-
1
-
-
0020337793
-
Identification by RNA-protein cross-linking of ribosomal proteins located at the interface between the small and the large subunits of mammalian ribosomes
-
6201358
-
Identification by RNA-protein cross-linking of ribosomal proteins located at the interface between the small and the large subunits of mammalian ribosomes. Nygard Nika, EMBO J 1982 1 357 362 6201358
-
(1982)
EMBO J
, vol.1
, pp. 357-362
-
-
Nygard, N.1
-
3
-
-
0025633118
-
Homologous ribosomal protein genes on the human X and Y chromosomes: Escape from X inactivation and possible implications for Turner syndrome
-
10.1016/0092-8674(90)90416-C. 2124517
-
Homologous ribosomal protein genes on the human X and Y chromosomes: escape from X inactivation and possible implications for Turner syndrome. EM Fisher P Beer-Romero LG Brown A Ridley JA McNeil JB Lawrence HF Willard FR Bieber DC Page, Cell 1990 63 1205 1218 10.1016/0092-8674(90)90416-C 2124517
-
(1990)
Cell
, vol.63
, pp. 1205-1218
-
-
Fisher, E.M.1
Beer-Romero, P.2
Brown, L.G.3
Ridley, A.4
McNeil, J.A.5
Lawrence, J.B.6
Willard, H.F.7
Bieber, F.R.8
Page, D.C.9
-
4
-
-
0030023276
-
Relationship between the monosomy X phenotype and Y linked ribosomal protein S4 (Rps4) in several species of mammals: A molecular evolutionary analysis of Rps4 homologs
-
10.1006/geno.1996.0007. 8808278
-
Relationship between the monosomy X phenotype and Y linked ribosomal protein S4 (Rps4) in several species of mammals: a molecular evolutionary analysis of Rps4 homologs. K Omoe A Endo, Genomics 1996 31 44 50 10.1006/geno.1996.0007 8808278
-
(1996)
Genomics
, vol.31
, pp. 44-50
-
-
Omoe, K.1
Endo, A.2
-
5
-
-
0032552194
-
A proposed path by which genes common to mammalian X and Y chromosomes evolve to become X inactivated
-
10.1038/29522. 9723615
-
A proposed path by which genes common to mammalian X and Y chromosomes evolve to become X inactivated. K Jegalian DC Page, Nature 1998 394 776 780 10.1038/29522 9723615
-
(1998)
Nature
, vol.394
, pp. 776-780
-
-
Jegalian, K.1
Page, D.C.2
-
6
-
-
0037967242
-
The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes
-
10.1038/nature01722. 12815422
-
The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. H Skaletsky T Kuroda-Kawaguchi PJ Minx (40 co-authors), Nature 2003 423 825 837 10.1038/nature01722 12815422
-
(2003)
Nature
, vol.423
, pp. 825-837
-
-
Skaletsky, H.1
Kuroda-Kawaguchi, T.2
Minx, P.J.3
-
7
-
-
33846039019
-
Ensembl 2007
-
17148474. 10.1093/nar/gkl996
-
Ensembl 2007. TJP Hubbard BL Aken K Beal (58 co-authors), Nucleic Acids Res 2007 35 Database D610 7 17148474 10.1093/nar/gkl996
-
(2007)
Nucleic Acids Res
, vol.35
, Issue.DATABASE
, pp. 610-7
-
-
Hubbard, T.J.P.1
Aken, B.L.2
Beal, K.3
-
8
-
-
0000732112
-
Translational control of ribosomal protein mRNAs in eukaryotes
-
Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press Hershey JWB, Mathews MB, Sonenberg N
-
Translational control of ribosomal protein mRNAs in eukaryotes. O Meyuhas D Avni S Shama, Translational Control Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press, Hershey JWB, Mathews MB, Sonenberg N, 1996 363 388
-
(1996)
Translational Control
, pp. 363-388
-
-
Meyuhas, O.1
Avni, D.2
Shama, S.3
-
9
-
-
0027161001
-
Functional equivalence of human X and Y-encoded isoforms of ribosomal protein S4 consistent with a role in Turner syndrome
-
10.1038/ng0793-268. 8358435
-
Functional equivalence of human X and Y-encoded isoforms of ribosomal protein S4 consistent with a role in Turner syndrome. M Watanabe AR Zinn DC Page T Nishimoto, Nat Genet 1993 4 268 271 10.1038/ng0793-268 8358435
-
(1993)
Nat Genet
, vol.4
, pp. 268-271
-
-
Watanabe, M.1
Zinn, A.R.2
Page, D.C.3
Nishimoto, T.4
-
10
-
-
0028231417
-
Structure and function of ribosomal protein S4 genes on the human and mouse sex chromosomes
-
8139551
-
Structure and function of ribosomal protein S4 genes on the human and mouse sex chromosomes. AR Zinn RK Alagappan LG Brown I Wool DC Page, Mol Cell Biol 1994 14 2485 2492 8139551
-
(1994)
Mol Cell Biol
, vol.14
, pp. 2485-2492
-
-
Zinn, A.R.1
Alagappan, R.K.2
Brown, L.G.3
Wool, I.4
Page, D.C.5
-
11
-
-
0031613939
-
The Minute genes in Drosophila and their molecular functions
-
9677706
-
The Minute genes in Drosophila and their molecular functions. A Lambertsson, Adv Genet 1998 38 69 134 9677706
-
(1998)
Adv Genet
, vol.38
, pp. 69-134
-
-
Lambertsson, A.1
-
12
-
-
0029974453
-
Extraribosomal functions of ribosomal proteins
-
8871397
-
Extraribosomal functions of ribosomal proteins. IG Wool, TIBS 1996 21 164 165 8871397
-
(1996)
TIBS
, vol.21
, pp. 164-165
-
-
Wool, I.G.1
-
13
-
-
0036125672
-
The human ribosomal protein genes: Sequencing and comparative analysis of 73 genes
-
11875025. 10.1101/gr.214202
-
The human ribosomal protein genes: sequencing and comparative analysis of 73 genes. M Yoshihama T Uechi S Asakawa K Kawasaki S Kato S Higa N Maeda S Minoshima T Tanaka N Shimizu N Kenmochi, Genome Res 2002 12 379 390 11875025 10.1101/gr.214202
-
(2002)
Genome Res
, vol.12
, pp. 379-390
-
-
Yoshihama, M.1
Uechi, T.2
Asakawa, S.3
Kawasaki, K.4
Kato, S.5
Higa, S.6
Maeda, N.7
Minoshima, S.8
Tanaka, T.9
Shimizu, N.10
Kenmochi, N.11
-
15
-
-
0347361692
-
Selective constraints on intron evolution in Drosophila
-
14704170
-
Selective constraints on intron evolution in Drosophila. J Parsch, Genetics 2003 165 1843 1851 14704170
-
(2003)
Genetics
, vol.165
, pp. 1843-1851
-
-
Parsch, J.1
-
16
-
-
0032088632
-
Toward a phylogenetic classification of Primates based on DNA evidence complemented by fossil evidence
-
10.1006/mpev.1998.0495. 9668008
-
Toward a phylogenetic classification of Primates based on DNA evidence complemented by fossil evidence. M Goodman CA Porter J Czelusniak SL Page H Schneider J Shoshani G Gunnell CP Groves, Mol Phylogenet Evol 1998 9 585 598 10.1006/mpev.1998.0495 9668008
-
(1998)
Mol Phylogenet Evol
, vol.9
, pp. 585-598
-
-
Goodman, M.1
Porter, C.A.2
Czelusniak, J.3
Page, S.L.4
Schneider, H.5
Shoshani, J.6
Gunnell, G.7
Groves, C.P.8
-
17
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
9367129
-
PAML: a program package for phylogenetic analysis by maximum likelihood. Z Yang, Comput Appl Biosci 1997 13 555 556 9367129
-
(1997)
Comput Appl Biosci
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
18
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing. Y Benjamini Y Hochberg, J Royal Stat Soc B 1995 57 289 300
-
(1995)
J Royal Stat Soc B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
19
-
-
0031972161
-
Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene
-
9539414
-
Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene. R Nielsen Z Yang, Genetics 1998 148 929 936 9539414
-
(1998)
Genetics
, vol.148
, pp. 929-936
-
-
Nielsen, R.1
Yang, Z.2
-
20
-
-
0034097381
-
Codon substitution models for heterogeneous selection pressure at amino acid sites
-
10790415
-
Codon substitution models for heterogeneous selection pressure at amino acid sites. Z Yang R Nielsen N Goldman AM Pedersen, Genetics 2000 155 431 449 10790415
-
(2000)
Genetics
, vol.155
, pp. 431-449
-
-
Yang, Z.1
Nielsen, R.2
Goldman, N.3
Pedersen, A.M.4
-
21
-
-
0036270185
-
Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages
-
12032247
-
Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages. Z Yang R Nielsen, Mol Biol Evol 2002 19 908 917 12032247
-
(2002)
Mol Biol Evol
, vol.19
, pp. 908-917
-
-
Yang, Z.1
Nielsen, R.2
-
22
-
-
33644761962
-
Sex chromosome specialization and degeneration in mammals
-
10.1016/j.cell.2006.02.024. 16530039
-
Sex chromosome specialization and degeneration in mammals. JAM Graves, Cell 2006 124 901 914 10.1016/j.cell.2006.02.024 16530039
-
(2006)
Cell
, vol.124
, pp. 901-914
-
-
Graves, J.A.M.1
-
23
-
-
33646513743
-
How the gene content of human sex chromosomes evolved
-
10.1016/j.gde.2006.04.007
-
How the gene content of human sex chromosomes evolved. JAM Graves E Koina N Sankovic, Curr Opinion Genet Develop 2006 16 219 224 10.1016/j.gde.2006.04. 007
-
(2006)
Curr Opinion Genet Develop
, vol.16
, pp. 219-224
-
-
Graves, J.A.M.1
Koina, E.2
Sankovic, N.3
-
24
-
-
0037115828
-
Functional second genes generated by retrotransposition of the X-linked ribosomal protein genes
-
12490704. 10.1093/nar/gkf696
-
Functional second genes generated by retrotransposition of the X-linked ribosomal protein genes. T Uechi N Maeda T Tanaka N Kenmochi, Nucleic Acids Res 2002 30 5369 5375 12490704 10.1093/nar/gkf696
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 5369-5375
-
-
Uechi, T.1
Maeda, N.2
Tanaka, T.3
Kenmochi, N.4
-
25
-
-
0037270015
-
The evolutionary demography of duplicate genes
-
10.1023/A:1022696612931. 12836683
-
The evolutionary demography of duplicate genes. M Lynch JS Conery, J Struct Funct Genomics 2003 3 35 44 10.1023/A:1022696612931 12836683
-
(2003)
J Struct Funct Genomics
, vol.3
, pp. 35-44
-
-
Lynch, M.1
Conery, J.S.2
-
27
-
-
0018344224
-
Evolution of the differential regulation of duplicate genes after polyploidization
-
10.1007/BF01732026. 448746
-
Evolution of the differential regulation of duplicate genes after polyploidization. SD Ferris GS Whitt, J Mol Evol 1979 12 267 317 10.1007/BF01732026 448746
-
(1979)
J Mol Evol
, vol.12
, pp. 267-317
-
-
Ferris, S.D.1
Whitt, G.S.2
-
28
-
-
33144464980
-
Role of positive selection in the retention of duplicate genes in mammalian genomes
-
16461903. 10.1073/pnas.0510388103
-
Role of positive selection in the retention of duplicate genes in mammalian genomes. SH Shiu JK Byrnes R Pan P Zhang WH Li, Proc Natl Acad Sci USA 2006 103 2232 2236 16461903 10.1073/pnas.0510388103
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 2232-2236
-
-
Shiu, S.H.1
Byrnes, J.K.2
Pan, R.3
Zhang, P.4
Li, W.H.5
-
29
-
-
0034486404
-
Do the constraints of human speciation cause expression of the same set of genes in brain, testis, and placenta?
-
10.1159/000056861. 11173873
-
Do the constraints of human speciation cause expression of the same set of genes in brain, testis, and placenta? M Wilda D Bächner U Zechner H Kehrer-Sawatzki W Vogel H Hameister, Cytogenet Cell Genet 2000 91 300 302 10.1159/000056861 11173873
-
(2000)
Cytogenet Cell Genet
, vol.91
, pp. 300-302
-
-
Wilda, M.1
Bächner, D.2
Zechner, U.3
Kehrer-Sawatzki, H.4
Vogel, W.5
Hameister, H.6
-
30
-
-
0030296854
-
KOW: A novel motif linking a bacterial transcription factor with ribosomal proteins
-
10.1016/S0968-0004(96)30036-4. 8987397
-
KOW: a novel motif linking a bacterial transcription factor with ribosomal proteins. NC Kyrpides CR Woese CA Ouzounis, Trends Biochem Sci 1998 21 425 426 10.1016/S0968-0004(96)30036-4 8987397
-
(1998)
Trends Biochem Sci
, vol.21
, pp. 425-426
-
-
Kyrpides, N.C.1
Woese, C.R.2
Ouzounis, C.A.3
-
31
-
-
0042123550
-
Detection of sperm in men with Y chromosome microdeletions of the AZFa, AZFb and AZFc regions
-
10.1093/humrep/deg348. 12871878
-
Detection of sperm in men with Y chromosome microdeletions of the AZFa, AZFb and AZFc regions. CV Hopps A Mielnik M Goldstein GD Palermo Z Rosenwaks PN Schlegel, Hum Reprod 2003 18 1660 1665 10.1093/humrep/deg348 12871878
-
(2003)
Hum Reprod
, vol.18
, pp. 1660-1665
-
-
Hopps, C.V.1
Mielnik, A.2
Goldstein, M.3
Palermo, G.D.4
Rosenwaks, Z.5
Schlegel, P.N.6
-
32
-
-
20444430245
-
A scan for positively selected genes in the genomes of humans and chimpanzees
-
15869325. 10.1371/journal.pbio.0030170
-
A scan for positively selected genes in the genomes of humans and chimpanzees. R Nielsen C Bustamante AG Clark S Glanowski TB Sackton MJ Hubisz A Fledel-Alon DM Tanenbaum D Civello TJ White J J Sninsky MD Adams M Cargill, PLoS Biol 2005 3 e170 15869325 10.1371/journal.pbio.0030170
-
(2005)
PLoS Biol
, vol.3
, pp. 170
-
-
Nielsen, R.1
Bustamante, C.2
Clark, A.G.3
Glanowski, S.4
Sackton, T.B.5
Hubisz, M.J.6
Fledel-Alon, A.7
Tanenbaum, D.M.8
Civello, D.9
White, T.J.10
Sninsky J, J.11
Adams, M.D.12
Cargill, M.13
-
33
-
-
33646244720
-
Positive selection, relaxation, and acceleration in the evolution of the human and chimp genome
-
16683019. 10.1371/journal.pcbi.0020038
-
Positive selection, relaxation, and acceleration in the evolution of the human and chimp genome. L Arbiza J Dopazo H Dopazo, PLoS Comput Biol 2006 2 e38 16683019 10.1371/journal.pcbi.0020038
-
(2006)
PLoS Comput Biol
, vol.2
, pp. 38
-
-
Arbiza, L.1
Dopazo, J.2
Dopazo, H.3
-
34
-
-
0004239562
-
-
Repeatmasker. http://www.repeatmasker.org
-
Repeatmasker
-
-
-
35
-
-
0002051540
-
BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
-
BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. TA Hall, Nucl Acids Symp Ser 1999 41 95 98
-
(1999)
Nucl Acids Symp Ser
, vol.41
, pp. 95-98
-
-
Hall, T.A.1
-
36
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
7984417. 10.1093/nar/22.22.4673
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. JD Thompson DG Higgins TJ Gibson, Nucleic Acids Res 1994 22 4673 4680 7984417 10.1093/nar/22.22.4673
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
37
-
-
0032945593
-
DIALIGN 2: Improvement of the segment-to-segment approach to multiple sequence alignment
-
10.1093/bioinformatics/15.3.211. 10222408
-
DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment. B Morgenstern, Bioinformatics 1999 15 211 218 10.1093/bioinformatics/15.3.211 10222408
-
(1999)
Bioinformatics
, vol.15
, pp. 211-218
-
-
Morgenstern, B.1
-
38
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
10742046
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. J Castresana, Mol Biol Evol 2000 17 540 552 10742046
-
(2000)
Mol Biol Evol
, vol.17
, pp. 540-552
-
-
Castresana, J.1
-
39
-
-
0347513220
-
DnaSP, DNA polymorphism analyses by the coalescent and other methods
-
10.1093/bioinformatics/btg359. 14668244
-
DnaSP, DNA polymorphism analyses by the coalescent and other methods. J Rozas JC Sánchez-Delbarrio X Messeguer R Rozas, Bioinformatics 2003 19 2496 2497 10.1093/bioinformatics/btg359 14668244
-
(2003)
Bioinformatics
, vol.19
, pp. 2496-2497
-
-
Rozas, J.1
Sánchez-Delbarrio, J.C.2
Messeguer, X.3
Rozas, R.4
-
40
-
-
0031773680
-
Modeltest: Testing the model of DNA substitution
-
10.1093/bioinformatics/14.9.817. 9918953
-
Modeltest: testing the model of DNA substitution. D Posada KA Crandall, Bioinformatics 1998 14 817 818 10.1093/bioinformatics/14.9.817 9918953
-
(1998)
Bioinformatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
-
41
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
3447015
-
The neighbor-joining method: a new method for reconstructing phylogenetic trees. N Saitou M Nei, Mol Biol Evol 1987 4 406 425 3447015
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
42
-
-
0004248459
-
PAUP*: Phylogenetic analysis using parsimony (* and other methods). Version 4.0b10
-
2002
-
PAUP*: phylogenetic analysis using parsimony (* and other methods). Version 4.0b10. DL Swofford, Sunderland (MA): Sinauer Associates 2002
-
Sunderland (MA): Sinauer Associates
-
-
Swofford, D.L.1
-
43
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
10.2307/2408678
-
Confidence limits on phylogenies: An approach using the bootstrap. J Felsenstein, Evolution 1985 39 783 791 10.2307/2408678
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
44
-
-
0034129663
-
RRTree: Relative-rate tests between groups of sequences on a phylogenetic tree
-
10.1093/bioinformatics/16.3.296. 10869026
-
RRTree: Relative-rate tests between groups of sequences on a phylogenetic tree. M Robinson-Rechavi D Huchon, Bioinformatics 2000 16 296 297 10.1093/bioinformatics/16.3.296 10869026
-
(2000)
Bioinformatics
, vol.16
, pp. 296-297
-
-
Robinson-Rechavi, M.1
Huchon, D.2
-
45
-
-
0030203863
-
TREEVIEW: An application to display phylogenetic trees on personal computers
-
8902363
-
TREEVIEW: An application to display phylogenetic trees on personal computers. RDM Page, Comput Appl Biosci 1996 12 357 358 8902363
-
(1996)
Comput Appl Biosci
, vol.12
, pp. 357-358
-
-
Page, R.D.M.1
|