LiveBench-2: Large-scale automated evaluation of protein structure prediction servers

Proteins: Structure, Function and Genetics

Volumn 45, Issue SUPPL. 5, 2001, Pages 184-191

  Bujnicki, Janusz M ^a   Elofsson, Arne ^b   Fischer, Daniel ^c   Rychlewski, Leszek ^d  

^a INTERNATIONAL INSTITUTE OF MOLECULAR AND CELL BIOLOGY   (Poland)

^b STOCKHOLM UNIVERSITY   (Sweden)

^c BEN GURION UNIVERSITY OF THE NEGEV   (Israel)

^d BIOINFOBANK INSTITUTE   (Poland)

Author keywords

Automated protein structure prediction; Benchmarking; LiveBench; Meta server; ToolShop

Indexed keywords

ARTICLE; AUTOMATION; MOLECULAR RECOGNITION; PREDICTION; PRIORITY JOURNAL; PROTEIN FOLDING; PROTEIN STRUCTURE; STRUCTURE ANALYSIS; COMPUTER; COMPUTER PROGRAM; EVALUATION; PROTEIN CONFORMATION; PROTEIN SECONDARY STRUCTURE; PROTEIN TERTIARY STRUCTURE; SENSITIVITY AND SPECIFICITY; SEQUENCE ANALYSIS;

AUTOMATION; COMPUTERS; EVALUATION STUDIES; PROTEIN CONFORMATION; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; SENSITIVITY AND SPECIFICITY; SEQUENCE ANALYSIS, PROTEIN; SOFTWARE;

EID: 0035698724     PISSN: 08873585     EISSN: None     Source Type: Journal    
DOI: 10.1002/prot.10039     Document Type: Article

References (17)

1. LiveBench-1: Continuous benchmarking of protein structure prediction servers
2. The Protein Data Bank: A computer-based archival file for macromolecular structures
3. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
4. Comparison of sequence profiles: Strategies for structural predictions using sequence information
5. Enhanced genome annotation using structural profiles in the program 3D-PSSM
6. GenTHREADER: An efficient and reliable protein fold recognition method for genomic sequences
7. Hybrid fold recognition: Combining sequence derived properties with evolutionary information
8. Predicting protein structure using only sequence information
9. Fold recognition and accurate query-template alignment by a combination of PSI-BLAST and threading
10. Pcons: A neural-network-based consensus predictor that improves fold recognition
11. MaxSub: An automated measure to assess the quality of protein structure prediction
12. SAWTED: Structure assignment with text description - Enhanced detection of remote homologues with automated SWISS-PROT annotation comparisons
13. Critical assessment of methods of protein structure prediction (CASP): Round III
14. CAFASP-1: Critical assessment of fully automated structure prediction methods
15. Regularities in interaction patterns of globular proteins