Effect of a tridentate ligand on the structure, electronic structure, and reactivity of the copper(I) nitrite complex: Role of the conserved three-histidine ligand environment of the type-2 copper site in copper-containing nitrite reductases

Journal of the American Chemical Society

Volumn 130, Issue 19, 2008, Pages 6088-6098

  Kujime, Masato ^a   Izumi, Chiemi ^b   Tomura, Masaaki ^a   Hada, Masahiko ^b   Fujii, Hiroshi ^a  

^a INSTITUTE FOR MOLECULAR SCIENCE   (Japan)

^b TOKYO METROPOLITAN UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CRYSTAL STRUCTURE; DENITRIFICATION; ELECTRONIC STRUCTURE; LIGANDS; NITRIC OXIDE;

NITRITE REDUCTASES; TRIDENTATE LIGANDS;

COPPER COMPOUNDS;

CUPRIC ION; HISTIDINE; LIGAND; METHANE; METHANOL DERIVATIVE; NITRITE; NITRITE REDUCTASE; TRID(3,5 DIETHYL 1 PYRAZOLYL)METHANE; TRIS(1 METHYL 2 ETHYL 4 IMIDAZOLYL)CARBINOL; TRIS(1 METHYL 2 ISOPROPYL 4 IMIDAZOLYL)CARBINOL; TRIS(3,5 DIMETHYL 1 PYRAZOLYL)METHANE;

ABSORPTION; ARTICLE; CATALYSIS; CHEMICAL STRUCTURE; CIRCULAR DICHROISM; COMPLEX FORMATION; CRYSTAL STRUCTURE; NUCLEAR MAGNETIC RESONANCE; SPECTROSCOPY; STRUCTURE ACTIVITY RELATION; VIBRATIONAL SPECTROSCOPY; X RAY CRYSTALLOGRAPHY;

ACETIC ACID; ALCALIGENES FAECALIS; BINDING SITES; BIOMIMETIC MATERIALS; COPPER; CRYSTALLOGRAPHY, X-RAY; ELECTRON SPIN RESONANCE SPECTROSCOPY; HISTIDINE; IMIDAZOLES; KINETICS; LIGANDS; MAGNETIC RESONANCE SPECTROSCOPY; METHANOL; MODELS, MOLECULAR; NITRITE REDUCTASES; NITRITES; PYRAZOLES; SPECTROPHOTOMETRY, INFRARED; SPECTROPHOTOMETRY, ULTRAVIOLET;

EID: 43249103478     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja075575b     Document Type: Article

References (59)

1. Kroneck, P. M. H.; Zumft, W. G. In Denitrification in Soil and Sediment; Revsbech, N. P., Sorensen, J. , Eds.; Plenum: New York, 1990; pp 1-20.
2. Adman, E. T.; Turley, S. K. In Bioinorganic Chemistry of Copper; Karlin, K. D., Tyeklár, Z., Eds.; Chapman & Hall: New York, 1993; pp 397-405.
3. Averill, B. A. Chem. Rev. 1996, 96, 2951-2964.
4. Suzuki, S.; Kataoka, K.; Yamaguchi, K.; Inoue, T.; Kai, Y. Coord. Chem. Rev. 1999, 190-192, 245-265.
5. Wasser, I. M.; de Vries, S.; Moénne-Loccoz, P.; Schröder, I.; Karlin, K. D. Chem. Rev. 2002, 102, 1201-1234.
6. (a) Godden, J. W.; Turley, S.; Teller, D. C.; Adman, E. T.; Liu, M. Y.; Payne, W. J.; LeGall, J. W. Science 1991, 253, 438-442.
7. (b) Adman, E. T.; Godden, J. W.; Turley, S. J. Biol. Chem. 1995, 270, 27458-27474.
8. (a) Jacobson, F.; Guo, H.; Olesen, K.; Okvist, M.; Neutze, R.; Sjölin, L. Acta Crystallogr., Sect. D: Biol. Crystallogr. 2005, 1190-1198.
9. (b) Jacobson, F.; Pistorius, A.; Farkas, D.; De Grip, W.; Hansson, O.; Sjölin, L.; Neutze, R. J. Biol. Chem. 2007, 282, 6347-6355.
10. (a) Murphy, M. E. P.; Turley, S.; Kukimoto, M.; Nishiyama, M.; Horinouchi, S.; Sasaki, H.; Tanoruki, M.; Adman, E. T. Biochemistry 1995, 34, 12107-12117.
11. (b) Murphy, M. E. P.; Turley, S.; Adman, E. T. J. Biol. Chem. 1997, 272, 28455-28460.
12. (c) Tocheva, E. I.; Rosell, F. I.; Mauk, A. G.; Murphy, M. E. P. Science 2004, 304, 867-870.
13. (a) Dodd, F. E.; Hasnain, S. S.; Abraham, Z. H. L.; Eady, R. R.; Smith, B. E. Acta Crystallogr. D 1997, 53, 406-418.
14. (b) Dodd, F. E.; Van Beeumen, J.; Eady, R. R.; Hasnain, S. S. J. Mol. Biol. 1998, 282, 369-382.
15. (c) Antonyuk, S. V.; Strange, R. W.; Sawers, G.; Eady, R. R.; Hasnain, S. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 12041-12046.
16. (a) Boulanger, M. J.; Kukimoto, M.; Nishiyama, M.; Horinouchi, S.; Murphy, M. E. P. J. Biol. Chem. 2000, 275, 23957-23964.
17. (b) Boulanger, M. J.; Murphy, M. E. P. Biochemistry 2001, 40, 9132-9141.
18. Kataoka, K.; Rurusawa, K.; Takagi, H.; Yamaguchi, K.; Suzuki, S. J. Biochem. 2000, 197, 345-350.
19. Zhao, Y.; Lukoyanov, D. A.; Toropov, Y. V.; Wu, K.; Sharleigh, J. P.; Scholes, C. P. Biochemistry 2002, 41, 7464-7474.
20. Strange, R. W.; Murphy, L. M.; Dodd, F. E.; Abraham, Z. H.; Eady, R. R.; Smith, B. E.; Hasnain, S. S. J. Mol. Biol. 1999, 287, 1001-1009.
21. (a) Weeg-Aerssens, E.; Tiedje, J. M.; Averill, B. A. J. Am. Chem. Soc. 1988, 110, 6851-6856.
22. (b) Hulse, C. L.; Averill, B. A.; Tiedje, J. M. J. Am. Chem. Soc. 1989, 111, 2322-2323.
23. (c) Jackson, M. A.; Tiedje, J. M.; Averill, B. A. FEBS Lett. 1991, 291, 41-44.
24. (d) Ye, R. W.; Toro-Suarez, I.; Tiedje, J. M.; Averill, B. A. J. Biol. Chem. 1991, 266, 12848-12851.
25. Tolman, W. B. Inorg. Chem. 1991, 30, 4877-4880.
26. Komeda, N.; Nagao, H.; Adachi, G.; Suzuki, M.; Uehara, A.; Tanaka, K. Chem. Lett. 1993, 1521-1524.
27. Jiang, F.; Conry, R. R.; Bubacco, L.; Tyeklár, Z.; Jacobson, R. R.; Kalin, K. D.; Peisach, J. J. Am. Chem. Soc. 1993, 115, 2093-2102.
28. Ruggiero, C. E.; Carrier, S. M.; Tolman, W. B. Angew. Chem., Int. Ed. Engl. 1994, 33, 895-897.
29. Komeda, N.; Nagao, H.; Kushi, Y.; Adachi, G.; Suzuki, M.; Uehara, A.; Tanaka, K. Bull. Chem. Soc. Jpn. 1995, 68, 581-589.
30. Stibrany, R. T.; Potenza, J. A.; Schugar, H. J. Inorg. Chim. Acta 1996, 243, 33-37.
31. Casella, L.; Carugo, O.; Gullotti, M.; Doldi, S.; Frassoni, M. Inorg. Chem. 1996, 35, 1101-1113.
32. Schneider, J. L.; Carrier, S. M.; Ruggiero, C. E.; Young, V. G., Jr.; Tolman, W. B. J. Am. Chem. Soc. 1998, 120, 11408-11418.
33. Monzani, E.; Koolhaas, G. J. A. A.; Spandre, A.; Leggieri, E.; Casella, L.; Gullotti, M.; Nardin, G.; Randaccio, L.; Fontani, M.; Zanello, P.; Reedijk, J. J. Biol. Inorg. Chem. 2000, 5, 251-261.
34. Scarpellini, M.; Neves, A.; Castellano, E. E.; de Almeida Neves, E. F.; Franco, D. W. Polyhedron 2004, 23, 511-518.
35. Yokoyama, H.; Yamaguchi, K.; Sugimoto, M.; Suzuki, S. Eur. J. Inorg. Chem. 2005, 1435-1441.
36. Halfen, J. A.; Mahapatra, S.; Olmstead, M. M.; Tolman, W. B. J. Am. Chem. Soc. 1994, 116, 2173-2174.
37. Halfen, J. A.; Tolman, W. B. J. Am. Chem. Soc. 1994, 116, 5475-5476.
38. Halfen, J. A.; Mahapatra, S.; Wilkinson, E. C.; Gengenbach, A. J.; Young, V. G., Jr.; Que, L., Jr.; Tolman, W. B. J. Am. Chem. Soc. 1996, 118, 763-776.
39. Kujime, M.; Fujii, H. Angew. Chem., Int. Ed. 2006, 45, 1089-1092.
40. Tocheva, E. I.; Rosell, F. I.; Mauk, A. G.; Murphy, M. E. Biochemistry 2007, 46, 12366-12374.
41. Kujime, M.; Fujii, H. Tetrahedron Lett. 2005, 46, 2809-2812.
42. Kujime, M.; Kurahashi, T.; Tomura, M.; Fujii, H. Inorg. Chem. 2007, 46, 541-551.
43. Hitchman, M. A.; Rowbottom, G. L. Coord. Chem. Rev. 1982, 42, 55-132.
44. Ambundo, E.; Deydier, M.-V.; Grall, A. J.; Aguera-Vega, N.; Dressel, L. T.; Cooper, T. H.; Heeg, M. J.; Ochrymowycz, L. A.; Rorabacher, D. B. Inorg. Chem. 1999, 38, 4233-4242.
45. (a) Adachi, H.; Sonoki, H.; Hoshino, M.; Wakasa, M.; Hayashi, H.; Miyazaki, Y. J. Phys. Chem. A 2001, 105, 392-398.
46. (b) Tsai, A.-L. FEBS Lett. 1994, 341, 141-145.
47. Wayland, B. B.; Olson, L. W. J. Am. Chem. Soc. 1974, 96, 6037-6041.
48. (a) Martell, A. E.; Smith, R. M. Critical Stability Constants; Plenum Press: New York; Vol. I-III.
49. (b) Albert, A. In Physical Methods in Heterocyclic Chemistry; Katritzky, A. R., Ed.; Academic Press: New York, 1971; Vol. III, pp 1-108.
50. (c) Yang, R.; Zompa, L. J. Inorg. Chem. 1976, 15, 1499-1502.
51. (a) Zhang, H.; Boulanger, M. J.; Mauk, A. G.; Murphy, M. E. P. J. Phys. Chem. B 2000, 104, 10738-10742.
52. (b) Averill, B. A.; Wang, Y.; Ka, J. O.; Roublevskaia, I. N.; Tiedje, J. M. In Biological Electron Transfer Chains: Genetics, Composition and Mode of Operation; Vijgenboom, G. W. C. E., Ed.; Kluwer Academic Publications: Dordecht, The Netherlands, 1998; pp 185-196.
53. Scheidt, W. R.; Duval, H. F.; Neal, T. J.; Ellison, M. K. J. Am. Chem. Soc. 2000, 122, 4651-4659.
54. Julia, S.; del Mazo, J.; Avila, L. Org. Prep. Proc. Int. 1984, 16, 299-307.
55. Altomare, A.; Cascarano, G.; Giacovazzo, C.; Guagliardi, A.; Burla, M. C.; Polidoli, G.; Camalli, M. J. Appl. Crystallogr. 1994, 27, 435.
56. Beurskens, P. T.; Admiraal, G.; Beurskens, G.; Bosman, W. P.; de Gelder, R.; Israel, R.; Smits, J. M. M. The DIRDIF-94 Program System; Technical Report for the Crystallography Laboratory; University of Nijmegen: Nijmegen, The Netherlands, 1994.
57. Frisch, M. J. Gaussian03, revision C.03; Gaussian, Inc.: Wallingford, CT, 2004.
58. Wachters, A. J. H. J. Chem. Phys. 1970, 52, 1033.
59. Dennington, R., II; Keith, T.; Millam, J.; Eppinnett, K.; Hovell, W. L.; Gilliland, R. Semichem, Inc., Shawnee Mission, KS, 2003.