Organizational structure and electronic decoupling of surface bound chiral domains and biomolecules

IEEE Sensors Journal

Volumn 8, Issue 6, 2008, Pages 758-766

  Santagata, Nancy M ^a   Luo, Pengshun ^a   Lakhani, Amit M ^a   De Witt, Darryl J ^a   Day, B Scott ^b   Norton, Michael L ^b   Pearl, Thomas P ^a  

^a NORTH CAROLINA STATE UNIVERSITY   (United States)

^b MARSHALL UNIVERSITY   (United States)

Author keywords

Biomolecules; Metals; Microscopy; Monolayer; Surfaces

Indexed keywords

CHEMICAL PROPERTIES; ELECTRONIC PROPERTIES; FLOW INTERACTIONS; MOLECULAR BIOLOGY; MOLECULAR STRUCTURE; SURFACE PROPERTIES; SURFACES;

(1 1 0) SURFACE; (PL) PROPERTIES; CHEMICAL SPECIES; CHIRAL MOLECULES; ELECTRONIC CHARACTERISTICS; ELECTRONIC DECOUPLING; EXTERNAL FIELDS; MODEL SYSTEMS; MOLECULAR DOMAINS; MOLECULAR SYSTEMS; ORGANIZATIONAL STRUCTURING; PAPER ADDRESSES; REAGENT-LESS; SINGLE MOLECULE DETECTION (SMD); SINGLE-MOLECULE LEVELS; TARTARIC ACID (TA); TERAHERTZ (THZ) RADIATION; TWO TYPES;

MOLECULES;

EID: 44649091270     PISSN: 1530437X     EISSN: None     Source Type: Journal    
DOI: 10.1109/JSEN.2008.923187     Document Type: Article

References (57)

1. E. C. H. Sykes, P. Han, S. A. Kandel, K. F. Kelly, G. S. McCarty, and P. S. Weiss, "Substrate-mediated interactions and intermolecular forces between molecules adsorbed on surfaces," Accounts Chem. Res., vol. 36, pp. 945-953, 2003.
2. 2 on Au(111) at 4 K," J. Phys. Chem. A, vol. 107, pp. 8124-8129, 2003.
3. M. Kulawik, H. P. Rust, M. Heyde, N. Nilius, B. A. Mantooth, P. S. Weiss, and H. J. Freund, "Interaction of CO molecules with surface state electrons on Ag(111)," Surface Sci., vol. 590, pp. L253-L258, 2005.
4. Y. Wang, X. Yin, M. Shi, W. Li, L. Zhang, and J. Kong, "Probing chiral amino acids at sub-picomolar level based on bovine serum albumin enantioselective films coupled with silver-enhanced gold nanoparticles," Talanta, vol. 69, pp. 1240-1245, 2006.
5. T. G. Drummond, M. G. Hill, and J. K. Barton, "Electrochemical DNA sensors," Nature Biotechnol., vol. 21, pp. 1192-1199, 2003.
6. D. Coleman, D. Mueller, N. A. Clark, J. E. Maclennan, R. F. Shao, S. Bardon, and D. M. Walba, "Control of molecular orientation in electrostatically stabilized ferroelectric liquid crystals," Phys. Rev. Lett., vol. 91, p. 175505, 2003.
7. E.D. Minot, Y.Yaish, V. Sazonova, and P. L.McEuen, "Determination of electron orbital magnetic moments in carbon nanotubes," Nature, vol. 428, pp. 536-539, 2004.
8. H. W. Zhao, D. C. Hsu, and P. R. Carlier, "Memory of chirality: An emerging strategy for asymmetric synthesis," Synthesis-Stuttgart, vol. 1, pp. 1-16, 2004.
9. H. Urata, "Effect of chirality of ribose on nucleic acid structure and function," J. Pharmaceutical Soc. Jpn., vol. 119, pp. 689-709, 1999.
10. M. A. Mateos-Timoneda, M. Crego-Calama, and D. N. Reinhoudt, "Supramolecular chirality of self-assembled systems in solution," Chem. Soc. Rev., vol. 33, pp. 363-372, 2004.
11. M. A. Stroscio and M. Dutta, "Integrated biological-semiconductor devices," Proc. IEEE, vol. 93, pp. 1772-1783, 2005.
12. N. C. Seeman, "DNA in a material world," Nature, vol. 421, pp. 33-37, 2003.
13. M. Norton, A. Barhoumi, and D. Neff, "Templates for sequential assembly of DNA based nanostructures," in Proc. IEEE Conf. Nanotechnol., 2005, pp. 77-79.
14. I. Horcas, R. Fernández, J. M. Gómez-Rodríguez, J. Colchero, J. Gómez-Herrero, and A. M. Baro, "WSxM: A software for scanning probe microscopy and a tool for nanotechnology," Rev. Sci. Instrum., vol. 78, p. 013705, 2007.
15. S. M. Barlow and R. Raval, "Complex organic molecules at metal surfaces: Bonding, organisation and chirality," Surface Sci. Rep., vol. 50, pp. 201-341, 2003.
16. M. O. Lorenzo, C. J. Baddeley, C. Muryn, and R. Raval, "Extended surface chirality from supramolecular assemblies of adsorbed chiral molecules," Nature, vol. 404, pp. 376-379, 2000.
17. S. Weigelt, C. Busse, L. Petersen, E. Rauls, B. Hammer, K. V. Gothelf, F. Besenbacher, and T.R. Linderoth, "Chiral switching by spontaneous conformational change in adsorbed organicmolecules," Nature Mater., vol. 5, pp. 112-117, 2006.
18. A. M. Lakhani, D. J. DeWitta, N. M. Sant'Agata, and T. P. Pearl, "Persistence of chirality for a weakly bound adsorbate: (R,R)-and (S,S)-tartaric acid/Ag(111)," J. Phys. Chem. C, vol. 111, pp. 5750-5755, 2007.
19. D. Wang, H. J. Yan, Q. M. Xu, M. J. Han, and L. J. Wan, "Surface structure of heterogeneous catalysts: Cinchona and tartaric acid on solid surface," Topics in Catalysis, vol. 35, pp. 131-139, 2005.
20. W. A. Hofer, V. Humblot, and R. Raval, "Conveying chirality onto the electronic structure of achiral metals: (R,R)-tartaric acid on nickel," Surface Sci., vol. 554, pp. 141-149, 2004.
21. T.E.Jones and C. J.Baddeley, "Direct STM evidence of asurface interaction between chiral modifier and pro-chiral reagent: Methylacetoacetate on R,R-tartaric acid modified Ni{111}," Surface Sci., vol. 519, pp. 237-249, 2002.
22. M. O. Lorenzo, S. Haq, T. Bertrams, P. Murray, R. Raval, and C. J. Baddeley, "Creating chiral surfaces for enantioselective heterogeneous catalysis: R,R-Tartaric acid on Cu(110)," J. Phys. Chem. B, vol. 103, pp. 10661-10669, 1999.
23. T. E. Jones and C. J. Baddeley, "A RAIRS, STM and TPD study of the Ni{111}/R,R-tartaric acid system: Modelling the chiral modification of Ni nanoparticles," Surface Sci., vol. 513, pp. 453-467, 2002.
24. A. M. Lakhani, S. J. Kelly, and T. P. Pearl, "Design and operation of a versatile, ultrahigh vacuum, low temperature scanning probe microscope," Rev. Scientific Instruments, vol. 77, p. 043709, 2006.
25. S. Romer, B. Behzadi, R. Fasel, and K. H. Ernst, "Homochiral conglomerates and racemic crystals in two dimensions: Tartaric acid on Cu(110)," Chemistry-a Eur. J., vol. 11, pp. 4149-4154, 2005.
26. J. T. Li, W. D. Schneider, and R. Berndt, "Local density of states from spectroscopic scanning-tunneling-microscope images: Ag(111)," Phys. Rev. B, vol. 56, pp. 7656-7659, 1997.
27. C. Dekker and M. A. Ratner, "Electronic properties of DNA," Phys. World, vol. 14, pp. 29-33, 2001.
28. M. A. O'Neill and J. K. Barton, "DNA-mediated charge transport chemistry and biology," Long-Range Charge Transfer in DNA I, vol. 236, Topics in Current Chemistry, pp. 67-115, 2004.
29. M. A. O'Neill and J. K. Barton, "DNA charge transport: Conformationally gated hopping through stacked domains," J. Amer. Chem. Soc., vol. 126, pp. 11471-11483, 2004.
30. M. A. O'Neill and J. K. Barton, "DNA-mediated charge transport requires conformational motion of the DNA bases: Elimination of charge transport in rigid glasses at 77 K," J. Amer. Chem. Soc., vol. 126, pp. 13234-13235, 2004.
31. D. Porath, G. Cuniberti, and R. Di Felice, "Charge transport in DNA-based devices," Long-Range Charge Transfer in DNA Ii, vol. 237, Topics in Current Chemistry, pp. 183-227, 2004.
32. R. G. Endres, D. L. Cox, and R. R. P. Singh, "Colloquium: The quest for high-conductance DNA," Rev. Modern Phys., vol. 76, pp. 195-214, 2004.
33. A. J. Storm, J. van Noort, S. de Vries, and C. Dekker, "Insulating behavior for DNA molecules between nanoelectrodes at the 100 nm length scale," Appl. Phys. Lett., vol. 79, pp. 3881-3883, 2001.
34. H. W. Fink and C. Schonenberger, "Electrical conduction through DNA molecules," Nature, vol. 398, pp. 407-410, 1999.
35. D. Porath, A. Bezryadin, S. de Vries, and C. Dekker, "Direct measurement of electrical transport through DNA molecules," Nature, vol. 403, pp. 635-638, 2000.
36. A. Y. Kasumov, M. Kociak, S. Gueron, B. Reulet, V. T. Volkov, D. V. Klinov, and H. Bouchiat, "Proximity-induced superconductivity in DNA," Science, vol. 291, pp. 280-282, 2001.
37. Y. Zhang, R. H. Austin, J. Kraeft, E. C. Cox, and N. P. Ong, "Insulating behavior of lambda-DNA on the micron scale," Phys. Rev. Lett., vol. 89, p. 198102, 2002.
38. S. M. Iqbal, G. Balasundaram, S. Ghosh, D. E. Bergstrom, and R. Bashir, "Direct current electrical characterization of ds-DNA in nanogap junctions," Appl. Phys. Lett., vol. 86, 2005.
39. V. J. Morris, "Biological applications ofscanning probe microscopies," Progress in Biophys. Molecular Biol., vol. 61, pp. 131-185, 1994.
40. D. P. Allison, L. A. Bottomley, T. Thundat, G. M. Brown, R. P. Woychik, J.J. Schrick, K. B. Jacobson, and R. J.Warmack, "Immobilization of DNA for scanning probe microscopy," Proc. Natl. Acad. Sci. United States of America, vol. 89, pp. 10129-10133, 1992.
41. S. M. Lindsay and B. Barris, "Imaging deoxyribose nucleic-acid molecules on a metal-surface under water by scanning tunneling microscopy," J. Vacuum Sci. Technol. a-Vacuum Surfaces and Films, vol. 6, pp. 544-547, 1988.
42. H. Tanaka and T. Kawai, "Scanning tunneling microscopy imaging and manipulation of DNA oligomer adsorbed on Cu(111) surfaces by a pulse injection method," J. Vacuum Sci. Technol. B, vol. 15, pp. 602-604, 1997.
43. D. Rekesh, Y. Lyubchenko, L. S. Shlyakhtenko, and S. M. Lindsay, "Scanning tunneling microscopy of mercapto-hexyl-oligonucleotides attached to gold," Biophy. J., vol. 71, pp. 1079-1086, 1996.
44. Y. Yoshida, Y. Nojima, H. Tanaka, and T. Kawai, "Scanning tunneling spectroscopy of single-strand deoxyribonucleic acid for sequencing," J. Vacuum Sci. Technol. B, vol. 25, pp. 242-246, 2007.
45. M.Zwolak andM. DiVentra, "Electronic signature ofDNA nucleotides via transverse transport,"Nano Lett., vol.5, pp. 421-424, 2005.
46. F. Moresco, L. Gross, M. Alemani, K. H. Rieder, H. Tang, A. Gourdon, and C. Joachim, "Probing the different stages in contacting a single molecular wire," Phys. Rev. Lett., vol. 91, p. 036601, 2003.
47. B. S. Day and M. L. Norton, in preparation, 2007.
48. J. A. Williams and C. B. Gorman, "Scanning tunneling microscopybased replacement lithography on self-assembled monolayers: Comparison of gold, palladium, and platinum substrates," Langmuir, vol. 23, pp. 3103-3105, 2007.
49. E. Shapir, J. Y. Yi, H. Cohen, A. B. Kotlyar, G. Cuniberti, and D. Porath, "The puzzle of contrast inversion in DNA STM imaging," J. Phys. Chem. B, vol. 109, pp. 14270-14274, 2005.
50. G. E. Poirier, "Characterization of organosulfur molecular monolayers on Au(111) using scanning tunneling microscopy," Chem. Rev., vol. 97, pp. 1117-1127, 1997.
51. H. Wackerbarth, M. Grubb, J. Wengel, I. Chorkendorff, and J. Ulstrup, "Adsorption and surface dynamics of short DNA and LNA oligonucleotides on single-crystal Au(111) electrode surfaces," Surface Sci., vol. 600, pp. L122-L127, 2006.
52. H. Wackerbarth, R. Marie, M. Grubb, J. D. Zhang, A. G. Hansen, I. Chorkendorff, C. B. V. Christensen, A. Boisen, and J. Ulstrup, "Thiol-and disulfide-modified oligonucleotide monolayer structures on poly-crystalline and single-crystal Au(111) surfaces," J. Solid State Electrochem., vol. 8, pp. 474-481, 2004.
53. H. Wackerbarth, M. Grubb, J. D. Zhang, A. G. Hansen, and J. Ul-strup, "Long-range order of organized oligonucleotide monolayers on Au(111) electrodes," Langmuir, vol. 20, pp. 1647-1655, 2004.
54. H. Wackerbarth, M. Grubb, J. D. Zhang, A. G. Hansen, and J. Ulstrup, "Dynamics of ordered-domain formation of DNA fragments on Au(111) with molecular resolution," Angewandte Chemie-International Edition, vol. 43, pp. 198-203, 2004.
55. M. S. Xu, S. Tsukamoto, S. Ishida, M. Kitamura, Y. Arakawa, R. G. Endres, and M. Shimoda, "Conductance of single thiolated poly(GC)-poly(GC) DNA molecules," Appl. Phys. Lett., vol. 87, 2005.
56. M. S. Xu, R. G. Endres, S. Tsukamoto, M. Kitamura, S. Ishida, and Y. Arakawa, "Conformation and local environment dependent conductance of DNA molecules," Small, vol. 1, pp. 1168-1172, 2005.
57. 2-oligonucleotide nanocomposites," Nature Mater., vol. 2, pp. 343-346, 2003.