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Volumn 109, Issue 11, 1998, Pages 4139-4146

The calculation of free-energy differences by constrained molecular-dynamics simulations

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTER SIMULATION; INTEGRATION; MATHEMATICAL MODELS; MOLECULAR DYNAMICS; MOLECULES; PERTURBATION TECHNIQUES; PROBABILITY DISTRIBUTIONS; REACTION KINETICS; VECTORS;

EID: 0032529893     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.477019     Document Type: Article
Times cited : (173)

References (32)
  • 1
    • 0002696949 scopus 로고
    • in edited by K. B. Lipkowitz and D. R. Boyd VCH Publishers, New York
    • R. M. Whitnell and K. R. Wilson, in Reviews in Computational Chemistry, edited by K. B. Lipkowitz and D. R. Boyd (VCH Publishers, New York, 1993), Vol. 4, p. 67.
    • (1993) Reviews in Computational Chemistry , vol.4 , pp. 67
    • Whitnell, R.M.1    Wilson, K.R.2
  • 5
    • 0030503687 scopus 로고    scopus 로고
    • in edited by K. B. Lipkowitz and D. B. Boyd VCH Publishers, New York
    • T. P. Straatsma, in Reviews in Computational Chemistry, edited by K. B. Lipkowitz and D. B. Boyd (VCH Publishers, New York, 1996), Vol. 9, p. 81.
    • (1996) Reviews in Computational Chemistry , vol.9 , pp. 81
    • Straatsma, T.P.1
  • 31
    • 22244449994 scopus 로고    scopus 로고
    • The usual choice for a coordinate to supplement ξ in this case would be the polar angle. This coordinate is in agreement with Eq. (5.2), but does not obey the orthonormality condition of Eq. (5.1). It takes some straightforward manipulations to find the correct Jacobian for this choice. The method by Ruiz-Montero et al. was particularly designed to circumvent this need to specify the supplementary coordinates
    • The usual choice for a coordinate to supplement ξ in this case would be the polar angle. This coordinate is in agreement with Eq. (5.2), but does not obey the orthonormality condition of Eq. (5.1). It takes some straightforward manipulations to find the correct Jacobian for this choice. The method by Ruiz-Montero et al. was particularly designed to circumvent this need to specify the supplementary coordinates.


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