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Volumn 8, Issue 10, 2008, Pages 2052-2061

A systematic approach to identify STRE-binding proteins of the gsn glycogen synthase gene promoter in Neurospora crassa

Author keywords

EMSA; gsn promoter; Heat shock; Neurospora crassa; STRE

Indexed keywords

BINDING PROTEIN; DNA; DNA FRAGMENT; GLYCOGEN SYNTHASE;

EID: 44649123650     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.200700921     Document Type: Article
Times cited : (10)

References (40)
  • 1
    • 0037464589 scopus 로고    scopus 로고
    • The genome sequence of the filamentous fungus Neurospora crassa
    • Galagan, J. E., Calvo, S. E., Borkovich, K. A., Selker, E. U. et al., The genome sequence of the filamentous fungus Neurospora crassa. Nature 2003, 422, 859-868.
    • (2003) Nature , vol.422 , pp. 859-868
    • Galagan, J.E.1    Calvo, S.E.2    Borkovich, K.A.3    Selker, E.U.4
  • 2
    • 12144287318 scopus 로고    scopus 로고
    • Lessons from the genome sequence of Neurospora crassa: Tracing the path from genomic blueprint to multicellular organism
    • Borkovich, K. A., Alex, L. A., Yarden, O., Freitag, M. et al., Lessons from the genome sequence of Neurospora crassa: Tracing the path from genomic blueprint to multicellular organism. Microbiol. Mol. Boil. Rev. 2004, 68, 1-108.
    • (2004) Microbiol. Mol. Boil. Rev , vol.68 , pp. 1-108
    • Borkovich, K.A.1    Alex, L.A.2    Yarden, O.3    Freitag, M.4
  • 3
    • 28844492079 scopus 로고    scopus 로고
    • Genomics of the fungal kingdom: Insights into eukaryotic biology
    • Galagan, J. E., Henn, M. R., Ma, L.-J., Cuomo, C. A., Birren, B., Genomics of the fungal kingdom: Insights into eukaryotic biology. Genome Res. 2005, 15, 1620-1631.
    • (2005) Genome Res , vol.15 , pp. 1620-1631
    • Galagan, J.E.1    Henn, M.R.2    Ma, L.-J.3    Cuomo, C.A.4    Birren, B.5
  • 4
    • 0015245093 scopus 로고
    • Glucose-6-phosphate dependent and independent forms of yeast glycogen synthetase. Their properties and interconversions
    • Rothman-Denes, L. B., Cabib, E., Glucose-6-phosphate dependent and independent forms of yeast glycogen synthetase. Their properties and interconversions. Biochemistry 1971, 10, 1236-1242.
    • (1971) Biochemistry , vol.10 , pp. 1236-1242
    • Rothman-Denes, L.B.1    Cabib, E.2
  • 5
    • 0019187844 scopus 로고
    • Reserve carbohydrate metabolism in Saccharomyces cerevisiae: Responses to nutrient limitation
    • Lillie, S. H., Pringle, J. R., Reserve carbohydrate metabolism in Saccharomyces cerevisiae: Responses to nutrient limitation. J. Bacteriol. 1980, 143, 1384-1394.
    • (1980) J. Bacteriol , vol.143 , pp. 1384-1394
    • Lillie, S.H.1    Pringle, J.R.2
  • 6
    • 0030878249 scopus 로고    scopus 로고
    • Effects of various types of stress on the metabolism of reserve carbohydrates in Saccharomyces cerevisiae: Genetic evidence for a stress-induced recycling of glycogen and trehalose
    • Parrou, J. L., Teste, M. A., François, J., Effects of various types of stress on the metabolism of reserve carbohydrates in Saccharomyces cerevisiae: Genetic evidence for a stress-induced recycling of glycogen and trehalose. Microbiology 1997, 143, 1891-1900.
    • (1997) Microbiology , vol.143 , pp. 1891-1900
    • Parrou, J.L.1    Teste, M.A.2    François, J.3
  • 7
    • 0029083543 scopus 로고
    • Response of a yeast glycogen synthase gene to stress
    • Ni, H. T., LaPorte, D. C., Response of a yeast glycogen synthase gene to stress. Mol. Microbiol. 1995, 16, 1197-1205.
    • (1995) Mol. Microbiol , vol.16 , pp. 1197-1205
    • Ni, H.T.1    LaPorte, D.C.2
  • 8
    • 0032964932 scopus 로고    scopus 로고
    • Dynamic responses of reserve carbohydrate metabolism under carbon and nitrogen limitations in Saccharomyces cerevisiae
    • Parrou, J. L., Enjalbert, B., Plourde, L., Bauche, A. et al., Dynamic responses of reserve carbohydrate metabolism under carbon and nitrogen limitations in Saccharomyces cerevisiae. Yeast 1999, 15, 191-203.
    • (1999) Yeast , vol.15 , pp. 191-203
    • Parrou, J.L.1    Enjalbert, B.2    Plourde, L.3    Bauche, A.4
  • 9
    • 4043060951 scopus 로고    scopus 로고
    • Combinatorial control by the protein kinases PKA, PH085 and SNF1 of transcriptional induction of the Saccharomyces cerevisiae GSY2 gene at the diauxic shift
    • Enjalbert, B., Parrou, J. L., Teste, M. A., François, J., Combinatorial control by the protein kinases PKA, PH085 and SNF1 of transcriptional induction of the Saccharomyces cerevisiae GSY2 gene at the diauxic shift. Mol. Genet. Genomics 2004, 271, 607-708.
    • (2004) Mol. Genet. Genomics , vol.271 , pp. 607-708
    • Enjalbert, B.1    Parrou, J.L.2    Teste, M.A.3    François, J.4
  • 10
    • 0029879360 scopus 로고    scopus 로고
    • The Saccharomyces cerevisiae zinc finger proteins Msn2p and Msn4p are required for transcriptional induction through the stress response element (STRE)
    • Martinez-Pastor, M., Marchler, G., Schuller, C., Marchler, B. A. et al., The Saccharomyces cerevisiae zinc finger proteins Msn2p and Msn4p are required for transcriptional induction through the stress response element (STRE). EMBO J. 1996, 15, 2227-2235.
    • (1996) EMBO J , vol.15 , pp. 2227-2235
    • Martinez-Pastor, M.1    Marchler, G.2    Schuller, C.3    Marchler, B.A.4
  • 11
    • 0038612842 scopus 로고    scopus 로고
    • Oscillatory nucleocytoplasmic shuttling of the general stress response transcriptional activators Msn2 and Msn4 in Saccharomyces cerevisiae
    • Jacquet, M., Renault, G., Lallet, S., De Mey, S., Goldbeter, A., Oscillatory nucleocytoplasmic shuttling of the general stress response transcriptional activators Msn2 and Msn4 in Saccharomyces cerevisiae. J. Cell. Biol. 2003, 161, 497-505.
    • (2003) J. Cell. Biol , vol.161 , pp. 497-505
    • Jacquet, M.1    Renault, G.2    Lallet, S.3    De Mey, S.4    Goldbeter, A.5
  • 12
    • 0037243093 scopus 로고    scopus 로고
    • Yeast glycogen synthase kinase-3 activates Msn2p-dependent transcription of stress responsive genes
    • Hirata, Y., Andoh, T., Asahara, T., Kikuchi, A., Yeast glycogen synthase kinase-3 activates Msn2p-dependent transcription of stress responsive genes. Mol. Biol. Cell 2003, 14, 302-312.
    • (2003) Mol. Biol. Cell , vol.14 , pp. 302-312
    • Hirata, Y.1    Andoh, T.2    Asahara, T.3    Kikuchi, A.4
  • 14
    • 0036241648 scopus 로고    scopus 로고
    • Cloning and molecular characterization of the gsn cDNA encoding glycogen synthase in Neurospora crassa
    • de Paula, R., de Pinho, C. A., Terenzi, H. F., Bertolini, M. C., Cloning and molecular characterization of the gsn cDNA encoding glycogen synthase in Neurospora crassa. Mol. Genet. Genomics 2002, 267, 241-253.
    • (2002) Mol. Genet. Genomics , vol.267 , pp. 241-253
    • de Paula, R.1    de Pinho, C.A.2    Terenzi, H.F.3    Bertolini, M.C.4
  • 15
    • 13244277687 scopus 로고    scopus 로고
    • Genomic organization of the Neurospora crassa gsn gene. Possible involvement of the STRE and HSE elements in the modulation of gene transcription during heat shock
    • Freitas, F. Z., Bertolini, M. C., Genomic organization of the Neurospora crassa gsn gene. Possible involvement of the STRE and HSE elements in the modulation of gene transcription during heat shock. Mol. Genet. Genomics 2004, 272, 550-561.
    • (2004) Mol. Genet. Genomics , vol.272 , pp. 550-561
    • Freitas, F.Z.1    Bertolini, M.C.2
  • 16
    • 0001963674 scopus 로고
    • A convenient growth medium for Neurospora crassa (medium N)
    • Vogel, H. J., A convenient growth medium for Neurospora crassa (medium N). Microbiol. Genet. Bull. 1956, 13, 42-43.
    • (1956) Microbiol. Genet. Bull , vol.13 , pp. 42-43
    • Vogel, H.J.1
  • 17
    • 0015384891 scopus 로고
    • Determination of protein: A modification of the Lowry method that gives a linear photometric response
    • Hartree, E. F., Determination of protein: A modification of the Lowry method that gives a linear photometric response. Anal. Biochem. 1972, 48, 422-427.
    • (1972) Anal. Biochem , vol.48 , pp. 422-427
    • Hartree, E.F.1
  • 18
    • 0014949207 scopus 로고
    • Cleavage of structural proteins during the assembly of the head of bacteriophage T4
    • Laemmli, U. K., Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 1970, 227, 680-685.
    • (1970) Nature , vol.227 , pp. 680-685
    • Laemmli, U.K.1
  • 19
    • 0036615612 scopus 로고    scopus 로고
    • A proteomics approach for the identification of DNA binding activities observed in the electrophoretic mobility shift assay
    • Woo, A. J., Dods, J. S., Susanto, E., Ulgiati, D., Abraham, L. J., A proteomics approach for the identification of DNA binding activities observed in the electrophoretic mobility shift assay. Mol. Cell. Proteomics 2002, 1, 472-478.
    • (2002) Mol. Cell. Proteomics , vol.1 , pp. 472-478
    • Woo, A.J.1    Dods, J.S.2    Susanto, E.3    Ulgiati, D.4    Abraham, L.J.5
  • 20
    • 0033813390 scopus 로고    scopus 로고
    • Stress-controlled transcription factors, stress-induced genes and stress tolerance in budding yeast
    • Estruch, F., Stress-controlled transcription factors, stress-induced genes and stress tolerance in budding yeast. FEMS Microbiol. Rev. 2000, 24, 469-486.
    • (2000) FEMS Microbiol. Rev , vol.24 , pp. 469-486
    • Estruch, F.1
  • 21
    • 0033982031 scopus 로고    scopus 로고
    • Very low amounts of glucose cause repression of the stress-responsive gene HSP12 in Saccharomyces cerevisiae
    • de Groot, E., Bebelman, J. P., Mager, W. H., Planta, R. J., Very low amounts of glucose cause repression of the stress-responsive gene HSP12 in Saccharomyces cerevisiae. Microbiology 2000, 146, 367-375.
    • (2000) Microbiology , vol.146 , pp. 367-375
    • de Groot, E.1    Bebelman, J.P.2    Mager, W.H.3    Planta, R.J.4
  • 22
    • 27744587276 scopus 로고    scopus 로고
    • Repressors Nrg1 and Nrg2 regulate a set of stress-responsive genes in Saccharomyces cerevisiae
    • Vyas, V. K., Berkey, C. D., Miyao, T., Carlson, M., Repressors Nrg1 and Nrg2 regulate a set of stress-responsive genes in Saccharomyces cerevisiae. Eukaryot. Cell 2005, 4, 1882-1891.
    • (2005) Eukaryot. Cell , vol.4 , pp. 1882-1891
    • Vyas, V.K.1    Berkey, C.D.2    Miyao, T.3    Carlson, M.4
  • 23
    • 0344496513 scopus 로고    scopus 로고
    • The tetratricopeptide repeat: A structural motif mediating protein-protein interactions
    • Blatch, G. L., Lassie, M., The tetratricopeptide repeat: A structural motif mediating protein-protein interactions. Bioessays 1999, 21, 932-939.
    • (1999) Bioessays , vol.21 , pp. 932-939
    • Blatch, G.L.1    Lassie, M.2
  • 24
    • 33845959149 scopus 로고    scopus 로고
    • Sgt1p is a unique co-chaperone that acts as a client adaptor to link Hsp90 to Skp1p
    • Catlett, M. G., Kaplan, K. B., Sgt1p is a unique co-chaperone that acts as a client adaptor to link Hsp90 to Skp1p. J. Biol. Chem. 2006, 281, 33739-33748.
    • (2006) J. Biol. Chem , vol.281 , pp. 33739-33748
    • Catlett, M.G.1    Kaplan, K.B.2
  • 25
    • 0028969881 scopus 로고
    • Distinct TPR motifs of Cyc8 are involved in recruiting the Cyc8-Tup1 corepressor complex to differentially regulated promoters
    • Tzamarias, D., Struhl, K., Distinct TPR motifs of Cyc8 are involved in recruiting the Cyc8-Tup1 corepressor complex to differentially regulated promoters. Genes Dev. 1995, 9, 821-831.
    • (1995) Genes Dev , vol.9 , pp. 821-831
    • Tzamarias, D.1    Struhl, K.2
  • 26
    • 4344590764 scopus 로고    scopus 로고
    • The J-protein family: Modulating protein assembly, disassembly and translocation
    • Walsh, P., Bursac, D., Law, Y. C., Cyr, D., Lithgow, T., The J-protein family: Modulating protein assembly, disassembly and translocation. EMBO Reports 2004, 5, 567-571.
    • (2004) EMBO Reports , vol.5 , pp. 567-571
    • Walsh, P.1    Bursac, D.2    Law, Y.C.3    Cyr, D.4    Lithgow, T.5
  • 27
    • 0032103439 scopus 로고    scopus 로고
    • The J-domain family and the recruitment of chaperone power
    • Kelley, W. L., The J-domain family and the recruitment of chaperone power. Trends Biochem. Sci 1998, 23, 222-227.
    • (1998) Trends Biochem. Sci , vol.23 , pp. 222-227
    • Kelley, W.L.1
  • 28
    • 0032031725 scopus 로고    scopus 로고
    • Molecular chaperones as HSF-specific transcriptional repressors
    • Shi, Y., Mosser, D., Morimoto, R., Molecular chaperones as HSF-specific transcriptional repressors. Genes Dev. 1998, 12, 654-666.
    • (1998) Genes Dev , vol.12 , pp. 654-666
    • Shi, Y.1    Mosser, D.2    Morimoto, R.3
  • 29
    • 0042815093 scopus 로고    scopus 로고
    • Brychzy, A., Rein, T., Winklhofer, K. F., Hartl, F. U. et al., Cofactor Tpr2 combines two TPR domains and a J domain to regulate the Hsp70/Hsp90 chaperone system. EMBO J. 2003, 22, 3613-3623.
    • Brychzy, A., Rein, T., Winklhofer, K. F., Hartl, F. U. et al., Cofactor Tpr2 combines two TPR domains and a J domain to regulate the Hsp70/Hsp90 chaperone system. EMBO J. 2003, 22, 3613-3623.
  • 30
    • 0033133919 scopus 로고    scopus 로고
    • The WD repeat: A common architecture for diverse functions
    • Smith, T. F., Gaitatzes, C., Saxena, K., Neer, E. J., The WD repeat: A common architecture for diverse functions. TIBS 1999, 24, 181-185.
    • (1999) TIBS , vol.24 , pp. 181-185
    • Smith, T.F.1    Gaitatzes, C.2    Saxena, K.3    Neer, E.J.4
  • 31
    • 0028076764 scopus 로고
    • The ancient regulatory-protein family of WD-repeat proteins
    • Neer, E. J., Schmidt, C. J., Nambudripad, R., Smith, T. F., The ancient regulatory-protein family of WD-repeat proteins. Nature 1994, 371, 297-300.
    • (1994) Nature , vol.371 , pp. 297-300
    • Neer, E.J.1    Schmidt, C.J.2    Nambudripad, R.3    Smith, T.F.4
  • 32
    • 0031836475 scopus 로고    scopus 로고
    • Homologues of proteasome subunits are regulators of transcription and translation
    • Aravind, L., Ponting, C. P., Homologues of proteasome subunits are regulators of transcription and translation. Protein Sci. 1998, 7, 1250-1254.
    • (1998) Protein Sci , vol.7 , pp. 1250-1254
    • Aravind, L.1    Ponting, C.P.2
  • 33
    • 0029328549 scopus 로고
    • A 200-amino acid ATPase module in search of a basic function
    • Confaloniere, F., Duquet, M., A 200-amino acid ATPase module in search of a basic function. Bioessays 1995, 17, 639-650.
    • (1995) Bioessays , vol.17 , pp. 639-650
    • Confaloniere, F.1    Duquet, M.2
  • 34
    • 0032411641 scopus 로고    scopus 로고
    • Pontin52, an interaction partner of beta-catenin, binds to the TATA box binding protein
    • Bauer, A., Huber, O., Kemler, R., Pontin52, an interaction partner of beta-catenin, binds to the TATA box binding protein. Proc. Nat. Acad. Sci. 1998, 95, 14787-14792.
    • (1998) Proc. Nat. Acad. Sci , vol.95 , pp. 14787-14792
    • Bauer, A.1    Huber, O.2    Kemler, R.3
  • 35
    • 23844454900 scopus 로고    scopus 로고
    • Myc interacts genetically with Tip48_Reptin and Tip49_Pontin to control growth and proliferation during Drosophila development
    • Bellosta, P., Hulf, T., Diop, S. B., Usseglio, F. et al., Myc interacts genetically with Tip48_Reptin and Tip49_Pontin to control growth and proliferation during Drosophila development. Proc. Nat. Acad. Sci. 2005, 102, 11799-11804.
    • (2005) Proc. Nat. Acad. Sci , vol.102 , pp. 11799-11804
    • Bellosta, P.1    Hulf, T.2    Diop, S.B.3    Usseglio, F.4
  • 36
    • 0033859666 scopus 로고    scopus 로고
    • An ATPase/helicase complex is an essential cofactor for oncogenic transformation by c-Myc
    • Wood, M. A., McMahon, S. B., Cole, M. D., An ATPase/helicase complex is an essential cofactor for oncogenic transformation by c-Myc. Mol. Cell 2000, 5, 321-330.
    • (2000) Mol. Cell , vol.5 , pp. 321-330
    • Wood, M.A.1    McMahon, S.B.2    Cole, M.D.3
  • 37
    • 0025922586 scopus 로고
    • A novel protein repeat motif from mitosis to transcription
    • The TPR snap helix
    • Goebl, M., Yanagida, M., The TPR snap helix: A novel protein repeat motif from mitosis to transcription. TIBS 1991, 16, 173-177.
    • (1991) TIBS , vol.16 , pp. 173-177
    • Goebl, M.1    Yanagida, M.2
  • 38
    • 0025804492 scopus 로고
    • The CYC8 and TUP1 proteins involved in glucose repression in Saccharomyces cerevisiae are associated in a protein complex
    • Williams, F. E., Varanasi, U., Trumbly, R. J., The CYC8 and TUP1 proteins involved in glucose repression in Saccharomyces cerevisiae are associated in a protein complex. Mol. Cell. Biol. 1991, 11, 3307-3316.
    • (1991) Mol. Cell. Biol , vol.11 , pp. 3307-3316
    • Williams, F.E.1    Varanasi, U.2    Trumbly, R.J.3
  • 39
    • 0031043134 scopus 로고    scopus 로고
    • Ultraviolet radiation sensitivity and reduction of telomeric silencing in Saccharomyces cerevisiae cells lacking chromatin assembly factor-I
    • Kaufman, P. D., Kobayashi, R., Stillman, B., Ultraviolet radiation sensitivity and reduction of telomeric silencing in Saccharomyces cerevisiae cells lacking chromatin assembly factor-I. Genes Dev. 1997, 11, 345-357.
    • (1997) Genes Dev , vol.11 , pp. 345-357
    • Kaufman, P.D.1    Kobayashi, R.2    Stillman, B.3
  • 40
    • 0035902602 scopus 로고    scopus 로고
    • Histone deacetylase dependent transcriptional repression by pRB in yeast occurs independently of interaction through the LXCXE binding cleft
    • Kennedy, B. K., Liu, O. W., Dick, F. A., Dyson, N. et al., Histone deacetylase dependent transcriptional repression by pRB in yeast occurs independently of interaction through the LXCXE binding cleft. Proc. Natl. Acad. Sci. USA 2001, 98, 8720-8725.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 8720-8725
    • Kennedy, B.K.1    Liu, O.W.2    Dick, F.A.3    Dyson, N.4


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