-
1
-
-
0032534758
-
Springs and zippers: Coiled coils in SNARE- mediated membrane fusion
-
Harbury, P. A. 1998. Springs and zippers: coiled coils in SNARE- mediated membrane fusion. Structure. 6:1487-1491.
-
(1998)
Structure
, vol.6
, pp. 1487-1491
-
-
Harbury, P.A.1
-
2
-
-
0037459076
-
Membrane fusion
-
Jahn, R., T. Lang, and T. C. Sudhof. 2003. Membrane fusion. Cell. 112: 519-533.
-
(2003)
Cell
, vol.112
, pp. 519-533
-
-
Jahn, R.1
Lang, T.2
Sudhof, T.C.3
-
4
-
-
0032959242
-
Folding intermediates of SNARE complex assembly
-
Fiebig, K., L. Rice, E. Pollock, and A. Brunger. 1999. Folding intermediates of SNARE complex assembly. Nat. Struct. Biol. 6:117-123.
-
(1999)
Nat. Struct. Biol
, vol.6
, pp. 117-123
-
-
Fiebig, K.1
Rice, L.2
Pollock, E.3
Brunger, A.4
-
6
-
-
0030735370
-
Structural changes are associated with soluble n-ethylmaleimide-sen-sitive fusion protein attachment protein receptor complex formation
-
Fasshauer, D., H. Otto, W. Eliason, R. Jahn, and A. Brunger. 1997. Structural changes are associated with soluble n-ethylmaleimide-sen-sitive fusion protein attachment protein receptor complex formation. J. Biol. Chem. 272:28036-28041.
-
(1997)
J. Biol. Chem
, vol.272
, pp. 28036-28041
-
-
Fasshauer, D.1
Otto, H.2
Eliason, W.3
Jahn, R.4
Brunger, A.5
-
7
-
-
0028130728
-
Synaptic vesicle membrane fusion complex: Action of clostridial neurotoxins on assembly
-
Hayashi, T., H. McMahon, S. Yamasaki, T. Binz, Y. Hata, T. C. Sudhof, and H. Niemann. 1994. Synaptic vesicle membrane fusion complex: action of clostridial neurotoxins on assembly. EMBO J. 13:5051-5061.
-
(1994)
EMBO J
, vol.13
, pp. 5051-5061
-
-
Hayashi, T.1
McMahon, H.2
Yamasaki, S.3
Binz, T.4
Hata, Y.5
Sudhof, T.C.6
Niemann, H.7
-
8
-
-
0036166318
-
Crystal structure of the endosomal SNARE complex reveals common structural principles of all SNAREs
-
Antonin, W., D. Fasshauer, S. Becker, R. Jahn, and T. R. Schneider. 2002. Crystal structure of the endosomal SNARE complex reveals common structural principles of all SNAREs. Nat. Struct. Biol. 9:107-111.
-
(2002)
Nat. Struct. Biol
, vol.9
, pp. 107-111
-
-
Antonin, W.1
Fasshauer, D.2
Becker, S.3
Jahn, R.4
Schneider, T.R.5
-
9
-
-
0037424295
-
High resolution structure, stability, and synaptotagmin binding of a truncated neuronal SNARE complex
-
Ernst, J. A., and A. T. Brunger. 2003. High resolution structure, stability, and synaptotagmin binding of a truncated neuronal SNARE complex. J. Biol. Chem. 278:8630-8636.
-
(2003)
J. Biol. Chem
, vol.278
, pp. 8630-8636
-
-
Ernst, J.A.1
Brunger, A.T.2
-
10
-
-
3543096759
-
Crystal structure of a SNARE complex involved in synaptic exocytosis at 2.4 Å resolution
-
Sutton, R. B., D. Fasshauer, R. Jahn, and A. T. Brunger. 1998. Crystal structure of a SNARE complex involved in synaptic exocytosis at 2.4 Å resolution. Nature. 395:347-353.
-
(1998)
Nature
, vol.395
, pp. 347-353
-
-
Sutton, R.B.1
Fasshauer, D.2
Jahn, R.3
Brunger, A.T.4
-
11
-
-
0032430423
-
Conserved structural features of the synaptic fusion complex: SNARE proteins reclassified as Q-and R-SNAREs
-
Fasshauer, D., R. B. Sutton, A. T. Brunger, and R. Jahn. 1998. Conserved structural features of the synaptic fusion complex: SNARE proteins reclassified as Q-and R-SNAREs. Proc. Natl. Acad. Sci. USA. 95:15781-15786.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 15781-15786
-
-
Fasshauer, D.1
Sutton, R.B.2
Brunger, A.T.3
Jahn, R.4
-
12
-
-
0037697285
-
Defining the SNARE complex binding surface of α-SNAP: Implications for SNARE complex disassembly
-
Marz, K. E., J. M. Lauer, and P. I. Hanson. 2003. Defining the SNARE complex binding surface of α-SNAP: implications for SNARE complex disassembly. J. Biol. Chem. 278:27000-27008.
-
(2003)
J. Biol. Chem
, vol.278
, pp. 27000-27008
-
-
Marz, K.E.1
Lauer, J.M.2
Hanson, P.I.3
-
13
-
-
0034669052
-
Exocytosis requires asymmetry in the central layer of the SNARE complex
-
Ossig, R., H. Schmitt, B. de Groot, D. Riedel, S. Keranen, H. Ronne, H. Grubmüller, and R. Jahn. 2000. Exocytosis requires asymmetry in the central layer of the SNARE complex. EMBO J. 19:6000-6010.
-
(2000)
EMBO J
, vol.19
, pp. 6000-6010
-
-
Ossig, R.1
Schmitt, H.2
de Groot, B.3
Riedel, D.4
Keranen, S.5
Ronne, H.6
Grubmüller, H.7
Jahn, R.8
-
14
-
-
33644852285
-
Sequential N- to C-terminal SNARE complex assembly drives priming and fusion of secretory vesicles
-
Sørensen, J., K. Wiederhold, E. M̈ller, I. Milosevic, G. Nagy, B. de Groot, H. Grubmüller, and D. Fasshauer. 2006. Sequential N- to C-terminal SNARE complex assembly drives priming and fusion of secretory vesicles. EMBO J. 25:955-966.
-
(2006)
EMBO J
, vol.25
, pp. 955-966
-
-
Sørensen, J.1
Wiederhold, K.2
M̈ller, E.3
Milosevic, I.4
Nagy, G.5
de Groot, B.6
Grubmüller, H.7
Fasshauer, D.8
-
15
-
-
34247383535
-
Modification of a hydro-phobic layer by a point mutation in syntaxin 1A regulates the rate of synaptic vesicle fusion
-
Lagow, R., H. Bao, E. Cohen, R. Daniels, A. Zuzek, W. Williams, G. Macleod, R. Sutton, and B. Zhang. 2007. Modification of a hydro-phobic layer by a point mutation in syntaxin 1A regulates the rate of synaptic vesicle fusion. PLoS Biol. 5:e72.
-
(2007)
PLoS Biol
, vol.5
-
-
Lagow, R.1
Bao, H.2
Cohen, E.3
Daniels, R.4
Zuzek, A.5
Williams, W.6
Macleod, G.7
Sutton, R.8
Zhang, B.9
-
16
-
-
28644444542
-
Alternative splicing of SNAP-25 regulates secretion through nonconservative substitutions in the SNARE domain
-
Nagy, G., I. Milosevic, D. Fasshauer, E. Muller, B. de Groot, T. Lang, M. Wilson, and J. Sørensen. 2005. Alternative splicing of SNAP-25 regulates secretion through nonconservative substitutions in the SNARE domain. Mol. Biol. Cell. 16:5675-5685.
-
(2005)
Mol. Biol. Cell
, vol.16
, pp. 5675-5685
-
-
Nagy, G.1
Milosevic, I.2
Fasshauer, D.3
Muller, E.4
de Groot, B.5
Lang, T.6
Wilson, M.7
Sørensen, J.8
-
17
-
-
10344223464
-
Making optimal use of empirical energy functions: Force-field parameterization in crystal space
-
Krieger, E., T. Darden, S. B. Nabuurs, A. Finkelstein, and G. Vriend. 2004.Making optimal use of empirical energy functions: force-field parameterization in crystal space. Proteins. 57:678-683.
-
(2004)
Proteins
, vol.57
, pp. 678-683
-
-
Krieger, E.1
Darden, T.2
Nabuurs, S.B.3
Finkelstein, A.4
Vriend, G.5
-
19
-
-
23444454552
-
-
Case, D. A., T. E. Cheatham 3rd, T. Darden, H. Gohlke, R. Luo, K. M. Merz, Jr., A. Onufriev, C. Simmerling, B. Wang, and R. J. Woods. 2005.The AMBER biomolecular simulation programs. J. Comput. Chem. 26:1668-1688.
-
Case, D. A., T. E. Cheatham 3rd, T. Darden, H. Gohlke, R. Luo, K. M. Merz, Jr., A. Onufriev, C. Simmerling, B. Wang, and R. J. Woods. 2005.The AMBER biomolecular simulation programs. J. Comput. Chem. 26:1668-1688.
-
-
-
-
20
-
-
0035789518
-
GROMACS 3.0: A package for molecular simulation and trajectory analysis
-
Lindahl, E., B. Hess, and D. van der Spoel. 2001. GROMACS 3.0: a package for molecular simulation and trajectory analysis. J. Mol. Model. 7:306-317.
-
(2001)
J. Mol. Model
, vol.7
, pp. 306-317
-
-
Lindahl, E.1
Hess, B.2
van der Spoel, D.3
-
21
-
-
0001486104
-
GROMOS force field
-
P. von Rague Schleyer, editor. Wiley-VCH, Chichester, UK
-
Van Gunsteren, W. F., X. Daura, and A. Mark. 1998. GROMOS force field. In Encyclopedia of Computational Chemistry, Vol. 2. P. von Rague Schleyer, editor. Wiley-VCH, Chichester, UK.
-
(1998)
Encyclopedia of Computational Chemistry
, vol.2
-
-
Van Gunsteren, W.F.1
Daura, X.2
Mark, A.3
-
22
-
-
0001398008
-
How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules?
-
Wang, J., P. Cieplak, and P. A. Kollman. 2000. How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules? J. Comput. Chem. 21:1049-1074.
-
(2000)
J. Comput. Chem
, vol.21
, pp. 1049-1074
-
-
Wang, J.1
Cieplak, P.2
Kollman, P.A.3
-
23
-
-
14244273182
-
Theory and applications of the generalized Born solvation model in macromolecular simulations
-
Tsui, V., and D. A. Case. 2000. Theory and applications of the generalized Born solvation model in macromolecular simulations. Biopolymers. 56:275-291.
-
(2000)
Biopolymers
, vol.56
, pp. 275-291
-
-
Tsui, V.1
Case, D.A.2
-
24
-
-
1842479952
-
Exploring protein native states and large-scale conformational changes with a modified generalized Born model
-
Onufriev, A., D. Bashford, and D. A. Case. 2004. Exploring protein native states and large-scale conformational changes with a modified generalized Born model. Proteins. 55:383-394.
-
(2004)
Proteins
, vol.55
, pp. 383-394
-
-
Onufriev, A.1
Bashford, D.2
Case, D.A.3
-
25
-
-
0344796204
-
Ion-water interaction potentials derived from free energy perturbation simulations
-
Aqvist, J. 1990. Ion-water interaction potentials derived from free energy perturbation simulations. J. Phys. Chem. 94:8021-8024.
-
(1990)
J. Phys. Chem
, vol.94
, pp. 8021-8024
-
-
Aqvist, J.1
-
26
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
Jorgensen, W. L., J. Chandrasekhar, and J. D. Madura. 1983. Comparison of simple potential functions for simulating liquid water. J. Chem. Phys. 79:926-936.
-
(1983)
J. Chem. Phys
, vol.79
, pp. 926-936
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
-
27
-
-
0002775934
-
Interaction models for water in relation to protein hydration
-
B. Pullman, editor. Reidel Publishing Company, Dordrecht, The Netherlands
-
Berendsen, H. J. C., and J. P. M. Postma. W. F. v. Gunsteren, and J. Hermans. 1981. Interaction models for water in relation to protein hydration. In Intermolecular Forces. B. Pullman, editor. Reidel Publishing Company, Dordrecht, The Netherlands.
-
(1981)
Intermolecular Forces
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Gunsteren, W.F.V.3
Hermans, J.4
-
28
-
-
33846823909
-
Particle mesh Ewald-an N-log(N) method for Ewald sums in large systems
-
Darden, T., D. York, and L. Pedersen. 1993. Particle mesh Ewald-an N-log(N) method for Ewald sums in large systems. J. Chem. Phys. 98: 10089-10092.
-
(1993)
J. Chem. Phys
, vol.98
, pp. 10089-10092
-
-
Darden, T.1
York, D.2
Pedersen, L.3
-
29
-
-
33646940952
-
Numerical integration of the Cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes
-
Ryckaert, J.-P., G. Ciccotti, and H. Berendsen. 1977. Numerical integration of the Cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes. J. Comput. Phys. 23:327-341.
-
(1977)
J. Comput. Phys
, vol.23
, pp. 327-341
-
-
Ryckaert, J.-P.1
Ciccotti, G.2
Berendsen, H.3
-
30
-
-
0000388705
-
LINCS: A linear constraint solver for molecular simulations
-
Hess, B., H. Bekker, H. J. C. Berendsen, and J. Fraaije. 1997. LINCS: a linear constraint solver for molecular simulations. J. Comput. Chem. 18: 1463-1472.
-
(1997)
J. Comput. Chem
, vol.18
, pp. 1463-1472
-
-
Hess, B.1
Bekker, H.2
Berendsen, H.J.C.3
Fraaije, J.4
-
31
-
-
33750587438
-
Molecular dynamics with coupling to an external bath
-
Berendsen, H. J. C., J. P. M. Postma, W. F. Vangunsteren, A. Dinola, and J. R. Haak. 1984. Molecular dynamics with coupling to an external bath. J. Chem. Phys. 81:3684-3690.
-
(1984)
J. Chem. Phys
, vol.81
, pp. 3684-3690
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Vangunsteren, W.F.3
Dinola, A.4
Haak, J.R.5
-
32
-
-
85031350608
-
-
Duke, R. E., and L. G. Pedersen. 2003. PMEMD 3. University of North Carolina-Chapel Hill, Chapel Hill, NC.
-
Duke, R. E., and L. G. Pedersen. 2003. PMEMD 3. University of North Carolina-Chapel Hill, Chapel Hill, NC.
-
-
-
-
33
-
-
0026869597
-
Langevin dynamics of peptides: The frictional dependence of isomerization rates of n-acetyl-alanyl-n′-methylamide
-
Loncharich, R., B. Brooks, and R. Pastor. 1992. Langevin dynamics of peptides: the frictional dependence of isomerization rates of n-acetyl-alanyl-n′-methylamide. Biopolymers. 32:523-535.
-
(1992)
Biopolymers
, vol.32
, pp. 523-535
-
-
Loncharich, R.1
Brooks, B.2
Pastor, R.3
-
34
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch, W., and C. Sander. 1983. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers. 22:2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
35
-
-
3242887525
-
STRIDE: A web server for secondary structure assignment from known atomic coordinates of proteins
-
Heinig, M., and D. Frishman. 2004. STRIDE: a web server for secondary structure assignment from known atomic coordinates of proteins. Nucleic Acids Res. 32:W500-W502.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Heinig, M.1
Frishman, D.2
-
37
-
-
58549121354
-
YASARA, a molecular graphics, modeling and simulation program for Linux, Windows and Mac OS X
-
Graz, Austria
-
Krieger, E. 1993-2007. YASARA, a molecular graphics, modeling and simulation program for Linux, Windows and Mac OS X. Yasara Biosciences, Graz, Austria.
-
(1993)
Yasara Biosciences
-
-
Krieger, E.1
-
38
-
-
85031361337
-
-
2nd Ed. Prentice-Hall, Engle-wood Cliffs, NJ
-
Will, S., M. M. Kenneth, and E. L. William. 1998. An Object-Oriented Approach to the Visualization Toolkit, 2nd Ed. Prentice-Hall, Engle-wood Cliffs, NJ.
-
(1998)
An Object-Oriented Approach to the Visualization Toolkit
-
-
Will, S.1
Kenneth, M.M.2
William, E.L.3
-
39
-
-
0024821134
-
Describing protein structure: A general algorithm yielding complete helicoidal parameters and a unique overall axis
-
Sklenar, H., C. Etchebest, and R. Lavery. 1989. Describing protein structure: a general algorithm yielding complete helicoidal parameters and a unique overall axis. Proteins. 6:46-60.
-
(1989)
Proteins
, vol.6
, pp. 46-60
-
-
Sklenar, H.1
Etchebest, C.2
Lavery, R.3
-
40
-
-
85031365515
-
-
Reference deleted in proof
-
Reference deleted in proof.
-
-
-
-
42
-
-
0034407116
-
A SNARE complex mediating fusion of late endosomes defines conserved properties of SNARE structure and function
-
Antonin, W., C. Holroyd, D. Fasshauer, S. Pabst, G. F. Von Mollard, and R. Jahn. 2000. A SNARE complex mediating fusion of late endosomes defines conserved properties of SNARE structure and function. EMBO J. 19:6453-6464.
-
(2000)
EMBO J
, vol.19
, pp. 6453-6464
-
-
Antonin, W.1
Holroyd, C.2
Fasshauer, D.3
Pabst, S.4
Von Mollard, G.F.5
Jahn, R.6
-
43
-
-
0033607279
-
Rapid and efficient fusion of phospholipid vesicles by the α-helical core of a SNARE complex in the absence of an N-terminal regulatory domain
-
Parlati, F., T. Weber, J. A. McNew, B. Westermann, T. H. Sollner, and J. E. Rothman. 1999. Rapid and efficient fusion of phospholipid vesicles by the α-helical core of a SNARE complex in the absence of an N-terminal regulatory domain. Proc. Natl. Acad. Sci. USA. 96:12565-12570.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 12565-12570
-
-
Parlati, F.1
Weber, T.2
McNew, J.A.3
Westermann, B.4
Sollner, T.H.5
Rothman, J.E.6
-
44
-
-
0032555126
-
Identification of a minimal core of the synaptic SNARE complex sufficient for reversible assembly and disassembly
-
Fasshauer, D., W. Eliason, A. Brünger, and R. Jahn. 1998. Identification of a minimal core of the synaptic SNARE complex sufficient for reversible assembly and disassembly. Biochemistry. 37:10354-10362.
-
(1998)
Biochemistry
, vol.37
, pp. 10354-10362
-
-
Fasshauer, D.1
Eliason, W.2
Brünger, A.3
Jahn, R.4
-
45
-
-
24944581235
-
Monte Carlo molecular simulation predictions for the heat of vaporization of acetone and butyramide
-
Martin, M., and M. Biddy. 2005. Monte Carlo molecular simulation predictions for the heat of vaporization of acetone and butyramide. Fluid Phase Equil. 236:53-57.
-
(2005)
Fluid Phase Equil
, vol.236
, pp. 53-57
-
-
Martin, M.1
Biddy, M.2
-
46
-
-
1642289215
-
Industrial property prediction using Towhee and LAMMPS
-
Martin, M., and A. Thompson. 2004. Industrial property prediction using Towhee and LAMMPS. Fluid Phase Equil. 217:105-110.
-
(2004)
Fluid Phase Equil
, vol.217
, pp. 105-110
-
-
Martin, M.1
Thompson, A.2
-
47
-
-
33746271105
-
Biomolecular modeling: Goals, problems, perspectives
-
van Gunsteren, W. F., D. Bakowies, R. Baron, I. Chandrasekhar, M. Christen, X. Daura, P. Gee, D. P. Geerke, A. Glattli, P. H. Hunenberger, M. A. Kastenholz, C. Oostenbrink, M. Schenk, D. Trzesniak, N. F. van der Vegt, and H. B. Yu. 2006. Biomolecular modeling: goals, problems, perspectives. Angew. Chem. Int. Ed. Engl. 45:4064-4092.
-
(2006)
Angew. Chem. Int. Ed. Engl
, vol.45
, pp. 4064-4092
-
-
van Gunsteren, W.F.1
Bakowies, D.2
Baron, R.3
Chandrasekhar, I.4
Christen, M.5
Daura, X.6
Gee, P.7
Geerke, D.P.8
Glattli, A.9
Hunenberger, P.H.10
Kastenholz, M.A.11
Oostenbrink, C.12
Schenk, M.13
Trzesniak, D.14
van der Vegt, N.F.15
Yu, H.B.16
-
48
-
-
0031041456
-
A structural change occurs upon binding of syntaxin to SNAP-25
-
Fasshauer, D., D. Bruns, B. Shen, R. Jahn, and A. Brunger. 1997. A structural change occurs upon binding of syntaxin to SNAP-25. J. Biol. Chem. 272:4582-4590.
-
(1997)
J. Biol. Chem
, vol.272
, pp. 4582-4590
-
-
Fasshauer, D.1
Bruns, D.2
Shen, B.3
Jahn, R.4
Brunger, A.5
-
49
-
-
0347363561
-
Circular dichroism spectra of β-peptides: Sensitivity to molecular structure and effects of motional averaging
-
Daura, X., D. Bakowies, D. Seebach, J. Fleischhauer, W. F. van Gunsteren, and P. Kruger. 2003. Circular dichroism spectra of β-peptides: sensitivity to molecular structure and effects of motional averaging. Eur. Biophys. J. 32:661-670.
-
(2003)
Eur. Biophys. J
, vol.32
, pp. 661-670
-
-
Daura, X.1
Bakowies, D.2
Seebach, D.3
Fleischhauer, J.4
van Gunsteren, W.F.5
Kruger, P.6
-
50
-
-
0031668972
-
The synaptic SNARE complex is a parallel four-stranded helical bundle
-
Poirier, M., W. Xiao, J. Macosko, C. Chan, Y. Shin, and M. Bennett. 1998. The synaptic SNARE complex is a parallel four-stranded helical bundle. Nat. Struct. Biol. 5:765-769.
-
(1998)
Nat. Struct. Biol
, vol.5
, pp. 765-769
-
-
Poirier, M.1
Xiao, W.2
Macosko, J.3
Chan, C.4
Shin, Y.5
Bennett, M.6
-
51
-
-
0035066645
-
The neuronal t-SNARE complex is a parallel four-helix bundle
-
Xiao, W., M. Poirier, M. Bennett, and Y. Shin. 2001. The neuronal t-SNARE complex is a parallel four-helix bundle. Nat. Struct. Biol 8:308-311.
-
(2001)
Nat. Struct. Biol
, vol.8
, pp. 308-311
-
-
Xiao, W.1
Poirier, M.2
Bennett, M.3
Shin, Y.4
-
52
-
-
0037025372
-
The four-helix bundle of the neuronal target membrane SNARE complex is neither disordered in the middle nor uncoiled at the C-terminal region
-
Zhang, F., Y. Chen, D. Kweon, C. Kim, and Y. Shin. 2002. The four-helix bundle of the neuronal target membrane SNARE complex is neither disordered in the middle nor uncoiled at the C-terminal region. J. Biol. Chem. 277:24294-24298.
-
(2002)
J. Biol. Chem
, vol.277
, pp. 24294-24298
-
-
Zhang, F.1
Chen, Y.2
Kweon, D.3
Kim, C.4
Shin, Y.5
-
53
-
-
0035918302
-
Homo- and heterooligomeric SNARE complexes studied by site-directed spin labeling
-
Margittai, M., D. Fasshauer, S. Pabst, R. Jahn, and R. Langen. 2001. Homo- and heterooligomeric SNARE complexes studied by site-directed spin labeling. J. Biol. Chem. 276:13169-13177.
-
(2001)
J. Biol. Chem
, vol.276
, pp. 13169-13177
-
-
Margittai, M.1
Fasshauer, D.2
Pabst, S.3
Jahn, R.4
Langen, R.5
-
54
-
-
0345269748
-
The HABC domain and the SNARE core complex are connected by a highly flexible linker
-
Margittai, M., D. Fasshauer, R. Jahn, and R. Langen. 2003. The HABC domain and the SNARE core complex are connected by a highly flexible linker. Biochemistry. 42:4009-4014.
-
(2003)
Biochemistry
, vol.42
, pp. 4009-4014
-
-
Margittai, M.1
Fasshauer, D.2
Jahn, R.3
Langen, R.4
-
55
-
-
85031347951
-
-
Reference deleted in proof
-
Reference deleted in proof.
-
-
-
-
57
-
-
4644219882
-
SNARE assembly and membrane fusion, a kinetic analysis
-
Zhang, F., Y. Chen, Z. Su, and Y. Shin. 2004. SNARE assembly and membrane fusion, a kinetic analysis. J. Biol. Chem. 279:38668-38672.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 38668-38672
-
-
Zhang, F.1
Chen, Y.2
Su, Z.3
Shin, Y.4
-
58
-
-
0038103601
-
Regulation of neuronal SNARE assembly by the membrane
-
Kweon, D., C. Kim, and Y. Shin. 2003. Regulation of neuronal SNARE assembly by the membrane. Nat. Struct. Biol. 10:440-447.
-
(2003)
Nat. Struct. Biol
, vol.10
, pp. 440-447
-
-
Kweon, D.1
Kim, C.2
Shin, Y.3
-
59
-
-
0032404442
-
A model for structural similarity between different SNARE complexes based on sequence relationships
-
Weimbs, T., K. Mostov, S. H. Low, and K. Hofmann. 1998. A model for structural similarity between different SNARE complexes based on sequence relationships. Trends Cell Biol. 8:260-262.
-
(1998)
Trends Cell Biol
, vol.8
, pp. 260-262
-
-
Weimbs, T.1
Mostov, K.2
Low, S.H.3
Hofmann, K.4
-
60
-
-
0032971604
-
Electrostatic attraction at the core of membrane fusion
-
Montal, M. 1999. Electrostatic attraction at the core of membrane fusion. FEBS Lett. 447:129-130.
-
(1999)
FEBS Lett
, vol.447
, pp. 129-130
-
-
Montal, M.1
-
61
-
-
0034662499
-
2+-dependent regulation of synaptic SNARE complex assembly via a calmodulin-and phospholipid-binding domain of synaptobrevin
-
2+-dependent regulation of synaptic SNARE complex assembly via a calmodulin-and phospholipid-binding domain of synaptobrevin. Proc. Natl. Acad. Sci. USA. 97:9695-9700.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 9695-9700
-
-
Quetglas, S.1
Leveque, C.2
Miquelis, R.3
Sato, K.4
Seagar, M.5
-
62
-
-
0035576015
-
Targeted mutations in the syntaxin H3 domain specifically disrupt SNARE complex function in synaptic transmission
-
Fergestad, T., M. Wu, K. Schulze, T. Lloyd, H. Bellen, and K. Broadie. 2001. Targeted mutations in the syntaxin H3 domain specifically disrupt SNARE complex function in synaptic transmission. J. Neurosci. 21:9142-9150.
-
(2001)
J. Neurosci
, vol.21
, pp. 9142-9150
-
-
Fergestad, T.1
Wu, M.2
Schulze, K.3
Lloyd, T.4
Bellen, H.5
Broadie, K.6
-
63
-
-
0036841307
-
SNAREs in opposing bilayers interact in a circular array to form conducting pores
-
Cho, S., M. Kelly, K. Rognlien, J. Cho, J. Horber, and B. Jena. 2002. SNAREs in opposing bilayers interact in a circular array to form conducting pores. Biophys. J. 83:2522-2527.
-
(2002)
Biophys. J
, vol.83
, pp. 2522-2527
-
-
Cho, S.1
Kelly, M.2
Rognlien, K.3
Cho, J.4
Horber, J.5
Jena, B.6
-
64
-
-
0037204076
-
Three-dimensional structure of the complexin/SNARE complex
-
Chen, X., D. Tomchick, E. Kovrigin, D. Arac, M. Machius, T. Südhof, and J. Rizo. 2002. Three-dimensional structure of the complexin/SNARE complex. Neuron. 33:397-409.
-
(2002)
Neuron
, vol.33
, pp. 397-409
-
-
Chen, X.1
Tomchick, D.2
Kovrigin, E.3
Arac, D.4
Machius, M.5
Südhof, T.6
Rizo, J.7
-
65
-
-
10344261477
-
Conformational sampling and dynamics of membrane proteins from 10-nanosecond computer simulations
-
Faraldo-Gomez, J. D., L. R. Forrest, M. Baaden, P. J. Bond, C. Domene, G. Patargias, J. Cuthbertson, and M. S. Sansom. 2004. Conformational sampling and dynamics of membrane proteins from 10-nanosecond computer simulations. Proteins. 57:783-791.
-
(2004)
Proteins
, vol.57
, pp. 783-791
-
-
Faraldo-Gomez, J.D.1
Forrest, L.R.2
Baaden, M.3
Bond, P.J.4
Domene, C.5
Patargias, G.6
Cuthbertson, J.7
Sansom, M.S.8
-
66
-
-
0035022654
-
Continuum solvent molecular dynamics study of flexibility in interleukin-8
-
Cornell, W., R. Abseher, M. Nilges, and D. A. Case. 2001. Continuum solvent molecular dynamics study of flexibility in interleukin-8. J. Mol. Graph. Model. 19:136-145.
-
(2001)
J. Mol. Graph. Model
, vol.19
, pp. 136-145
-
-
Cornell, W.1
Abseher, R.2
Nilges, M.3
Case, D.A.4
-
67
-
-
33847723384
-
Secondary structure bias in generalized Born solvent models: Comparison of conformational ensembles and free energy of solvent polarization from explicit and implicit solvation
-
Roe, D. R., A. Okur, L. Wickstrom, V. Hornak, and C. Simmerling. 2007. Secondary structure bias in generalized Born solvent models: comparison of conformational ensembles and free energy of solvent polarization from explicit and implicit solvation. J. Phys. Chem. B. 111:1846-1857.
-
(2007)
J. Phys. Chem. B
, vol.111
, pp. 1846-1857
-
-
Roe, D.R.1
Okur, A.2
Wickstrom, L.3
Hornak, V.4
Simmerling, C.5
-
68
-
-
33745960026
-
Investigation of salt bridge stability in a generalized Born solvent model
-
Geney, R., M. Layten, R. Gomperts, V. Hornak, and C. Simmerling. 2006. Investigation of salt bridge stability in a generalized Born solvent model. J. Chem. Theory Comput. 2:115-127.
-
(2006)
J. Chem. Theory Comput
, vol.2
, pp. 115-127
-
-
Geney, R.1
Layten, M.2
Gomperts, R.3
Hornak, V.4
Simmerling, C.5
-
69
-
-
84906505829
-
Atomistic modeling of the membrane-embedded synaptic fusion complex: A grand challenge project on the DEISA HPC infrastructure
-
C. B. G. R. Joubert, F. Peters, T. Lippert, M. Bücker, P. Gibbon, and B. Mohr, editors. John von Neumann Institute for Computing, Juelich, Germany
-
Krieger, E., L. Leger, M.-P. Durrieu, N. Taib, P. Bond, M. Laguerre, R. Lavery, M. S. Sansom, and M. Baaden. 2007. Atomistic modeling of the membrane-embedded synaptic fusion complex: a grand challenge project on the DEISA HPC infrastructure. In ParCo 2007, Parallel Computing: Architectures, Algorithms and Applications. C. B. G. R. Joubert, F. Peters, T. Lippert, M. Bücker, P. Gibbon, and B. Mohr, editors. John von Neumann Institute for Computing, Juelich, Germany.
-
(2007)
ParCo 2007, Parallel Computing: Architectures, Algorithms and Applications
-
-
Krieger, E.1
Leger, L.2
Durrieu, M.-P.3
Taib, N.4
Bond, P.5
Laguerre, M.6
Lavery, R.7
Sansom, M.S.8
Baaden, M.9
|