RNase-sensitive DNA modification(s) initiates S. pombe mating-type switching

Genes and Development

Volumn 18, Issue 7, 2004, Pages 794-804

  Vengrova, Sonya ^a   Dalgaard, Jacob Z ^a  

^a MARIE CURIE RESEARCH INSTITUTE   (United Kingdom)

Author keywords

DNA modification; Imprint; Mating type switching; Replication pausing; Schizosaccharomyces pombe

Indexed keywords

DNA; RIBONUCLEASE; RNA;

ARTICLE; DNA MODIFICATION; DNA REPLICATION; DNA STRAND; GENE CASSETTE; MATING TYPE; PRIORITY JOURNAL; SCHIZOSACCHAROMYCES POMBE; YEAST;

BASE SEQUENCE; BLOTTING, SOUTHERN; CELL CYCLE PROTEINS; CHROMOSOMAL PROTEINS, NON-HISTONE; CHROMOSOMES, FUNGAL; DNA REPLICATION; DNA, FUNGAL; DNA-BINDING PROTEINS; GENES, FUNGAL; GENES, MATING TYPE, FUNGAL; GENOMIC IMPRINTING; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; MUTATION; NEOPLASM PROTEINS; NUCLEAR PROTEINS; REPLICATION ORIGIN; RIBONUCLEASES; RNA, FUNGAL; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SCHIZOSACCHAROMYCES; SCHIZOSACCHAROMYCES POMBE PROTEINS; SEQUENCE HOMOLOGY, NUCLEIC ACID; TRANS-ACTIVATORS; TRANSCRIPTION FACTORS;

SCHIZOSACCHAROMYCES; SCHIZOSACCHAROMYCES POMBE;

EID: 1842733112     PISSN: 08909369     EISSN: None     Source Type: Journal    
DOI: 10.1101/gad.289404     Document Type: Article

References (47)

1. Arcangioli, B. 1998. A site- and strand-specific DNA break confers asymmetric switching potential in fission yeast. EMBO J. 17: 4503-4510.
2. Arcangioli, B. and de Lahondes, R. 2000. Fission yeast switches mating type by a replication-recombination coupled process. EMBO J. 19: 1389-1396.
3. Arcangioli, B. and Klar, AJ. 1991. A novel switch-activating site (SAS1) and its cognate binding factor (SAP1) required for efficient mat1 switching in Schizosaccharomyces pombe. EMBO J. 10: 3025-3032.
4. Beach, D.H. 1983. Cell type switching by DNA transposition in fission yeast. Nature 305: 682-687.
5. Beach, D.H. and Klar, A.J. 1984. Rearrangements of the transposable mating-type cassettes of fission yeast. EMBO J. 3: 603-610.
6. Brewer, B.J. and Fangman, W.L. 1987. The localization of replication origins on ARS plasmids in S. cerevisiae. Cell 51: 463-471.
7. Courcelle, J., Donaldson, J.R., Chow, K.H., and Courcelle, C.T. 2003. DNA damage-induced replication fork regression and processing in Escherichia coli. Science 299: 1064-1067.
8. Dalgaard, J.Z. and Klar, A.J. 1999. Orientation of DNA replication establishes mating-type switching pattern in S. pombe. Nature 400: 181-184.
9. -. 2000. swi1 and swi3 perform imprinting, pausing, and termination of DNA replication in S. pombe. Cell 102: 745-751.
10. -. 2001a. A DNA replication-arrest site RTS1 regulates imprinting by determining the direction of replication at mat1 in S. pombe. Genes & Dev. 15: 2060-2068.
11. -. 2001b. Does S. pombe exploit the intrinsic asymmetry of DNA synthesis to imprint daughter cells for mating-type switching? Trends Genet. 17: 153-157.
12. Di Noia, J. and Neuberger, M.S. 2002. Altering the pathway of immunoglobulin hypermutation by inhibiting uracil-DNA glycosylase. Nature 419: 43-48.
13. Doe, C.L., Dixon, J., Osman, F., and Whitby, M.C. 2000. Partial suppression of the fission yeast rqh1 (-) phenotype by expression of a bacterial Holliday junction resolvase. EMBO J. 19: 2751-2762.
14. Doe, C.L., Ahn, J.S., Dixon, J., and Whitby, M.C. 2002. Mus81-Eme1 and Rqh1 involvement in processing stalled and collapsed replication forks. J. Biol. Chem. 277: 32753-32759.
15. Egel, R. and Eie, B. 1987. Cell lineage asymmetry for Schizosaccharomyces pombe: Unilateral transmission of a high-frequency state of mating-type switching in diploid pedigrees. Curr. Genet. 12: 429-433.
16. Egel, R., Beach, D.H., and Klar, A.J. 1984. Genes required for initiation and resolution steps of mating-type switching in fission yeast. Proc. Natl. Acad. Sci. 81: 3481-3485.
17. Foss, E.J. 2001. Tof1p regulates DNA damage responses during S phase in Saccharomyces cerevisiae. Genetics 157: 567-577.
18. Gellert, M. 2002. V(D)J recombination: RAG proteins, repair factors, and regulation. Annu. Rev. Biochem. 71: 101-132.
19. Gerbi, S.A. and Bielinsky, A.K. 1997. Replication initiation point mapping. Methods 13: 271-280.
20. Gruber, M., Wellinger, R.E., and Sogo, J.M. 2000. Architecture of the replication fork stalled at the 3′ end of yeast ribosomal genes. Mol. Cell. Biol. 20: 5777-5787.
21. Haber, J.E. 1998. Mating-type gene switching in Saccharomyces cerevisiae. Annu. Rev. Genet. 32: 561-599.
22. Huberman, J.A., Spotila, L.D., Nawotka, K.A., el-Assouli, S.M., and Davis, L.R. 1987. The in vivo replication origin of the yeast 2 microns plasmid. Cell 51: 473-481.
23. Kaykov, A., Holmes, A.M., and Arcangioli, B. 2004. Formation, maintenance and consequences of the imprint at the mating-type locus in fission yeast. EMBO J 123: 930-938.
24. Kelly, M., Burke, J., Smith, M., Klar, A., and Beach, D. 1988. Four mating-type genes control sexual differentiation in the fission yeast. EMBO J. 7: 1537-1547.
25. Kiger Jr., J.A. and Sinsheimer, R.L. 1969. Vegetative lambda DNA. IV. Fractionation of replicating lambda DNA on benzoylated-naphthoylated DEAE cellulose. J. Mol. Biol. 40: 467-490.
26. Klar, A.J. 1987. Differentiated parental DNA strands confer developmental asymmetry on daughter cells in fission yeast. Nature 326: 466-470.
27. Klar, A.J. and Bonaduce, M.J. 1993. The mechanism of fission yeast mating-type interconversion: Evidence for two types of epigenetically inherited chromosomal imprinted events. Cold Spring Harb. Symp. Quant. Biol. 58: 457-465.
28. Klar, A.J. and Miglio, L.M. 1986. Initiation of meiotic recombination by double-strand DNA breaks in S. pombe. Cell 46: 725-731.
29. Kostriken, R., Strathern, J.N., Klar, A.J., Hicks, J.B., and Heffron, F. 1983. A site-specific endonuclease essential for mating-type switching in Saccharomyces cerevisiae. Cell 35: 167-174.
30. Lakin-Thomas, P.L. 2000. Circadian rhythms: New functions for old clock genes. Trends Genet. 16: 135-142.
31. Maurer, D.J., O'Callaghan, B.L., and Livingston, D.M. 1998. Mapping the polarity of changes that occur in interrupted CAG repeat tracts in yeast. Mol. Cell. Biol. 18: 4597-4604.
32. McBlane, J.F., van Gent, D.C., Ramsden, D.A., Romeo, C., Cuomo, C.A., Gellert, M., and Oettinger, M.A. 1995. Cleavage at a V(D)J recombination signal requires only RAG1 and RAG2 proteins and occurs in two steps. Cell 83: 387-395.
33. Michel, B., Flores, M.J., Viguera, E., Grompone, G., Seigneur, M., and Bidnenko, V. 2001. Rescue of arrested replication forks by homologous recombination. Proc. Natl. Acad. Sci. 98: 8181-8188.
34. Miyata, H. and Miyata, M. 1981. Mode of conjugation in homothallic cells of Schizosaccharomyces pombe. J. Gen. Appl. Microbiol. 27: 365-371.
35. Moreno, S., Klar, A., and Nurse, P. 1991. Molecular genetic analysis of fission yeast Schizosaccharomyces pombe. Methods Enzymol. 194: 795-823.
36. Murray, J.M., Lindsay, H.D., Munday, C.A., and Carr, A.M. 1997. Role of Schizosaccharomyces pombe RecQ homolog, recombination, and checkpoint genes in UV damage tolerance. Mol. Cell. Biol. 17: 6868-6875.
37. Nielsen, O. and Egel, R. 1989. Mapping the double-strand breaks at the mating-type locus in fission yeast by genomic sequencing. EMBO J. 8: 269-276.
38. Noguchi, E., Noguchi, C., Du, L.L., and Russell, P. 2003. Swi1 prevents replication fork collapse and controls checkpoint kinase Cdsl. Mol. Cell. Biol. 23: 7861-7874.
39. Park, H. and Sternglanz, R. 1999. Identification and characterization of the genes for two topoisomerase I-interacting proteins from Saccharomyces cerevisiae. Yeast 15: 35-41.
40. Pelletier, R., Krasilnikova, M.M., Samadashwily, G.M., Lahue, R., and Mirkin, S.M. 2003. Replication and expansion of trinucleotide repeats in yeast. Mol. Cell. Biol. 23: 1349-1357.
41. Rada, C., Williams, G.T., Nilsen, H., Barnes, D.E., Lindahl, T., and Neuberger, M.S. 2002. Immunoglobulin isotype switching is inhibited and somatic hypermutation perturbed in UNG-deficient mice. Curr. Biol. 12: 1748-1755.
42. Ruven, H.J., Seelen, C.M., Lohman, P.H., Mullenders, L.H., and van Zeeland, A.A. 1994. Efficient synthesis of 32P-labeled single-stranded DNA probes using linear PCR; application of the method for analysis of strand-specific DNA repair. Mutat. Res. 315: 189-195.
43. Singh, J. and Klar, A.J. 1993. DNA polymerase-alpha is essential for mating-type switching in fission yeast. Nature 361: 271-273.
44. Sogo, J.M., Lopes, M., and Foiani, M. 2002. Fork reversal and ssDNA accumulation at stalled replication forks owing to checkpoint defects. Science 297: 599-602.
45. Styrkarsdottir, U., Egel, R., and Nielsen, O. 1993. The smt-0 mutation which abolishes mating-type switching in fission yeast is a deletion. Curr. Genet. 23: 184-186.
46. Waga, S. and Stillman, B. 1998. The DNA replication fork in eukaryotic cells. Annu. Rev. Biochem. 67: 721-751.
47. Yang, M.Y., Bowmaker, M., Reyes, A., Vergani, L., Angeli, P., Gringeri, E., Jacobs, H.T., and Holt, I.J. 2002. Biased incorporation of ribonucleotides on the mitochondrial L-strand accounts for apparent strand-asymmetric DNA replication. Cell 111: 495-505.