DNA
-
Mackiewicz P., Kowalczuk M., Mackiewicz D., Nowicka A., Dudkiewicz M., Laszkiewicz A., Dudek M., and Cebrat S. Replication associated mutational pressure generating long-range correlation in DNA. Physica, A 314 (2002) 646-654
-
(2002)
Physica, A
, vol.314
, pp. 646-654
-
-
Mackiewicz, P.1
Kowalczuk, M.2
Mackiewicz, D.3
Nowicka, A.4
Dudkiewicz, M.5
Laszkiewicz, A.6
Dudek, M.7
Cebrat, S.8
-
38
-
-
0032584101
-
Strand compositional asymmetry in bacterial and large viral genomes
-
Mrázek J., and Karlin S. Strand compositional asymmetry in bacterial and large viral genomes. Proc. Natl. Acad. Sci. 95 (1997) 3720-3725
-
(1997)
Proc. Natl. Acad. Sci.
, vol.95
, pp. 3720-3725
-
-
Mrázek, J.1
Karlin, S.2
-
39
-
-
4444364227
-
Multiple origins of replication in archaea
-
Kelman L.M., and Kelman Z. Multiple origins of replication in archaea. Trends Microbiol. 12 (2004) 399-401
-
(2004)
Trends Microbiol.
, vol.12
, pp. 399-401
-
-
Kelman, L.M.1
Kelman, Z.2
-
40
-
-
0027278557
-
Instability and decay of the primary structure of DNA
-
Lindahl T. Instability and decay of the primary structure of DNA. Nature 362 (1993) 709-715
-
(1993)
Nature
, vol.362
, pp. 709-715
-
-
Lindahl, T.1
-
41
-
-
0030985997
-
Rates of spontaneous mutation in an archaeon from geothermal environments
-
Jacobs K.L., and Grogan D.W. Rates of spontaneous mutation in an archaeon from geothermal environments. J. Bacteriol. 197 (1997) 3298-3303
-
(1997)
J. Bacteriol.
, vol.197
, pp. 3298-3303
-
-
Jacobs, K.L.1
Grogan, D.W.2
-
42
-
-
0037315735
-
Evolutionary implications of microbial genome tetranucleotide frequency biases
-
Pride D.T., Meinersmann R.J., Wassenaar T.M., and Blaser M.J. Evolutionary implications of microbial genome tetranucleotide frequency biases. Genome Res. 13 (2003) 145-158
-
(2003)
Genome Res.
, vol.13
, pp. 145-158
-
-
Pride, D.T.1
Meinersmann, R.J.2
Wassenaar, T.M.3
Blaser, M.J.4
-
43
-
-
4344670204
-
Application of tetranucleotide frequencies for the assignment of genomic fragments
-
Teeling H., Meyerdierks A., Bauer M., Amann R., and Glockner F.O. Application of tetranucleotide frequencies for the assignment of genomic fragments. Environ. Microbiol. 6 (2004) 938-947
-
(2004)
Environ. Microbiol.
, vol.6
, pp. 938-947
-
-
Teeling, H.1
Meyerdierks, A.2
Bauer, M.3
Amann, R.4
Glockner, F.O.5
-
44
-
-
33845957530
-
Accurate phylogenetic classification of variable-length DNA fragments
-
McHardy A.C., Martin H.G., Tsirigos A., Hugenholtz P., and Rigoutsos I. Accurate phylogenetic classification of variable-length DNA fragments. Nat. Methods 4 (2007) 63-72
-
(2007)
Nat. Methods
, vol.4
, pp. 63-72
-
-
McHardy, A.C.1
Martin, H.G.2
Tsirigos, A.3
Hugenholtz, P.4
Rigoutsos, I.5
-
45
-
-
4344666232
-
Correlations between genomic GC levels and optimal growth temperatures in prokaryotes
-
Musto H., Naya H., Zavala A., Romero H., Alvarez-Valín F., and Bernardi G. Correlations between genomic GC levels and optimal growth temperatures in prokaryotes. FEBS Lett. 573 (2004) 73-77
-
(2004)
FEBS Lett.
, vol.573
, pp. 73-77
-
-
Musto, H.1
Naya, H.2
Zavala, A.3
Romero, H.4
Alvarez-Valín, F.5
Bernardi, G.6
-
46
-
-
0030900384
-
Relationships between genomic G+C content, RNA secondary structures, and optimal growth temperature in prokaryotes
-
Galtier N., and Lobry J.R. Relationships between genomic G+C content, RNA secondary structures, and optimal growth temperature in prokaryotes. J. Mol. Evol. 44 (1997) 632-636
-
(1997)
J. Mol. Evol.
, vol.44
, pp. 632-636
-
-
Galtier, N.1
Lobry, J.R.2
-
47
-
-
33644622447
-
On the correlation between genomic G+C content and optimal growth temperature in prokaryotes: data quality and confounding factors
-
Wang H.C., Susko E., and Roger A.J. On the correlation between genomic G+C content and optimal growth temperature in prokaryotes: data quality and confounding factors. Biochem. Biophys. Res. Commun. 342 (2006) 681-684
-
(2006)
Biochem. Biophys. Res. Commun.
, vol.342
, pp. 681-684
-
-
Wang, H.C.1
Susko, E.2
Roger, A.J.3
-
48
-
-
0029805251
-
A simple vectorial representation of DNA sequences for the detection of replication origins in bacteria
-
Lobry J.R. A simple vectorial representation of DNA sequences for the detection of replication origins in bacteria. Biochimie 78 (1996) 323-326
-
(1996)
Biochimie
, vol.78
, pp. 323-326
-
-
Lobry, J.R.1
-
50
-
-
0035395850
-
Effect of trends on detrended fluctuation analysis
-
Hu K., Ivanov P.C., Chen Z., Carpena P., and Stanley H.E. Effect of trends on detrended fluctuation analysis. Phys. Rev., E 64 (2001) 011114
-
(2001)
Phys. Rev., E
, vol.64
, pp. 011114
-
-
Hu, K.1
Ivanov, P.C.2
Chen, Z.3
Carpena, P.4
Stanley, H.E.5
-
51
-
-
0000501589
-
Fractional Brownian motions, fractional noises and applications
-
Mandelbrot B.B., and Van Ness J.W. Fractional Brownian motions, fractional noises and applications. SIAM Rev. 10 (1968) 422-437
-
(1968)
SIAM Rev.
, vol.10
, pp. 422-437
-
-
Mandelbrot, B.B.1
Van Ness, J.W.2
|