-
1
-
-
0000003059
-
Free energy calculations: A theoretical and empirical comparison of numerical errors and a new method for qualitative estimates of free energy changes
-
Radmer, R. J. and Kollman, P. A. (1997). Free energy calculations: A theoretical and empirical comparison of numerical errors and a new method for qualitative estimates of free energy changes. J. Comp. Chem., 18, 902.
-
(1997)
J. Comp. Chem.
, vol.18
, pp. 902
-
-
Radmer, R.J.1
Kollman, P.A.2
-
2
-
-
16444385400
-
Monte-Carlo free energy estimates using non-Boltzmann sampling. Application to the subcritical Lennard-Jones fluid
-
Torrie, G. M. and Valleau, J. P. (1974). Monte-Carlo free energy estimates using non-Boltzmann sampling. Application to the subcritical Lennard-Jones fluid. Chem. Phys. Lett., 28, 578.
-
(1974)
Chem. Phys. Lett.
, vol.28
, pp. 578
-
-
Torrie, G.M.1
Valleau, J.P.2
-
3
-
-
0342929614
-
Nonphysical sampling distributions in Monte Carlo free energy estimation: Umbrella sampling
-
Torrie, G. M. and Valleau, J. P. (1977). Nonphysical sampling distributions in Monte Carlo free energy estimation: Umbrella sampling. J. Comp. Phys., 23, 187.
-
(1977)
J. Comp. Phys.
, vol.23
, pp. 187
-
-
Torrie, G.M.1
Valleau, J.P.2
-
4
-
-
33746353056
-
-
Valleau, J. P. and Torrie, G. M. (1977). Plenum Press, New York
-
Valleau, J. P. and Torrie, G. M. (1977). Plenum Press, New York.
-
-
-
-
5
-
-
4243661501
-
Constrained reaction coordinate dynamics for the simulation of rare events
-
Carter, E. A., Ciccotti, G., Hynes, J. T. and Kapral, R. (1989). Constrained reaction coordinate dynamics for the simulation of rare events. Chem. Phys. Lett., 156, 472.
-
(1989)
Chem. Phys. Lett.
, vol.156
, pp. 472
-
-
Carter, E.A.1
Ciccotti, G.2
Hynes, J.T.3
Kapral, R.4
-
6
-
-
0001702831
-
Free energy from constrained molecular dynamics
-
Sprik, M. and Ciccotti, G. (1998). Free energy from constrained molecular dynamics. J. Chem. Phys., 109, 7737.
-
(1998)
J. Chem. Phys.
, vol.109
, pp. 7737
-
-
Sprik, M.1
Ciccotti, G.2
-
7
-
-
84986519238
-
The weighted histogram analysis method for free energy calculations on biomolecules
-
Kumar, S., Swendsen, R. H., Kollman, P. A. and Rosenberg, J. M. (1992). The weighted histogram analysis method for free energy calculations on biomolecules. J. Comp. Chem., 13, 1011.
-
(1992)
J. Comp. Chem.
, vol.13
, pp. 1011
-
-
Kumar, S.1
Swendsen, R.H.2
Kollman, P.A.3
Rosenberg, J.M.4
-
8
-
-
0025294114
-
Conformational sampling using high-temperature molecular dynamics
-
Bruccoleri, R. E. and Karplus, M. (1990). Conformational sampling using high-temperature molecular dynamics. Biopolymers, 29, 3975.
-
(1990)
Biopolymers
, vol.29
, pp. 3975
-
-
Bruccoleri, R.E.1
Karplus, M.2
-
9
-
-
0030747109
-
Solvent, force field, temperature and quantum effects on the folding free energy surface of blocked alanine tripeptide
-
Samuelson, S. and Martyna, G. J. (1997). Solvent, force field, temperature and quantum effects on the folding free energy surface of blocked alanine tripeptide. J. Chim. Phys., 94, 1503.
-
(1997)
J. Chim. Phys.
, vol.94
, pp. 1503
-
-
Samuelson, S.1
Martyna, G.J.2
-
10
-
-
0001444785
-
Adiabatic path integral molecular dynamics
-
Cao, J. and Martyna, G. J. (1996). Adiabatic path integral molecular dynamics. J. Chem. Phys., 104, 2028.
-
(1996)
J. Chem. Phys.
, vol.104
, pp. 2028
-
-
Cao, J.1
Martyna, G.J.2
-
11
-
-
0033132182
-
Quantum dynamics via adiabatic ab initio centroid molecular dynamics
-
Marx, D., Tuckerman, M. E. and Martyna, G. J. (1999). Quantum dynamics via adiabatic ab initio centroid molecular dynamics. Comp. Phys. Comm., 118, 166.
-
(1999)
Comp. Phys. Comm.
, vol.118
, pp. 166
-
-
Marx, D.1
Tuckerman, M.E.2
Martyna, G.J.3
-
12
-
-
36449000062
-
Nose-Hoover chains: The canonical ensemble via continuous dynamics
-
Martyna, G. J., Tuckerman, M. E. and Klein, M. L. (1992). Nose-Hoover chains: The canonical ensemble via continuous dynamics. J. Chem. Phys., 97, 2635.
-
(1992)
J. Chem. Phys.
, vol.97
, pp. 2635
-
-
Martyna, G.J.1
Tuckerman, M.E.2
Klein, M.L.3
-
13
-
-
0000092775
-
Generalized Gaussian moment thermostatting: A new continuous dynamical approach to the canonical ensemble
-
Liu, Y. and Tuckerman, M. E. (2000). Generalized Gaussian moment thermostatting: A new continuous dynamical approach to the canonical ensemble. J. Chem. Phys., 112, 1685.
-
(2000)
J. Chem. Phys.
, vol.112
, pp. 1685
-
-
Liu, Y.1
Tuckerman, M.E.2
-
14
-
-
33646650705
-
Reversible multiple time scale molecular dynamics
-
Tuckerman, M. E., Martyna, G. J. and Berne, B. J. (1992). Reversible multiple time scale molecular dynamics. J. Chem. Phys., 97, 1990.
-
(1992)
J. Chem. Phys.
, vol.97
, pp. 1990
-
-
Tuckerman, M.E.1
Martyna, G.J.2
Berne, B.J.3
-
15
-
-
33746337892
-
Free energy profiles via adiabatic molecular dynamics
-
To be published
-
Rosso, L. and Tuckerman, M. E., Free energy profiles via adiabatic molecular dynamics. J. Chem. Phys. (To be published).
-
J. Chem. Phys.
-
-
Rosso, L.1
Tuckerman, M.E.2
-
16
-
-
36448999094
-
Efficient molecular dynamics and hybrid Monte Carlo algorithms for path integrals
-
Tuckerman, M. E., Martyna, G. J., Klein, M. L. and Berne, B. J. (1993). Efficient molecular dynamics and hybrid Monte Carlo algorithms for path integrals. J. Chem. Phys., 99, 2796.
-
(1993)
J. Chem. Phys.
, vol.99
, pp. 2796
-
-
Tuckerman, M.E.1
Martyna, G.J.2
Klein, M.L.3
Berne, B.J.4
-
17
-
-
0000026966
-
Reversible integrators for extended system molecular dynamics
-
Martyna, G. J., Tuckerman, M. E., Tobias, D. J. and Klein, M. L. (1996). Reversible integrators for extended system molecular dynamics. Mol. Phys., 87, 1117.
-
(1996)
Mol. Phys.
, vol.87
, pp. 1117
-
-
Martyna, G.J.1
Tuckerman, M.E.2
Tobias, D.J.3
Klein, M.L.4
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