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Volumn 79, Issue 4, 2008, Pages 571-578

Characterization of a dITPase from the hyperthermophilic archaeon Thermococcus onnurineus NA1 and its application in PCR amplification

Author keywords

dITP generation; dITPase; Family B type DNA polymerase; Hypoxanthine; Thermococcus

Indexed keywords

DNA; REACTION KINETICS;

EID: 44649096316     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-008-1467-5     Document Type: Article
Times cited : (8)

References (38)
  • 1
    • 33845593742 scopus 로고    scopus 로고
    • Thermococcus onnurineus sp. nov., a hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent area at the PACMANUS field
    • Bae SS, Kim YJ, Yang SH, Lim JK, Jeon JH, Lee HS, Kang SG, Kim S-J, Lee J-H (2006) Thermococcus onnurineus sp. nov., a hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent area at the PACMANUS field. J Microbiol Biotechnol 16:1826-1831
    • (2006) J Microbiol Biotechnol , vol.16 , pp. 1826-1831
    • Bae, S.S.1    Kim, Y.J.2    Yang, S.H.3    Lim, J.K.4    Jeon, J.H.5    Lee, H.S.6    Kang, S.G.7    Kim, S.-J.8    Lee, J.-H.9
  • 2
    • 0028211009 scopus 로고
    • PCR amplification of up to 35-kb DNA with high fidelity and high yield from l bacteriophage templates
    • Barnes WM (1994) PCR amplification of up to 35-kb DNA with high fidelity and high yield from l bacteriophage templates. Proc Natl Acad Sci U S A 91:2216-2220
    • (1994) Proc Natl Acad Sci U S a , vol.91 , pp. 2216-2220
    • Barnes, W.M.1
  • 3
    • 0017184389 scopus 로고
    • A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
    • Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72:248-254
    • (1976) Anal Biochem , vol.72 , pp. 248-254
    • Bradford, M.M.1
  • 4
    • 34848827123 scopus 로고    scopus 로고
    • Characterization of a dUTPase from the hyperthermophilic archaeon Thermococcus onnurineus NA1 and its application in polymerase chain reaction amplification
    • Cho Y, Lee HS, Kim YJ, Kang SG, Kim SJ, Lee JH (2007) Characterization of a dUTPase from the hyperthermophilic archaeon Thermococcus onnurineus NA1 and its application in polymerase chain reaction amplification. Mar Biotechnol 9:450-458
    • (2007) Mar Biotechnol , vol.9 , pp. 450-458
    • Cho, Y.1    Lee, H.S.2    Kim, Y.J.3    Kang, S.G.4    Kim, S.J.5    Lee, J.H.6
  • 5
    • 0035879027 scopus 로고    scopus 로고
    • Biochemical characterization of a novel hypoxanthine/xanthine dNTP pyrophosphatase from Methanocaldococcus jannaschii
    • Chung JH, Back JH, Park YI, Han YS (2001) Biochemical characterization of a novel hypoxanthine/xanthine dNTP pyrophosphatase from Methanocaldococcus jannaschii. Nucleic Acids Res 29:3099-3107
    • (2001) Nucleic Acids Res , vol.29 , pp. 3099-3107
    • Chung, J.H.1    Back, J.H.2    Park, Y.I.3    Han, Y.S.4
  • 6
    • 0141539507 scopus 로고    scopus 로고
    • 6-tagged hyper-thermostable dUTPase from Pyrococcus woesei in Escherichia coli: Application in PCR
    • 6-tagged hyper-thermostable dUTPase from Pyrococcus woesei in Escherichia coli: application in PCR. Protein Expr Purif 31:72-78
    • (2003) Protein Expr Purif , vol.31 , pp. 72-78
    • Dabrowski, S.1    Ahring, B.K.2
  • 7
    • 0036894880 scopus 로고    scopus 로고
    • Structural basis for uracil recognition by archaeal family B DNA polymerases
    • Fogg MJ, Pearl LH, Connolly BA (2002) Structural basis for uracil recognition by archaeal family B DNA polymerases. Nature Struct Biol 9:922-927
    • (2002) Nature Struct Biol , vol.9 , pp. 922-927
    • Fogg, M.J.1    Pearl, L.H.2    Connolly, B.A.3
  • 9
    • 34548426097 scopus 로고    scopus 로고
    • Interaction of the family-B DNA polymerase from the archaeon Pyrococcus furiosus with deaminated bases
    • Gill S, O'Neill R, Lewis RJ, Connolly BA (2007) Interaction of the family-B DNA polymerase from the archaeon Pyrococcus furiosus with deaminated bases. J Mol Biol 372:855-863
    • (2007) J Mol Biol , vol.372 , pp. 855-863
    • Gill, S.1    O'Neill, R.2    Lewis, R.J.3    Connolly, B.A.4
  • 11
    • 0031744571 scopus 로고    scopus 로고
    • Hyperthermophiles and the problems of DNA instability
    • Grogan DW (1998) Hyperthermophiles and the problems of DNA instability. Mol Microbiol 28:1043-1049
    • (1998) Mol Microbiol , vol.28 , pp. 1043-1049
    • Grogan, D.W.1
  • 12
    • 0034175750 scopus 로고    scopus 로고
    • The question of DNA repair in hyperthermophilic archaea
    • Grogan DW (2000) The question of DNA repair in hyperthermophilic archaea. Trends Microbiol 8:180-185
    • (2000) Trends Microbiol , vol.8 , pp. 180-185
    • Grogan, D.W.1
  • 13
  • 14
    • 0022993948 scopus 로고
    • Site-specific mutagenesis in vivo by single methylated or deaminated purine bases
    • Hill-Perkins M, Jones MD, Karran P (1986) Site-specific mutagenesis in vivo by single methylated or deaminated purine bases. Mutat Res 162:153-163
    • (1986) Mutat Res , vol.162 , pp. 153-163
    • Hill-Perkins, M.1    Jones, M.D.2    Karran, P.3
  • 15
    • 0037154224 scopus 로고    scopus 로고
    • Archaeal dUTPase enhances PCR amplifications with archaeal DNA polymerases by preventing dUTP incorporation
    • Hogrefe HH, Hansen CJ, Scott BR, Nelson KB (2002) Archaeal dUTPase enhances PCR amplifications with archaeal DNA polymerases by preventing dUTP incorporation. Proc Natl Acad Sci U S A 99:596-601
    • (2002) Proc Natl Acad Sci U S a , vol.99 , pp. 596-601
    • Hogrefe, H.H.1    Hansen, C.J.2    Scott, B.R.3    Nelson, K.B.4
  • 16
    • 0035000622 scopus 로고    scopus 로고
    • Diversity among three novel groups of hyperthermophilic deep-sea Thermococcus species from three sites in the northeastern Pacific Ocean
    • Holden JF, Takai K, Summit M, Bolton S, Zyskowski J, Baross JA (2001) Diversity among three novel groups of hyperthermophilic deep-sea Thermococcus species from three sites in the northeastern Pacific Ocean. FEMS Microbiol Ecol 36:51-60
    • (2001) FEMS Microbiol Ecol , vol.36 , pp. 51-60
    • Holden, J.F.1    Takai, K.2    Summit, M.3    Bolton, S.4    Zyskowski, J.5    Baross, J.A.6
  • 17
    • 0025766848 scopus 로고
    • Compilation and alignment of DNA polymerases
    • Ito J, Braithwaite DK (1991) Compilation and alignment of DNA polymerases. Nucleic Acids Res 19:4045-4057
    • (1991) Nucleic Acids Res , vol.19 , pp. 4045-4057
    • Ito, J.1    Braithwaite, D.K.2
  • 18
    • 0019331557 scopus 로고
    • Hypoxanthine in deoxyribonucleic acid: Generation by heat-induced hydrolysis of adenine residues and release in free form by a deoxyribonucleic acid glycosylase from calf thymus
    • Karran P, Lindahl T (1980) Hypoxanthine in deoxyribonucleic acid: generation by heat-induced hydrolysis of adenine residues and release in free form by a deoxyribonucleic acid glycosylase from calf thymus. Biochemistry 19:6005-6011
    • (1980) Biochemistry , vol.19 , pp. 6005-6011
    • Karran, P.1    Lindahl, T.2
  • 20
    • 0027391640 scopus 로고
    • Characterization of a DNA polymerase from the hyperthermophile archaea Thermococcus litoralis. Vent DNA polymerase, steady state kinetics, thermal stability, processivity, strand displacement, and exonuclease activities
    • Kong H, Kucera RB, Jack WE (1993) Characterization of a DNA polymerase from the hyperthermophile archaea Thermococcus litoralis. Vent DNA polymerase, steady state kinetics, thermal stability, processivity, strand displacement, and exonuclease activities. J Biol Chem 268:1965-1975
    • (1993) J Biol Chem , vol.268 , pp. 1965-1975
    • Kong, H.1    Kucera, R.B.2    Jack, W.E.3
  • 21
    • 0036801346 scopus 로고    scopus 로고
    • Repair of deaminated bases in DNA
    • Kow YW (2002) Repair of deaminated bases in DNA. Free Radic Biol Med 33:886-893
    • (2002) Free Radic Biol Med , vol.33 , pp. 886-893
    • Kow, Y.W.1
  • 22
    • 0029929717 scopus 로고    scopus 로고
    • Archaebacterial DNA polymerases tightly bind uracil-containing DNA
    • Lasken RS, Schuster DM, Rashtchian A (1996) Archaebacterial DNA polymerases tightly bind uracil-containing DNA. J Biol Chem 271:17692-17696
    • (1996) J Biol Chem , vol.271 , pp. 17692-17696
    • Lasken, R.S.1    Schuster, D.M.2    Rashtchian, A.3
  • 23
    • 0016257644 scopus 로고
    • Heat-induced deamination of cytosine residues in deoxyribonucleic acid
    • Lindahl T, Nyberg B (1974) Heat-induced deamination of cytosine residues in deoxyribonucleic acid. Biochemistry 13:3405-3410
    • (1974) Biochemistry , vol.13 , pp. 3405-3410
    • Lindahl, T.1    Nyberg, B.2
  • 24
    • 0018620965 scopus 로고
    • DNA glycosylases, endonucleases for apurinic/apyrimidinic sites and base excision-repair
    • Lindahl T (1979) DNA glycosylases, endonucleases for apurinic/ apyrimidinic sites and base excision-repair. Prog Nucleic Acid Res Mol Biol 22:135-192
    • (1979) Prog Nucleic Acid Res Mol Biol , vol.22 , pp. 135-192
    • Lindahl, T.1
  • 25
    • 0027278557 scopus 로고
    • Instability and decay of the primary structure of DNA
    • Lindahl T (1993) Instability and decay of the primary structure of DNA. Nature 362:709-715
    • (1993) Nature , vol.362 , pp. 709-715
    • Lindahl, T.1
  • 26
    • 0025788241 scopus 로고
    • High-fidelity amplification using a thermostable DNA polymerase isolated from Pyrococcus furiosus
    • Lundberg KS, Shoemaker DD, Adams MW, Short JM, Sorge JA, Mathur EJ (1991) High-fidelity amplification using a thermostable DNA polymerase isolated from Pyrococcus furiosus. Gene 108:1-6
    • (1991) Gene , vol.108 , pp. 1-6
    • Lundberg, K.S.1    Shoemaker, D.D.2    Adams, M.W.3    Short, J.M.4    Sorge, J.A.5    Mathur, E.J.6
  • 27
    • 0025764762 scopus 로고
    • Fidelity of DNA synthesis by the Thermococcus litoralis DNA polymerase-an extremely heat stable enzyme with proofreading activity
    • Mattila P, Korpela J, Tenkanen T, Pitkanen K (1991) Fidelity of DNA synthesis by the Thermococcus litoralis DNA polymerase-an extremely heat stable enzyme with proofreading activity. Nucleic Acids Res 19:4967-4973
    • (1991) Nucleic Acids Res , vol.19 , pp. 4967-4973
    • Mattila, P.1    Korpela, J.2    Tenkanen, T.3    Pitkanen, K.4
  • 32
    • 0034705405 scopus 로고    scopus 로고
    • Uracil-DNA glycosylase in the extreme thermophile Archaeoglobus fulgidus
    • Sandigursky M, Franklin WA (2000) Uracil-DNA glycosylase in the extreme thermophile Archaeoglobus fulgidus. J Biol Chem 275:19146-19149
    • (2000) J Biol Chem , vol.275 , pp. 19146-19149
    • Sandigursky, M.1    Franklin, W.A.2
  • 33
    • 0035839610 scopus 로고    scopus 로고
    • Biochemical characterization of uracil processing activities in the hyperthermophilic archaeon Pyrobaculum aerophilum
    • Sartori AA, Schar P, Fitz-Gibbon S, Miller JE, Jiriciny J (2001) Biochemical characterization of uracil processing activities in the hyperthermophilic archaeon Pyrobaculum aerophilum. J Biol Chem 276:29979-29986
    • (2001) J Biol Chem , vol.276 , pp. 29979-29986
    • Sartori, A.A.1    Schar, P.2    Fitz-Gibbon, S.3    Miller, J.E.4    Jiriciny, J.5
  • 34
    • 0014223593 scopus 로고
    • The reaction of ribonucleotides with nitrous acid. Side products and kinetics
    • Shapiro R, Pohl SH (1968) The reaction of ribonucleotides with nitrous acid. Side products and kinetics. Biochemistry 7:448-455
    • (1968) Biochemistry , vol.7 , pp. 448-455
    • Shapiro, R.1    Pohl, S.H.2
  • 36
    • 0030014622 scopus 로고    scopus 로고
    • Cloning of thermostable DNA polymerases from hyperthermophilic marine archaea with emphasis on Thermococcus sp. 9 degrees N-7 and mutations affecting 3¢-5¢ exonuclease activity
    • Southworth MW, Kong H, Kucera RB, Ware J, Jannasch HW, Perler FB (1996) Cloning of thermostable DNA polymerases from hyperthermophilic marine archaea with emphasis on Thermococcus sp. 9 degrees N-7 and mutations affecting 3′-5′ exonuclease activity. Proc Natl Acad Sci U S A 93:5281-5285
    • (1996) Proc Natl Acad Sci U S a , vol.93 , pp. 5281-5285
    • Southworth, M.W.1    Kong, H.2    Kucera, R.B.3    Ware, J.4    Jannasch, H.W.5    Perler, F.B.6
  • 38
    • 0033951180 scopus 로고    scopus 로고
    • Characterization of a thermostable DNA glycosylase specific for U/G and T/G mismatches from the hyperthermophilic archaeon Pyrobaculum aerophilum
    • Yang H, Fitz-Gibbon S, Marcotte EM, Tai JH, Hyman EC, Miller JH (1999) Characterization of a thermostable DNA glycosylase specific for U/G and T/G mismatches from the hyperthermophilic archaeon Pyrobaculum aerophilum. J Bacteriol 182:1272-1279
    • (1999) J Bacteriol , vol.182 , pp. 1272-1279
    • Yang, H.1    Fitz-Gibbon, S.2    Marcotte, E.M.3    Tai, J.H.4    Hyman, E.C.5    Miller, J.H.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.