Integrated biological-semiconductor devices

Proceedings of the IEEE

Volumn 93, Issue 10, 2005, Pages 1772-1783

  Stroscio, Michael A ^a,b,c,d,e,f   Dutta, Mitra ^a,b,c,d,f,g  

^a IEEE   (United States)

^b UNIVERSITY OF ILLINOIS AT CHICAGO   (United States)

^c Department of Bioengineering ^*  (United States)

^d AAAS   (United States)

^e AMERICAN PHYSICAL SOCIETY   (United States)

^f U S ARMY RESEARCH LABORATORY   (United States)

^g OPTICAL SOCIETY OF AMERICA   (United States)

Author keywords

Bioelectronics; Biomolecules; Carbon nanotubes (CNTs); DNA; Integrated nanostructures; Integrins; Ion channels; Membrane potential; Nanoelectronics; Optoelectronics; Peptides; Phospholipid bilayer; Proteins; Receptors; Transmembrane proteins

Indexed keywords

BIOELECTRIC PHENOMENA; CARBON NANOTUBES; DNA; OPTOELECTRONIC DEVICES; POLYPEPTIDES; PROTEINS;

BIOMOLECULES; INTEGRATED NANOSTRUCTURES; INTEGRINS; ION CHANNELS; MEMBRANE POTENTIAL; NANOELECTRONICS; PHOSPHOLIPID BILAYER; RECEPTORS; TRANSMEMBRANE PROTEINS;

SEMICONDUCTOR DEVICES;

EID: 26244462095     PISSN: 00189219     EISSN: None     Source Type: Journal    
DOI: 10.1109/JPROC.2005.853543     Document Type: Conference Paper

References (77)

1. E. R. Kandel, J. H. Schwartz, and T. M. Jessell, Principles of Neural Science 4th ed. New York: McGraw-Hill, 2000.
2. A. L. Hodgkin, The Conduction of the Nervous Impulse. Liverpool, U.K.: Liverpool Univ. Press, 1964.
3. J. Howard, Mechanics of Motor Proteins and the Cytoskeleton. Sunderland, MA: Sinauer, 2001.
4. M. A. Stroscio and M. Dutta Eds., Biological Nanostructures and Applications of Nanostructures in Biology: Electrical, Mechanical & Optical Properties New York: Kluwer, 2004.
5. H. Fernando, G. A. Papadantonakis, N. S. Kim, and P. R. LeBreton, "Conduction-band-edge ionization thresholds of DNA components in aqueous solution," Proc. Nat. Acad. Sci. USA, vol. 95, pp. 5550-5555, 1998.
6. E. W. Schlag, S.-Y. Shen, D.-Y. Yang, H. L. Selzle, and S. H. Lin, "Charge conductivity in peptides: dynamic simulation of a difunctional model supporting experimental data," Proc. Nat. Acad. Sci. USA, vol. 97, pp. 1068-1072, 2002.
7. G. B. Schuster, "Long-range charge transfer in DNA: transient structural distortions control the distance dependence," Acc. Chem. Res., vol. 33, pp. 253-260, 2000.
8. T. Rajh, Z. Saponjic, J. Liu, N. M. Dimitrijevic, N. F. Scherer, M. Vega-Arroyo, P. Zapol, L. A. Curtiss, and M. Thurnauer, "Charge transfer across the nanocrystal-DNA interface: probing DNA recognition," Nano Lett., vol. 4, pp. 1017-1023, 2004.
9. S. V. Rakhmanova and E. M. Conwell, "Polarons motion in DNA," J. Phys. Chem., vol. 105, pp. 2056-2061, 2001.
10. I. Saito, T. Nakamura, K. Nakatani, Y. Yoshioka, K. Yamaguchi, and H. Sugiyama, "Mapping of the hot spots for DNA damage by one-electron oxidation: efficacy of GG doublets and GGG triplets as a trap in long-range hole migration," J. Amer. Chem. Soc., vol. 120, pp. 12686-12687, 1998.
11. P. T. Henderson, D. Jones, G. Hampikian, Y. Kan, and G. B. Schuster, "Long-distance charge transport in duple DNA: the phononassisted polaron-like hopping mechanism," Proc. Nat. Acad. Sci. USA, vol. 96, pp. 8353-8358, 1999.
12. W. M. Gelbart, R. F. Bruinsma, P. A. Pincus, and V. A. Parsegian, "DNA-inspired electrostatics," Phys. Today, pp. 38-44, Sep. 2000.
13. F. D. Lewis, X. Liu, J. Liu, S. E. Miller, R. T. Hayes, and M. R. Waslelewski, "Direct measurement of hole transport dynamics in DNA," Nature, vol. 406, pp. 51-53, 2000.
14. D. Ly, L. Sanii, and G. B. Schuster, "Mechanisms of charge transport in DNA: internally linked anthraquinone conjugates support phononassisted polaron hopping," J. Amer. Chem. Soc., vol. 121, pp. 9400-9410, 1999.
15. U. Santhosh and G. B. Schuster, "Long-distance radical cation reactions in DNA three-way junctions: inter-arm interaction and migration through the junction," Nucl. Acids Res., vol. 31, pp. 5692-5699, 2003.
16. G. Kotzar, M. Freas, P. Abel, A. Fleischman, S. Roy, C. Zorman, J. M. Moran, and J. Melzak, "Evaluation of MEMS materials of construction for implantable medical device," Biomaterials, vol. 23, pp. 2737-2750, 2002.
17. G. Voskerician, M. S. Shive, R. S. Shawgo, H. von Recum, J. M. Anderson, M. J. Cima, and R. Langer, "Biocompatibility and biofouling of MEMS drug delivery devices," Biomaterials, vol. 24, pp. 1959-1967, 2003.
18. A. C. R. Grayson, R. S. Shawgo, A. M. Johnson, N. T. Flynn, Y. Li, M. J. Cima, and R. Langer, "A BioMEMS review: MEMS technology for physiologically integrated devices," Proc. IEEE, vol. 92, no. 1, pp. 6-21, Jan. 2004.
19. A. M. Derfus, W. C. W. Chan, and S. N. Bhatia, "Probing the cytotoxicity of semiconductor quantum dots," Nano Lett., vol. 4, pp. 11-18, 2004.
20. M. Shim, A. Javey, N. Wong Shi Kam, R. J. Chen, and H. Dai, "Functionalization of carbon nanotubes for biocompatibility and bio-molecular recognition," Nano Lett., vol. 2, pp. 285-288, 2002.
21. M. A. Stroscio, M. Dutta, K. Narwani, P. Shi, D. Ramadurai, and S. Rufo, "Integrating and tagging biological structures with nanoscale semiconducting quantum-dot structures," in Biological Nanostructures and Applications of Nanostructures in Biology: Electrical, Mechanical & Optical Properties ser. Bioelectric Engineering M. A. Stroscio and M. Dutta Eds. New York: Kluwer, 2004, pp. 1-36.
22. T. M. Jovin, "Quantum dots finally come of age," Nature Biotechnol., vol. 21, pp. 32-33, 2003.
23. A. P. Alivisatos, "Perspectives on the physical chemistry of semiconductor nanocrystals," J. Phys. Chem., vol. 100, pp. 13226-13239, 1996.
24. E. Klarreich, "Biologists join the dots," Nature, vol. 413, pp. 450-452, 2001.
25. J. K. Jaiswal, H. Mattoussi, J. M. Mauro, and S. M. Simon, "Long term-multiple color imaging of live cells using quantum dot bioconjugates," Nature Biotechnol., vol. 21, pp. 47-51, 2003.
26. X. Wu, H. Liu, J. Liu, K.N. Haley, J.A. Treadway, J. P. Larson, N. Ge, F. Peale, and M. P. Bruchez, "Immunofluorescent labeling of cancer marker Her2 and other cellular targets with semiconductor quantum dots," Nature Biotechnol., vol. 21, pp. 41-46, 2003.
27. M. Bruchez Jr., M. Moronne, P. Gin, S. Weiss, and P. A. Alivisatos, "Semiconductor nanocrystals as fluorescent biological labels," Science, vol. 281, pp. 2013-2016, 1998.
28. W. C. W. Chan and S. Nie, "Quantum dot bioconjugated for ultra-sensitive nonisotropic detection," Science, vol. 281, pp. 2016-2018, 1998.
29. M. Han, X. Gao, J. Z. Su, and S. Nie, "Quantum-dot-tagged microbeads for multiplexed optical coding of biomolecules," Nature Biotechnol., vol. 19, pp. 631-635, 2001.
30. M. Dahan, S. Levi, C. Luccardini, P. Rostaing, B. Riveau, and A. Triller, "Diffusion dynamics of glycine receptors revealed by single-quantum dot tracking," Science, vol. 302, pp. 442-445, 2003.
31. A.D. Andreev and E.P. O'Reilly, "Theory of the electric structure of GaN/AIN hexagonal quantum dots," Phys. Rev. B, vol. 62, pp. 15851-15870, 2001.
32. J. Jerphagnon, "Imvariants of the third-rank Cartesian-tensor: optical nonlinear susceptibilities," Phys. Rev. B, vol. 2, pp. 1091-1098, 1970.
33. M. E. Schmidt, S. A. Blanton, M. A. Hines, and P. Guyot-Sionnest, "Polar CdSe nanocrystals: implications for electronic structure," J. Chem. Phys., vol. 106, pp. 5254-5259, 1997.
34. M. Hines and P. Guyot-Sionnest, "Synthesis and characterization of strongly luminescing ZnS-capped CdSe nanocrystals," J. Phys. Chem., vol. 100, pp. 468-471, 1996.
35. A. M. de Paula, L. C. Barbosa, C. H. B. Cruz, O. L. Alves, J. A. Sanjurjo, and C. L. Cesar, "Quantum confinement effects on the optical phonons of CdTe quantum dots," Superlattices Microstruct., vol. 23, pp. 1104-1106, 1998.
36. C. J. Zhang, H. W. H. Lee, I. M. Kennedy, and S. H. Risbud, "Observation of quantum confined excited states in GaN nanocrystals," Appl. Phys. Lett., vol. 72, pp. 3035-3037, 1998.
37. O.I. Micic, S.P. Ahrenkiel, D. Bertram, and A. J. Nozik, "Synthesis, structure, and optical properties of colloidal GaN quantum dots," Appl. Phys. Lett., vol. 75, pp. 478-480, 1999.
38. M.T. Nenadovic, M. I. Comor, V. Vasic, and O. I. Micic, "Transient bleaching of small PbS colloids," J. Phys. Chem., vol. 94, pp. 6390-6396, 1990.
39. J. L. Machol, F. W. Wise, R. C. Patel, and D. B. Tanner, "Vibronic quantum beats in PbS microcrystals," Phys. Rev. B, vol. 48, pp. 2819-2822, 1993.
40. B. L. Wehrenberg, C. Wang, and P. Guyot-Sionnest, "Interband and intraband optical studies of PbSe colloidal quantum dots," J. Phys. Chem. B, vol. 106, pp. 10634-10640, 2002.
41. Y. Xu and M. A. A. Schoonen, "The absolute energy positions of conduction and valence bands of selected semiconducting minerals," Amer. Mineralogist, vol. 85, pp. 543-556, 2000.
42. M. A. Stroscio and M. Dutta, "Advances in quantum dot research and technology: the path to applications in biology," in Advanced Semiconductor Heterostructures. Singapore: World Scientific, 2003, pp. 101-118.
43. M. Shim and P. Guyot-Sionnest, "Permanent dipole moment and charges in colloidal semiconductors," J. Chem. Phys., vol. 111, pp. 6955-6964, 1999.
44. N. Q. Huong and J. L. Birman, "Origin of polarization on polar nanocrystals," J. Chem. Phys., vol. 108, pp. 1769-1772, 1998.
45. A. Sethuraman, M. A. Stroscio, and M. Dutta, "Potential applications of carbon nanotubes in bioengineering," in Biological Nanostructures and Applications of Nanostructures in Biology: Electrical, Mechanical and Optical Properties ser. Bioelectric Engineering M. A. Stroscio and M. Dutta Eds. New York: Kluwer, 2004, pp. 51-68.
46. M. Kruger, M. R. Buitelaar, T. Nussbaumer, and C. Schonenberger, "Electrochemical carbon nanotube field-effect transistor," Appl. Phys. Lett., vol. 78, pp. 1291-1293, 2000.
47. L. Kavan, P. Rapta, L. Dunsch, M.J. Bronikowski, P. Willis, and R. E. Smalley, "Electrochemical tuning of electronic structure of single walled carbon nanotubes: in-situ Raman and vis-NIR study," J. Phys. Chem. B, vol. 105, pp. 10764-10771, 2001.
48. M. Shim, A. Javey, N. Wong Shi Kam, and H. Dai, "Polyners functionalization for air-stable n-type carbon nanotube field-effect transistors," J. Amer. Chem. Soc., vol. 123, pp. 11512-11571, 2001.
49. G. P. Siddons, D. Merchin, J. H. Back, J. K. Jeong, and M. Shim, "Highly efficient gating and doping of carbon nanotubes with polymer electrolytes," Nano Lett., vol. 4, pp. 927-930, 2004.
50. C. Chen, M. Dutta, and M. A. Stroscio, "Surface-optical phonon assisted transitions in quantum dots," J. Appl. Phys., vol. 96, pp. 2049-2054, 2004.
51. _, "Confined and interface modes in GaN/ZnO heterostructures," J. Appl. Phys., vol. 95, pp. 2540-2546, 2004.
52. M. Vega-Arroyo, P. R. LeBreton, T. Rajh, P. Zapol, and L. A. Curtiss, "Theoretical study of the ionization potential of tyymine: effect of adding conjugated functional groups," Chem. Phys. Lett., vol. 380, pp. 54-62, 2003.
53. D. Alexson, Y. Li, D. Ramadurai, P. Shi, L. George, L. George, M. Uddin, P. Thomas, S. Rufo, M. Dutta, and M. A. Stroscio, "Binding of semiconductor quantum dots to cellular integrins," IEEE Trans. Nanotechnol., vol. 3, no. 1, pp. 86-92, Mar. 2004.
54. A. Raichura, M. Dutta, and M. A. Stroscio, "Deformation potential and acoustic phonon modes for single-wall carbon nanotubes of finite length," J. Appl. Phys., vol. 94, pp. 4060-4065, 2003.
55. _, "Quantized optical vibrational modes of finite-length multi wall nanotubes: optical deformation potential," Superlattices Microstruct., vol. 35, pp. 147-153, 2004.
56. _, "Continuum model for acoustic phonons in nanotubes: Phonon bottleneck," Phys. Stat. Sol. (b), vol. 241, pp. 3448-3453, 2004.
57. M. Dutta and M. A. Stroscio Eds., Advanced Semiconductor Hetreostructures: Novel Devices, Potential Device Applications and Basic Properties Singapore: World Scientific, 2003.
58. M. A. Stroscio and M. Dutta, Phonons in Nanostructures. Cambridge, U.K.: Cambridge Univ. Press, 2001.
59. M. A. Stroscio, M. Dutta, D. Ramadurai, P. Shi, Y. Li, M. Vasudev, D. Alexson, B. Kohanpour, A. Sethuraman, V. Saini, A. Raichura, and J. Yang, "Optical and electrical properties of colloidal quantum dots in electrolytic environments: using biomolecular links in chemically directed assembly of quantum dot networks," J. Comput. Electron., 2005 to be published.
60. S. Rufo, M. Dutta, and M. A. Stroscio, "Acoustic modes in free and embedded quantum dots," J. Appl. Phy., vol. 93, pp. 2900-2906, 2003.
61. M. A. Stroscio, M. Dutta, S. Rufo, and J. Yang, "Dispersion and damping of acoustic phonons in quantum dots," IEEE Trans. Nanotechnol., vol. 3, no. 1, pp. 32-36, Mar. 2004.
62. E. M. Conwell and S. V. Rakhmanova, "Polarons in DNA," Proc. Nat. Acad. Sci. USA, vol. 97, pp. 4556-4560, 2000.
63. W. P. Su, J. R. Schrieffer, and A. J. Heeger, "Soliton excitations in polyacetylene," Phys. Rev. B, vol. 22, pp. 2099-2111, 1980.
64. M. Bykhovskaia, B. Gelmont, T. Globus, D. L. Woolard, A. C. Samuels, T. H. Duong, and K. Zakrzewska, "Prediction of DNA far-IR absorption spectra based on normal mode analysis," Theor. Chem. Acc., vol. 106, pp. 22-27, 2001.
65. D. L. Woolard, T. R. Globus, B. L. Gelmont, M. Bykhovskaia, A. C. Samuels, D. Cookmeyer, J. L. Hester, T. W. Crowe, J. O. Jensen, J. L. Jensen, and W. R. Loerop, "Submillimeter-wave phonon modes in DNA macromolecules," Phys. Rev. E, vol. 65, pp. 051903-1-051903-11, 2002.
66. T. R. Globus, D. L. Woolard, A. C. Samuels, B. L. Gelmont, J. Hesler, and T. W. Crowe, "Su submillimeter-wave Fourier transform spectroscopy of biological macromolecules," J. Appl. Phys., vol. 91, pp. 6105-6113, 2002.
67. 2-oligonucleotide nanocomposites," Nature Mater., vol. 2, pp. 343-346, 2003.
68. 2by surface modification with vitamin C," J. Phys. Chem. B, vol. 103, pp. 3515-3519, 1999.
69. T. Rajh, L. X. Chen, K. Lukas, T. Liu, M. C. Thurnauer, and D. M. Tiede, "Surface restructuring of nanoparticles: an efficient route for ligand-metal oxide crosstalk," J. Phys. Chem. B, vol. 106, pp. 10543-10552, 2002.
70. C. S. Yun, G. A. Khitrov, D. E. Vergona, O. N. Reich, and G. F. Strouse, "Enzymatic manipulation of DNA-nanomaterial constructs," J. Amer. Chem. Soc., vol. 124, pp. 7644-7645, 2002.
71. S. Wang, N. Mamedova, N. A. Kotov, W. Chen, and J. Studer, "Antigen/antibody immunocomplex form CdTe nanoparticle bioconjugates," Nano Lett., vol. 2, pp. 817-822, 2002.
72. Y. Huang, S.-T. Wu, and Y. Zhao, "Photonic switching based on the photoinduced birefringence in bacteriorhodosin films," Appl. Phys. Lett., vol. 84, pp. 2028-2030, 2004.
73. P. Ormos, L. Fabian, L. Oroszi, E. K. Wolff, J. J. Ramsden, and A. Der, "Protein-based integrated optical switching and modulation," Appl. Phys. Lett., vol. 80, pp. 4060-4062, 2002.
74. P. Bhattacharya, J. Xu, G. Vr, D. L. Marcy, and R. Birge, "Monolithically integrated bacteriorhodopsin GaAs field-effect transsitor photoreceiver," Opt. Lett., vol. 27, pp. 839-841, 2002.
75. J. Li, H.T. Ng, A. Cassell, W. Fan, H. Chan, Q. Ye, J. Koehne, J. Han, and M. C. Thurnauer, "Carbon nanotube nanoelectronic array for ultrasensitive dna detection," Nano Lett., vol. 3, pp. 597-602, 2003.
76. S. Ravindan, S. Chaudhary, B. Colburn, M. Ozkan, and C. S. Ozkan, "Covalent coupling of quantum dots to multiwalled carbon nanotubes for electronic device applications," Nano Lett., vol. 3, pp. 447-453, 2003.
77. S. Jaffar, K. T. Nam, A. Khademhosseini, J. Xing, R. S. Langer, and A. M. Belcher, "Layer-by-layer surface modification and patterned electrostatic deposition of quantum dots," Nano Lett., vol. 4, pp.1421-1425, 2004.