Nutritional regulation of mRNA processing

Journal of Nutrition

Volumn 134, Issue 9, 2004, Pages

  Salati, Lisa M ^a   Szeszel Fedorowicz, Wioletta ^a   Tao, Huimin ^a   Gibson, Matthew A ^a   Amir Ahmady, Batoul ^a   Stabile, Laura P ^a   Hodge, Deborah L ^a  

^a WEST VIRGINIA UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

Gene expression; Polyunsaturated fat; Posttranscriptional; RNA splicing

Indexed keywords

CARBOHYDRATE; CIS ACTING ELEMENT; GLUCOSE 6 PHOSPHATE DEHYDROGENASE; MESSENGER RNA; POLYUNSATURATED FATTY ACID; TRIACYLGLYCEROL;

CALORIC INTAKE; CARBOHYDRATE DIET; CONFERENCE PAPER; DIET; ENZYME ACTIVITY; EXON; FAT INTAKE; GENE CONTROL; HUMAN; LIPOGENESIS; PROTEIN SYNTHESIS; RNA PROCESSING; RNA SPLICING; SIGNAL TRANSDUCTION; TRANSCRIPTION REGULATION;

EID: 4444312418     PISSN: 00223166     EISSN: None     Source Type: Journal    
DOI: 10.1093/jn/134.9.2437s     Document Type: Conference Paper

References (60)

1. Hillgartner, F. B., Salati, L. M. & Goodridge, A. G. (1995) Physiological and molecular mechanisms involved in nutritional regulation of fatty acid synthesis. Physiol. Rev. 75: 47-76.
2. Salati, L. M. & Amir-Ahmady, B. (2001) Dietary regulation of expression of glucose-6-phosphate dehydrogenase. Annu. Rev. Nutr. 21: 121-140.
3. Vulliamy, T., Mason, P. & Luzzatto, L. (1992) The molecular basis of glucose-6-phosphate dehydrogenase deficiency. Trends Genet. 8: 138-143.
4. Ursini, M. V., Parrella, A., Rosa, G., Salzano, S. & Martini, G. (1997) Enhanced expression of glucose-6-phosphate dehydrogenase in human cells sustaining oxidative stress. Biochem. J. 323: 801-806.
5. Pandolfi, P. P., Sonati, F., Rivi, R., Mason, P., Grosveld, F. & Luzzatto, L. (1995) Targeted disruption of the housekeeping gene encoding glucose 6-phosphate dehydrogenase (G6PD): G6PD is dispensable for pentose synthesis but essential for defense against oxidative stress. EMBO J. 14: 5209-5215.
6. Longo, L., Vanegas, O. C., Patel, M., Rosti, V., Li, H., Waka, J., Merghoub, T., Pandolfi, P. P., Notaro, R., Manova, K. & Luzzatto, L. (2002) Maternally transmitted severe glucose 6-phosphate dehydrogenase deficiency is an embryonic lethal. EMBO J. 21: 4229-4239.
7. Filosa, S., Fico, A., Paglialunga, F., Balestrieri, M., Crooke, A., Verde, P., Abrescia, P., Bautista, J. M. & Martini, G. (2003) Failure to increase glucose consumption through the pentose-phosphate pathway results in the death of glucose-6-phosphate dehydrogenase gene-deleted mouse embryonic stem cells subjected to oxidative stress. Biochem. J. 370: 935-943.
8. Luzzatto, L. & Mehta, A. (1989) Glucose-6-phosphate dehydrogenase deficiency. In: The Metabolic Basis of Inherited Disease, 6th ed. (Scriver, C. R., Beaudet, A., Sly, W. & Valle, D., eds.), pp. 2237-2266. McGraw-Hill, New York, NY.
9. Schmitz, G., Hohage, H. & Ullrich, K. (1993) Glucose-6-phosphate: a key compound in glycogenosis I and favism leading to hyper- or hypolipidaemia. Eur. J. Pediatr. 152: S77-S84.
10. Kletzien, R. F., Harris, P. K. & Foellmi, L. A. (1994) Glucose-6-phosphate dehydrogenase: a "housekeeping" enzyme subject to tissue-specific regulation by hormones, nutrients, and oxidant stress. FASEB J. 8: 174-181.
11. Zhang, Z., Apse, K., Pang, J. & Stanton, R. C. (2000) High glucose inhibits glucose 6-phosphate dehydrogenase via cAMP in aortic endothelial cells. J. Biol. Chem. 275: 40042-40047.
12. Gozukara, E. M., Frolich, M. & Holten, D. (1972) The effect of unsaturated fatty acids on the rate of synthesis of rat liver glucose-6-phosphate dehydrogenase. Biochim. Biophys. A. 286: 155-163.
13. Peavy, D. E. & Hansen, R. J. (1975) Immunological titration of rat liver glucose-6-phosphate dehydrogenase from animals fed high and low carbohydrate diets. Biochem. Biophys. Res. Commun. 66: 1106-1111.
14. Winberry, L. & Holten, D. (1977) Rat liver glucose-6-p dehydrogenase. Dietary regulation of the rate of synthesis. J. Biol. Chem. 252: 7796-7801.
15. Wolfe, R. G. & Holten, D. (1978) The effect of dietary fat or cholesterol and cholic acid on the rate of synthesis of rat liver glucose-6-P dehydrogenase. J. Nutr. 108: 1708-1717.
16. Miksicek, R. J. & Towle, H. C. (1982) Changes in the rates of synthesis and messenger RNA levels of hepatic glucose-6-phosphate and 6-phosphogluconate dehydrogenases following induction by diet or thyroid hormone. J. Biol. Chem. 257: 11829-11835.
17. Wolfe, R. G., Nakayama, R. & Holten, D. (1979) Regulation of glucose-6-P dehydrogenase synthesis in rat epididymal fat pads. Biochem. Biophys. Res. Commun. 89: 108-115.
18. Garcia, D. R. & Holten, D. (1975) Inhibition of rat liver glucose-6-phosphate dehydrogenase synthesis by glucagon. J. Biol. Chem. 250: 3960-3965.
19. Morikawa, N., Nakayama, R. & Holten, D. (1984) Dietary induction of glucose-6-phosphate dehydrogenase synthesis. Biochem. Biophys. Res. Commun. 120: 1022-1029.
20. Rudack, D., Chisholm, E. M. & Holten, D. (1971) Rat liver glucose 6-phosphate dehydrogenase. Regulation by carbohydrate diet and insulin. J. Biol. Chem. 246: 1249-1254.
21. Tomlinson, J. E., Nakayama, R. & Holten, D. (1988) Repression of pentose phosphate pathway dehydrogenase synthesis and mRNA by dietary fat in rats. J. Nutr. 118: 408-415.
22. Peavy, D. E. & Hansen, R. J. (1979) Influence of diet on the in vivo turnover of glucose-6-phosphate dehydrogenase in rat liver. Biochim. Biophys. A. 586: 22-30.
23. Hodge, D. L. & Salati, L. M. (1997) Nutritional regulation of the glucose-6-phosphate dehydrogenase gene is mediated by a nuclear posttranscriptional mechanism. Arch. Biochem. Biophys. 348: 303-312.
24. Stabile, L. P., Hodge, D. L., Klautky, S. A. & Salati, L. M. (1996) Posttranscriptional regulation of glucose-6-phosphate dehydrogenase by dietary polyunsaturated fat. Arch. Biochem. Biophys. 332: 269-279.
25. Kletzien, R. F., Prostko, C. R., Stumpo, D. J., McClung, J. K. & Dreher, K. L. (1985) Molecular cloning of DNA sequences complementary to rat liver glucose-6-phosphate dehydrogenase mRNA. Nutritional regulation of mRNA levels. J. Biol. Chem. 260: 5621-5624.
26. Prostko, C. R., Fritz, R. S. & Kletzien, R. F. (1989) Nutritional regulation of hepatic glucose-6-phosphate dehydrogenase. Transient activation of transcription. Biochem. J. 258: 295-299.
27. Stumpo, D. J. & Kletzien, R. F. (1984) Regulation of glucose-6-phosphate dehydrogenase mRNA by insulin and the glucocorticoids in primary cultures of rat hepatocytes. Eur. J. Biochem. 144: 497-502.
28. Miksicek, R. J. & Towle, H. C. (1983) Use of a cloned cDNA sequence to measure changes in 6-phosphogluconate dehydrogenase mRNA levels caused by thyroid hormone and dietary carbohydrate. J. Biol. Chem. 258: 9575-9579.
29. Manos, P., Nakayama, R. & Holten, D. (1991) Regulation of glucose-6-phosphate dehydrogenase synthesis and mRNA abundance in cultured rat hepatocytes. Biochem. J. 276: 245-250.
30. Stabile, L. P., Klautky, S. A., Minor, S. M. & Salati, L. M. (1998) Polyunsaturated fatty acids inhibit the expression of the glucose-6-phosphate dehydrogenase gene in primary rat hepatocytes by a nuclear posttranscriptional mechanism. J. Lipid. Res. 39: 1951-1963.
31. Fukuda, H. & Iritani, N. (1991) Diurnal variations of lipogenic enzyme mRNA quantities in rat liver. Biochim. Biophys. A. 1086: 261-264.
32. Casey, J. L., Hentze, M. W., Koeller, D. M., Caughman, S. W., Rouault, T. A., Klausner, R. D. & Harford, J. B. (1988) Iron-responsive elements: regulatory RNA sequences that control mRNA levels and translation. Science 240: 924-928.
33. Tebbey, P. W., McGowan, K. M., Stephens, J. M., Buttke, T. M. & Pekala, P. H. (1994) Arachidonic acid down-regulates the insulin-dependent glucose transporter gene (GLUT4) in 3T3-L1 adipocytes by inhibiting transcription and enhancing mRNA turnover. J. Biol. Chem. 269: 639-644.
34. Semenkovich, C. F., Coleman, T. & Goforth, R. (1993) Physiologic concentrations of glucose regulate fatty acid synthase activity in HepG2 cells by mediating fatty acid synthase mRNA stability. J. Biol. Chem. 268: 6961-6970.
35. Ciejek, E. M., Nordstrom, J. L., Tsai, M. J. & O'Malley, B. W. (1982) Ribonucleic acid precursors are associated with the chick oviduct nuclear matrix. Biochemistry 21: 4945-4953.
36. Fey, E. G., Krochmalnic, G. & Penman, S. (1986) The nonchromatin substructures of the nucleus: the ribonucleoprotein (RNP)-containing and RNP-depleted matrices analyzed by sequential fractionation and resinless section electron microscopy. J. Cell Biol. 102: 1654-1665.
37. Zeitlin, S., Parent, A., Silverstein, S. & Efstratiadis, A. (1987) Pre-mRNA splicing and the nuclear matrix. Mol. Cell. Biol. 7: 111-120.
38. Amir-Ahmady, B. & Salati, L. M. (2001) Regulation of the processing of glucose-6-phosphate dehydrogenase mRNA by nutritional status. J. Biol. Chem. 276: 10514-10523.
39. Antoniou, M., Geraghty, F., Hurst, J. & Grosveld, F. (1998) Efficient 3′-end formation of human beta-globin mRNA in vivo requires sequences within the last intron but occurs independently of the splicing reaction. Nucleic Acids Res. 26: 721-729.
40. Custodio, N., Carmo-Fonseca, M., Geraghty, F., Pereira, H. S., Grosveld, F. & Antoniou, M. (1999) Inefficient processing impairs release of RNA from the site of transcription. EMBO J. 18: 2855-2866.
41. Hilleren, P., McCarthy, T., Rosbash, M., Parker, R. & Jensen, T. H. (2001) Quality control of mRNA 3′-end processing is linked to the nuclear exosome. Nature 413: 538-542.
42. Burmeister, L. A. & Mariash, C. N. (1991) Dietary sucrose enhances processing of mRNA-S14 nuclear precursor. J. Biol. Chem. 266: 22905-22911.
43. Hamblin, P. S., Ozawa, Y., Jefferds, A. & Mariash, C. N. (1989) Interaction between fructose and glucose on the regulation of the nuclear precursor for mRNA-S14. J. Biol. Chem. 264: 21646-21651.
44. Ge, H. & Manley, J. L. (1990) A protein factor, ASF, controls cell-specific alternative splicing of SV40 early pre-mRNA in vitro. Cell 62: 25-34.
45. Krainer, A. R., Conway, G. C. & Kozak, D. (1990) Purification and characterization of pre-mRNA splicing factor SF2 from HeLa cells. Genes Dev. 4: 1158-1171.
46. Xiao, S. H. & Manley, J. L. (1997) Phosphorylation of the ASF/SF2 RS domain affects both protein-protein and protein-RNA interactions and is necessary for splicing. Genes Dev. 11: 334-344.
47. Yeakley, J. M., Tronchere, H., Olesen, J., Dyck, J. A., Wang, H. Y. & Fu, X. D. (1999) Phosphorylation regulates in vivo interaction and molecular targeting of serine/arginine-rich pre-mRNA splicing factors. J. Cell Biol. 145: 447-455.
48. Huang, S. & Spector, D. L. (1996) Dynamic organization of pre-mRNA splicing factors. J. Cell Biochem. 62: 191-197.
49. Misteli, T. (1999) RNA splicing: What has phosphorylation got to do with it? Curr. Biol. 9: R198-R200.
50. Sacco-Bubulya, P. & Spector, D. L. (2002) Disassembly of interchromatin granule clusters alters the coordination of transcription and pre-mRNA splicing. J. Cell Biol. 156: 425-436.
51. Prasad, J., Colwill, K., Pawson, T. & Manley, J. L. (1999) The protein kinase Ctk/Sty directly modulates SR protein activity: both hyper- and hypophosphorylation inhibit splicing. Mol. Cell. Biol. 19: 6991-7000.
52. Ke, Y., Ash, J. & Johnson, L. F. (1996) Splicing signals are required for S-phase regulation of the mouse thymidylate synthase gene. Mol. Cell. Biol. 16: 376-383.
53. Osman, F., Jarrous, N., Ben-Asouli, Y. & Kaempfer, R. (1999) A cis-acting element in the 3′-untranslated region of human TNF-alpha mRNA renders splicing dependent on the activation of protein kinase PKR. Genes Dev. 13: 3280-3293.
54. Tao, H., Szeszel-Fedorowicz, W., Amir-Ahmady, B., Gibson, M. A., Stabile, L. P. & Salati, L. M. (2002) Inhibition of the splicing of glucose-6-phosphate dehydrogenase precursor mRNA by polyunsaturated fatty acids. J. Biol. Chem. 277: 31270-31278.
55. Kim, V. N. & Dreyfus, G. (2001) Nuclear mRNA binding proteins couple pre-mRNA splicing and post-splicing events. Mol. Cell 12: 1-10.
56. Le Hir, H., Gatfield, D., Izaurralde, E. & Moore, M. J. (2001) The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay. EMBO J. 20: 4987-4997.
57. Luo, M. J. & Reed, R. (1999) Splicing is required for rapid and efficient mRNA export in metazoans. Proc. Natl. Acad. Sci. U.S.A. 96: 14937-14942.
58. Mitchell, P. & Tollervey, D. (2000) Musing on the structural organization of the exosome complex. Nat. Struct. Biol. 7: 843-846.
59. Muhlemann, O., Mock-Casagrande, C. S., Wang, J., Li, S., Custodio, N., Carmo-Fonseca, M., Wilkinson, M. F. & Moore, M. J. (2001) Precursor RNAs harboring nonsense codons accumulate near the site of transcription. Mol. Cell 8: 33-43.
60. Wang, J., Vock, V. M., Li, S., Olivas, O. R. & Wilkinson, M. F. (2002) A quality-control pathway that downregulates aberrant TCR transcripts by a mechanism requiring UPF2 and translation. J. Biol. Chem. 277: 18489-18493.