-
1
-
-
31444455638
-
Novel 2D maps and coupling numbers for protein sequences. the first QSAR study of polygalacturonases; Isolation and prediction of a novel sequence from Psidium guajava L
-
Aguero-Chapin G, Gonzalez-Diaz H, Molina R, Varona-Santos J, Uriarte E, Gonzalez-Diaz Y (2006) Novel 2D maps and coupling numbers for protein sequences. The first QSAR study of polygalacturonases; isolation and prediction of a novel sequence from Psidium guajava L. FEBS Lett 580:723-730
-
(2006)
FEBS Lett
, vol.580
, pp. 723-730
-
-
Aguero-Chapin, G.1
Gonzalez-Diaz, H.2
Molina, R.3
Varona-Santos, J.4
Uriarte, E.5
Gonzalez-Diaz, Y.6
-
2
-
-
25444524842
-
PSSM-based prediction of DNA binding sites in proteins
-
Ahmad S, Sarai A (2005) PSSM-based prediction of DNA binding sites in proteins. BMC Bioinformatics 6:33
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 33
-
-
Ahmad, S.1
Sarai, A.2
-
3
-
-
1542400269
-
Analysis and prediction of DNA-binding proteins and their binding residues based on composition, sequence and structural information
-
Ahmad S, Gromiha MM, Sarai A (2004) Analysis and prediction of DNA-binding proteins and their binding residues based on composition, sequence and structural information. Bioinformatics 20:477-486
-
(2004)
Bioinformatics
, vol.20
, pp. 477-486
-
-
Ahmad, S.1
Gromiha, M.M.2
Sarai, A.3
-
4
-
-
29144504328
-
Kernel-based machine learning protocol for predicting DNA-binding proteins
-
Bhardwaj N, Langlois RE, Zhao G, Lu H (2005) Kernel-based machine learning protocol for predicting DNA-binding proteins. Nucleic Acids Res 33:6486-6493
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 6486-6493
-
-
Bhardwaj, N.1
Langlois, R.E.2
Zhao, G.3
Lu, H.4
-
5
-
-
34250845013
-
Proteometric study of ghrelin receptor function variations upon mutations using amino acid sequence autocorrelation vectors and genetic algorithm-based least square support vector machines
-
Caballero J, Fernandez L, Garriga M, Abreu JI, Collina S, Fernandez M (2007) Proteometric study of ghrelin receptor function variations upon mutations using amino acid sequence autocorrelation vectors and genetic algorithm-based least square support vector machines. J Mol Graph Model 26:166-178
-
(2007)
J Mol Graph Model
, vol.26
, pp. 166-178
-
-
Caballero, J.1
Fernandez, L.2
Garriga, M.3
Abreu, J.I.4
Collina, S.5
Fernandez, M.6
-
6
-
-
29244482784
-
Predicting membrane protein type by functional domain composition and pseudo amino acid composition
-
Cai YD, Chou KC (2006) Predicting membrane protein type by functional domain composition and pseudo amino acid composition. J Theor Biol 238:395-400
-
(2006)
J Theor Biol
, vol.238
, pp. 395-400
-
-
Cai, Y.D.1
Chou, K.C.2
-
7
-
-
33750475941
-
Using pseudo-amino acid composition and support vector machine to predict protein structural class
-
Chen C, Tian YX, Zou XY, Cai PX, Mo JY (2006a) Using pseudo-amino acid composition and support vector machine to predict protein structural class. J Theor Biol 243:444-448
-
(2006)
J Theor Biol
, vol.243
, pp. 444-448
-
-
Chen, C.1
Tian, Y.X.2
Zou, X.Y.3
Cai, P.X.4
Mo, J.Y.5
-
8
-
-
33748287103
-
Predicting protein structural class with pseudo-amino acid composition and support vector machine fusion network
-
Chen C, Zhou X, Tian Y, Zou X, Cai P (2006b) Predicting protein structural class with pseudo-amino acid composition and support vector machine fusion network. Anal Biochem 357:116-121
-
(2006)
Anal Biochem
, vol.357
, pp. 116-121
-
-
Chen, C.1
Zhou, X.2
Tian, Y.3
Zou, X.4
Cai, P.5
-
9
-
-
34548301416
-
Prediction of linear B-cell epitopes using amino acid pair antigenicity scale
-
Chen J, Liu H, Yang J, Chou KC (2007) Prediction of linear B-cell epitopes using amino acid pair antigenicity scale. Amino Acids 33:423-428
-
(2007)
Amino Acids
, vol.33
, pp. 423-428
-
-
Chen, J.1
Liu, H.2
Yang, J.3
Chou, K.C.4
-
10
-
-
34548009150
-
Prediction of apoptosis protein subcellular location using improved hybrid approach and pseudo amino acid composition
-
Chen YL, Li QZ (2007a) Prediction of apoptosis protein subcellular location using improved hybrid approach and pseudo amino acid composition. J Theor Biol 248:377-381
-
(2007)
J Theor Biol
, vol.248
, pp. 377-381
-
-
Chen, Y.L.1
Li, Q.Z.2
-
11
-
-
33947390931
-
Prediction of the subcellular location of apoptosis proteins
-
Chen YL, Li QZ (2007b) Prediction of the subcellular location of apoptosis proteins. J Theor Biol 245:775-783
-
(2007)
J Theor Biol
, vol.245
, pp. 775-783
-
-
Chen, Y.L.1
Li, Q.Z.2
-
12
-
-
0034687538
-
Prediction of protein subcellular locations by incorporating quasi-sequence-order effect
-
Chou KC (2000a) Prediction of protein subcellular locations by incorporating quasi-sequence-order effect. Biochem Biophys Res Commun 278:477-483
-
(2000)
Biochem Biophys Res Commun
, vol.278
, pp. 477-483
-
-
Chou, K.C.1
-
13
-
-
0034285487
-
Review: Prediction of protein structural classes and subcellular locations, Curr
-
Chou KC (2000b) Review: prediction of protein structural classes and subcellular locations, Curr. Protein Pept Sci 1:171-208
-
(2000)
Protein Pept Sci
, vol.1
, pp. 171-208
-
-
Chou, K.C.1
-
14
-
-
0035874091
-
Prediction of protein cellular attributes using pseudo amino acid composition
-
(Erratum: ibid., 2001, Vol.44, 60)
-
Chou KC (2001) Prediction of protein cellular attributes using pseudo amino acid composition. Proteins 43:246-255 (Erratum: ibid., 2001, Vol.44, 60)
-
(2001)
Proteins
, vol.43
, pp. 246-255
-
-
Chou, K.C.1
-
15
-
-
12744279642
-
Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes
-
Chou KC (2005) Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes. Bioinformatics 21:10-19
-
(2005)
Bioinformatics
, vol.21
, pp. 10-19
-
-
Chou, K.C.1
-
16
-
-
3142779931
-
Prediction of protein subcellular locations by GO-FunD-PseAA predictor
-
Chou KC, Cai YD (2004) Prediction of protein subcellular locations by GO-FunD-PseAA predictor, Biochem Biophys Res Commun 320:1236-1239
-
(2004)
Biochem Biophys Res Commun
, vol.320
, pp. 1236-1239
-
-
Chou, K.C.1
Cai, Y.D.2
-
17
-
-
33745759451
-
Hum-PLoc: A novel ensemble classifier for predicting human protein subcellular localization
-
Chou KC, Shen HB (2006a) Hum-PLoc: a novel ensemble classifier for predicting human protein subcellular localization. Biochem Biophys Res Commun 347:150-157
-
(2006)
Biochem Biophys Res Commun
, vol.347
, pp. 150-157
-
-
Chou, K.C.1
Shen, H.B.2
-
18
-
-
33845423991
-
Large-scale predictions of Gram-negative bacterial protein subcellular locations
-
Chou KC, Shen HB (2006b) Large-scale predictions of Gram-negative bacterial protein subcellular locations. J Proteome Res 5:3420-3428
-
(2006)
J Proteome Res
, vol.5
, pp. 3420-3428
-
-
Chou, K.C.1
Shen, H.B.2
-
19
-
-
34249318001
-
Euk-mPLoc: A fusion classifier for large-scale eukaryotic protein subcellular location prediction by incorporating multiple sites
-
Chou KC, Shen HB (2007a) Euk-mPLoc: a fusion classifier for large-scale eukaryotic protein subcellular location prediction by incorporating multiple sites. J Proteome Res 6:1728-1734
-
(2007)
J Proteome Res
, vol.6
, pp. 1728-1734
-
-
Chou, K.C.1
Shen, H.B.2
-
20
-
-
33846605183
-
Large-scale plant protein subcellular location prediction
-
Chou KC, Shen HB (2007b) Large-scale plant protein subcellular location prediction. J Cell Biochem 100:665-678
-
(2007)
J Cell Biochem
, vol.100
, pp. 665-678
-
-
Chou, K.C.1
Shen, H.B.2
-
21
-
-
34447095147
-
MemType-2L: A Web server for predicting membrane proteins and their types by incorporating evolution information through Pse-PSSM
-
Chou KC, Shen HB (2007c) MemType-2L: a Web server for predicting membrane proteins and their types by incorporating evolution information through Pse-PSSM. Biochem Biophys Res Commun 360:339-345
-
(2007)
Biochem Biophys Res Commun
, vol.360
, pp. 339-345
-
-
Chou, K.C.1
Shen, H.B.2
-
22
-
-
34548606295
-
Review: Recent progresses in protein subcellular location prediction
-
Chou KC, Shen HB (2007d) Review: recent progresses in protein subcellular location prediction. Anal Biochem 370:1-16
-
(2007)
Anal Biochem
, vol.370
, pp. 1-16
-
-
Chou, K.C.1
Shen, H.B.2
-
23
-
-
34247544233
-
Signal-CF: A subsite-coupled and window-fusing approach for predicting signal peptides
-
Chou KC, Shen HB (2007e) Signal-CF: a subsite-coupled and window-fusing approach for predicting signal peptides. Biochem Biophys Res Commun 357:633-640
-
(2007)
Biochem Biophys Res Commun
, vol.357
, pp. 633-640
-
-
Chou, K.C.1
Shen, H.B.2
-
24
-
-
0029157083
-
Review: Prediction of protein structural classes
-
Chou KC, Zhang CT (1995) Review: prediction of protein structural classes. Crit Rev Biochem Mol Biol 30:275-349
-
(1995)
Crit Rev Biochem Mol Biol
, vol.30
, pp. 275-349
-
-
Chou, K.C.1
Zhang, C.T.2
-
26
-
-
29644438050
-
Statistical comparisons of classifiers over multiple data sets
-
Demsar J (2006) Statistical comparisons of classifiers over multiple data sets. J Mach Learn Res 7:1-30
-
(2006)
J Mach Learn Res
, vol.7
, pp. 1-30
-
-
Demsar, J.1
-
27
-
-
34447500056
-
The community structure of human cellular signaling network
-
Diao Y, Li M, Feng Z, Yin J, Pan Y (2007a) The community structure of human cellular signaling network. J Theor Biol 247:608-615
-
(2007)
J Theor Biol
, vol.247
, pp. 608-615
-
-
Diao, Y.1
Li, M.2
Feng, Z.3
Yin, J.4
Pan, Y.5
-
28
-
-
38149118953
-
Using pseudo amino acid composition to predict transmembrane regions in protein: Cellular automata and Lempel-Ziv complexity
-
doi: 10.1007/s00726-007-0550-z
-
Diao Y, Ma D, Wen Z, Yin J, Xiang J, Li M (2007b) Using pseudo amino acid composition to predict transmembrane regions in protein: cellular automata and Lempel-Ziv complexity. Amino Acids. doi: 10.1007/s00726-007-0550-z
-
(2007)
Amino Acids
-
-
Diao, Y.1
Ma, D.2
Wen, Z.3
Yin, J.4
Xiang, J.5
Li, M.6
-
29
-
-
34548697717
-
Prediction of protein structure classes with pseudo amino acid composition and fuzzy support vector machine network
-
Ding YS, Zhang TL, Chou KC (2007) Prediction of protein structure classes with pseudo amino acid composition and fuzzy support vector machine network. Protein Pept Lett 14:811-815
-
(2007)
Protein Pept Lett
, vol.14
, pp. 811-815
-
-
Ding, Y.S.1
Zhang, T.L.2
Chou, K.C.3
-
30
-
-
33846010187
-
Prediction of protein submitochondria locations by hybridizing pseudo-amino acid composition with various physicochemical features of segmented sequence
-
Du P, Li Y (2006) Prediction of protein submitochondria locations by hybridizing pseudo-amino acid composition with various physicochemical features of segmented sequence. BMC Bioinformatics 7:518
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 518
-
-
Du, P.1
Li, Y.2
-
32
-
-
38149007012
-
Predicting DNA-binding proteins: Approached from Chou's pseudo amino acid composition and other specific sequence features
-
doi: 10.1007/s00726-007-0568-2
-
Fang Y, Guo Y, Feng Y, Li M (2007) Predicting DNA-binding proteins: approached from Chou's pseudo amino acid composition and other specific sequence features. Amino Acids. doi: 10.1007/s00726-007-0568-2
-
(2007)
Amino Acids
-
-
Fang, Y.1
Guo, Y.2
Feng, Y.3
Li, M.4
-
34
-
-
0036459850
-
An overview on predicting the subcellular location of a protein.
-
Feng ZP (2002) An overview on predicting the subcellular location of a protein. In Silico Biology 2:291-303
-
(2002)
In Silico Biology
, vol.2
, pp. 291-303
-
-
Feng, Z.P.1
-
35
-
-
21244494076
-
Using pseudo amino acid composition to predict protein subcellular location: Approached with Lyapunov index, Bessel function, and Chebyshev filter
-
Gao Y, Shao SH, Xiao X, Ding YS, Huang YS, Huang ZD, Chou KC (2005) Using pseudo amino acid composition to predict protein subcellular location: approached with Lyapunov index, Bessel function, and Chebyshev filter. Amino Acids 28:373-376
-
(2005)
Amino Acids
, vol.28
, pp. 373-376
-
-
Gao, Y.1
Shao, S.H.2
Xiao, X.3
Ding, Y.S.4
Huang, Y.S.5
Huang, Z.D.6
Chou, K.C.7
-
37
-
-
33947725480
-
2D-RNA-coupling numbers: A new computational chemistry approach to link secondary structure topology with biological function
-
Gonzalez-Diaz H, Aguero-Chapin G, Varona J, Molina R, Delogu G, Santana L, Uriarte E, Podda G (2007a) 2D-RNA-coupling numbers: a new computational chemistry approach to link secondary structure topology with biological function. J Comput Chem 28:1049-1056
-
(2007)
J Comput Chem
, vol.28
, pp. 1049-1056
-
-
Gonzalez-Diaz, H.1
Aguero-Chapin, G.2
Varona, J.3
Molina, R.4
Delogu, G.5
Santana, L.6
Uriarte, E.7
Podda, G.8
-
38
-
-
34547347534
-
Computational chemistry comparison of stable/nonstable protein mutants classification models based on 3D and topological indices
-
Gonzalez-Diaz H, Perez-Castillo Y, Podda G, Uriarte E (2007b) Computational chemistry comparison of stable/nonstable protein mutants classification models based on 3D and topological indices. J Comput Chem 28:1990-1995
-
(2007)
J Comput Chem
, vol.28
, pp. 1990-1995
-
-
Gonzalez-Diaz, H.1
Perez-Castillo, Y.2
Podda, G.3
Uriarte, E.4
-
39
-
-
34447254270
-
Medicinal chemistry and bioinformatics-current trends in drugs discovery with networks topological indices
-
Gonzalez-Diaz H, Vilar S, Santana L, Uriarte E (2007c) Medicinal chemistry and bioinformatics-current trends in drugs discovery with networks topological indices. Curr Top Med Chem 10:1015-1029
-
(2007)
Curr Top Med Chem
, vol.10
, pp. 1015-1029
-
-
Gonzalez-Diaz, H.1
Vilar, S.2
Santana, L.3
Uriarte, E.4
-
40
-
-
33745102264
-
Classifying G protein-coupled receptors and nuclear receptors based on protein power spectrum from fast Fourier transform
-
Guo YZ, Li M, Lu M, Wen Z, Wang K, Li G, Wu J (2006) Classifying G protein-coupled receptors and nuclear receptors based on protein power spectrum from fast Fourier transform. Amino Acids 30:397-402
-
(2006)
Amino Acids
, vol.30
, pp. 397-402
-
-
Guo, Y.Z.1
Li, M.2
Lu, M.3
Wen, Z.4
Wang, K.5
Li, G.6
Wu, J.7
-
41
-
-
0032139235
-
The random subspace method for constructing decision forests.
-
Ho TK (1998) The random subspace method for constructing decision forests. IEEE Trans Pattern Anal Mach Intell 8:832-844
-
(1998)
IEEE Trans Pattern Anal Mach Intell
, vol.8
, pp. 832-844
-
-
Ho, T.K.1
-
42
-
-
0346258292
-
Using electrostatic potentials to predict DNA-binding sites on DNA-binding proteins
-
Jones S, Shanahan HP, Berman HM, Thornton JM (2003) Using electrostatic potentials to predict DNA-binding sites on DNA-binding proteins. Nucleic Acids Res 31:7189-7198
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 7189-7198
-
-
Jones, S.1
Shanahan, H.P.2
Berman, H.M.3
Thornton, J.M.4
-
43
-
-
33747182577
-
Classifier ensembles for protein structural class prediction with varying homology
-
Kedarisetti KD, Kurgan LA, Dick S (2006) Classifier ensembles for protein structural class prediction with varying homology. Biochem Biophys Res Commun 348:981-988
-
(2006)
Biochem Biophys Res Commun
, vol.348
, pp. 981-988
-
-
Kedarisetti, K.D.1
Kurgan, L.A.2
Dick, S.3
-
44
-
-
1942422617
-
Pattern recognition strategies for molecular surfaces: III. Binding site prediction with a neural network
-
Keil M, Exner TE, Brickmann J (2004) Pattern recognition strategies for molecular surfaces: III. Binding site prediction with a neural network. J Comput Chem 25:779-789
-
(2004)
J Comput Chem
, vol.25
, pp. 779-789
-
-
Keil, M.1
Exner, T.E.2
Brickmann, J.3
-
46
-
-
0037403516
-
Measures of diversity in classifier ensembles and their relationship with the ensemble accuracy
-
Kuncheva LI, Whitaker CJ (2003) Measures of diversity in classifier ensembles and their relationship with the ensemble accuracy. Mach Learn 51:181-207
-
(2003)
Mach Learn
, vol.51
, pp. 181-207
-
-
Kuncheva, L.I.1
Whitaker, C.J.2
-
47
-
-
34548035196
-
Novel scales based on hydrophobicity indices for secondary protein structure
-
Kurgan LA, Stach W, Ruan J (2007) Novel scales based on hydrophobicity indices for secondary protein structure. J Theor Biol 248:354-366
-
(2007)
J Theor Biol
, vol.248
, pp. 354-366
-
-
Kurgan, L.A.1
Stach, W.2
Ruan, J.3
-
48
-
-
33744817325
-
Using evolutionary and structural information to predict DNA-binding sites on DNA-binding proteins
-
Kuznetsov I, Gou Z, Li R, Hwang S (2006) Using evolutionary and structural information to predict DNA-binding sites on DNA-binding proteins. Proteins 64:19-27
-
(2006)
Proteins
, vol.64
, pp. 19-27
-
-
Kuznetsov, I.1
Gou, Z.2
Li, R.3
Hwang, S.4
-
49
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, FitzHugh W et al (2001) Initial sequencing and analysis of the human genome. Nature 409:860-921
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
Baldwin, J.6
Devon, K.7
Dewar, K.8
Doyle, M.9
Fitzhugh, W.10
-
50
-
-
38149120433
-
Using pseudo amino acid composition to predict protein subnuclear location with improved hybrid approach
-
doi: 10.1007/s00726-007-0545-9
-
Li FM, Li QZ (2007) Using pseudo amino acid composition to predict protein subnuclear location with improved hybrid approach. Amino Acids. doi: 10.1007/s00726-007-0545-9
-
(2007)
Amino Acids
-
-
Li, F.M.1
Li, Q.Z.2
-
51
-
-
33846524311
-
Predicting conotoxin superfamily and family by using pseudo amino acid composition and modified Mahalanobis discriminant
-
Lin H, Li QZ (2007a) Predicting conotoxin superfamily and family by using pseudo amino acid composition and modified Mahalanobis discriminant. Biochem Biophys Res Commun 354:548-551
-
(2007)
Biochem Biophys Res Commun
, vol.354
, pp. 548-551
-
-
Lin, H.1
Li, Q.Z.2
-
52
-
-
34249807035
-
Using pseudo amino acid composition to predict protein structural class: Approached by incorporating 400 dipeptide components
-
Lin H, Li QZ (2007b) Using pseudo amino acid composition to predict protein structural class: approached by incorporating 400 dipeptide components. J Comput Chem 28:1463-1466
-
(2007)
J Comput Chem
, vol.28
, pp. 1463-1466
-
-
Lin, H.1
Li, Q.Z.2
-
53
-
-
34249051980
-
Predicting secretory protein signal sequence cleavage sites by fusing the marks of global alignments
-
Liu DQ, Liu H, Shen HB, Yang J, Chou KC (2007) Predicting secretory protein signal sequence cleavage sites by fusing the marks of global alignments. Amino Acids 32:493-496
-
(2007)
Amino Acids
, vol.32
, pp. 493-496
-
-
Liu, D.Q.1
Liu, H.2
Shen, H.B.3
Yang, J.4
Chou, K.C.5
-
54
-
-
25144470285
-
Low-frequency Fourier spectrum for predicting membrane protein types
-
Liu H, Wang M, Chou KC (2005a) Low-frequency Fourier spectrum for predicting membrane protein types. Biochem Biophys Res Commun 336:737-739
-
(2005)
Biochem Biophys Res Commun
, vol.336
, pp. 737-739
-
-
Liu, H.1
Wang, M.2
Chou, K.C.3
-
55
-
-
28444431990
-
Using Fourier spectrum analysis and pseudo amino acid composition for prediction of membrane protein types
-
Liu H, Yang J, Wang M, Xue L, Chou KC (2005b) Using Fourier spectrum analysis and pseudo amino acid composition for prediction of membrane protein types. Prot J 24:385-389
-
(2005)
Prot J
, vol.24
, pp. 385-389
-
-
Liu, H.1
Yang, J.2
Wang, M.3
Xue, L.4
Chou, K.C.5
-
56
-
-
85046873967
-
The DET curve in assessment of decision task performance
-
Martin A et al (1997) The DET curve in assessment of decision task performance. In: Proc. of EuroSpeech, pp 1895-1898
-
(1997)
Proc. of EuroSpeech
, pp. 1895-1898
-
-
Martin, A.1
-
57
-
-
33749596030
-
Pseudo amino acid composition and multi-class support vector machines approach for conotoxin superfamily classification
-
Mondal S, Bhavna R, Mohan Babu R, Ramakumar S (2006) Pseudo amino acid composition and multi-class support vector machines approach for conotoxin superfamily classification. J Theor Biol 243:252-260
-
(2006)
J Theor Biol
, vol.243
, pp. 252-260
-
-
Mondal, S.1
Bhavna, R.2
Mohan Babu, R.3
Ramakumar, S.4
-
58
-
-
34447321808
-
Using pseudo amino acid composition to predict protein subnuclear localization: Approached with PSSM
-
Mundra P, Kumar M, Kumar KK, Jayaraman VK, Kulkarni BD (2007) Using pseudo amino acid composition to predict protein subnuclear localization: approached with PSSM. Pattern Recognit Lett 28:1610-1615
-
(2007)
Pattern Recognit Lett
, vol.28
, pp. 1610-1615
-
-
Mundra, P.1
Kumar, M.2
Kumar, K.K.3
Jayaraman, V.K.4
Kulkarni, B.D.5
-
59
-
-
33646871614
-
An ensemble of K-local hyperplane for predicting protein-protein interactions
-
Nanni L, Lumini A (2006a) An ensemble of K-local hyperplane for predicting protein-protein interactions, Bioinformatics 22:1207-1210
-
(2006)
Bioinformatics
, vol.22
, pp. 1207-1210
-
-
Nanni, L.1
Lumini, A.2
-
60
-
-
33745190057
-
MppS: An ensemble of Support Vector Machine based on multiple physicochemical properties of amino-acids
-
Nanni L, Lumini A (2006b) MppS: an ensemble of Support Vector Machine based on multiple physicochemical properties of amino-acids, Neurocomputing 69:1688-1690
-
(2006)
Neurocomputing
, vol.69
, pp. 1688-1690
-
-
Nanni, L.1
Lumini, A.2
-
61
-
-
33646393287
-
Predicting protein structural class with AdaBoost learner
-
Niu B, Cai YD, Lu WC, Zheng GY, Chou KC (2006) Predicting protein structural class with AdaBoost learner. Protein Pept Lett 13:489-492
-
(2006)
Protein Pept Lett
, vol.13
, pp. 489-492
-
-
Niu, B.1
Cai, Y.D.2
Lu, W.C.3
Zheng, G.Y.4
Chou, K.C.5
-
62
-
-
0042885957
-
Application of pseudo amino acid composition for predicting protein subcellular location: Stochastic signal processing approach
-
Pan YX, Zhang ZZ, Guo ZM, Feng GY, Huang ZD, He L (2003) Application of pseudo amino acid composition for predicting protein subcellular location: stochastic signal processing approach. J Protein Chem 22:395-402
-
(2003)
J Protein Chem
, vol.22
, pp. 395-402
-
-
Pan, Y.X.1
Zhang, Z.Z.2
Guo, Z.M.3
Feng, G.Y.4
Huang, Z.D.5
He, L.6
-
63
-
-
34249776374
-
Prediction of membrane protein types from sequences and position-specific scoring matrices
-
Pu X, Guo J, Leung H, Lin Y (2007) Prediction of membrane protein types from sequences and position-specific scoring matrices. J Theor Biol 247:259-265
-
(2007)
J Theor Biol
, vol.247
, pp. 259-265
-
-
Pu, X.1
Guo, J.2
Leung, H.3
Lin, Y.4
-
64
-
-
0029984070
-
Improving prediction of protein secondary structure using neural networks and multiple sequence alignments
-
Riis SK, Krogh A (1996) Improving prediction of protein secondary structure using neural networks and multiple sequence alignments. J Comput Biol 3:163-183
-
(1996)
J Comput Biol
, vol.3
, pp. 163-183
-
-
Riis, S.K.1
Krogh, A.2
-
65
-
-
4444343959
-
Identifying DNA-binding proteins using structural motifs and the electrostatic potential
-
Shanahan HP, Garcia MA, Jones S, Thornton JM (2004) Identifying DNA-binding proteins using structural motifs and the electrostatic potential. Nucleic Acids Res 32:4732-4741
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 4732-4741
-
-
Shanahan, H.P.1
Garcia, M.A.2
Jones, S.3
Thornton, J.M.4
-
66
-
-
26844455291
-
Predicting protein subnuclear location with optimized evidence-theoretic K-nearest classifier and pseudo amino acid composition
-
Shen HB, Chou KC (2005a) Predicting protein subnuclear location with optimized evidence-theoretic K-nearest classifier and pseudo amino acid composition. Biochem Biophys Res Commun 337:752-756
-
(2005)
Biochem Biophys Res Commun
, vol.337
, pp. 752-756
-
-
Shen, H.B.1
Chou, K.C.2
-
67
-
-
22144487766
-
Using optimized evidence-theoretic K-nearest neighbor classifier and pseudo amino acid composition to predict membrane protein types
-
Shen HB, Chou KC (2005b) Using optimized evidence-theoretic K-nearest neighbor classifier and pseudo amino acid composition to predict membrane protein types. Biochem Biophys Res Commun 334:288-292
-
(2005)
Biochem Biophys Res Commun
, vol.334
, pp. 288-292
-
-
Shen, H.B.1
Chou, K.C.2
-
68
-
-
33747880465
-
Ensemble classifier for protein fold pattern recognition
-
Shen HB, Chou KC (2006) Ensemble classifier for protein fold pattern recognition. Bioinformatics 22:1717-1722
-
(2006)
Bioinformatics
, vol.22
, pp. 1717-1722
-
-
Shen, H.B.1
Chou, K.C.2
-
69
-
-
35348973511
-
EzyPred: A top-down approach for predicting enzyme functional classes and subclasses
-
Shen HB, Chou KC (2007a) EzyPred: a top-down approach for predicting enzyme functional classes and subclasses. Biochem Biophys Res Commun 364:53-59
-
(2007)
Biochem Biophys Res Commun
, vol.364
, pp. 53-59
-
-
Shen, H.B.1
Chou, K.C.2
-
70
-
-
33847080827
-
Gpos-PLoc: An ensemble classifier for predicting subcellular localization of Gram-positive bacterial proteins
-
Shen HB, Chou KC (2007b) Gpos-PLoc: an ensemble classifier for predicting subcellular localization of Gram-positive bacterial proteins. Protein Eng Des Sel 20:39-46
-
(2007)
Protein Eng des Sel
, vol.20
, pp. 39-46
-
-
Shen, H.B.1
Chou, K.C.2
-
71
-
-
33847668306
-
Hum-mPLoc: An ensemble classifier for large-scale human protein subcellular location prediction by incorporating samples with multiple sites
-
Shen HB, Chou KC (2007c) Hum-mPLoc: an ensemble classifier for large-scale human protein subcellular location prediction by incorporating samples with multiple sites. Biochem Biophys Res Commun 355:1006-1011
-
(2007)
Biochem Biophys Res Commun
, vol.355
, pp. 1006-1011
-
-
Shen, H.B.1
Chou, K.C.2
-
72
-
-
36448952353
-
Nuc-PLoc: A new web-server for predicting protein subnuclear localization by fusing PseAA composition and PsePSSM
-
Shen HB, Chou KC (2007d) Nuc-PLoc: a new web-server for predicting protein subnuclear localization by fusing PseAA composition and PsePSSM. Protein Eng Des Sel 20:561-567
-
(2007)
Protein Eng des Sel
, vol.20
, pp. 561-567
-
-
Shen, H.B.1
Chou, K.C.2
-
73
-
-
37549004451
-
PseAAC: A flexible web-server for generating various kinds of protein pseudo amino acid composition
-
doi: 10.10.1016/j.ab.2007.10.012
-
Shen HB, Chou KC (2007e) PseAAC: a flexible web-server for generating various kinds of protein pseudo amino acid composition. Anal Biochem. doi: 10.10.1016/j.ab.2007.10.012
-
(2007)
Anal Biochem
-
-
Shen, H.B.1
Chou, K.C.2
-
74
-
-
34748902270
-
Signal-3L: A 3-layer approach for predicting signal peptide
-
Shen HB, Chou KC (2007f) Signal-3L: a 3-layer approach for predicting signal peptide. Biochem Biophys Res Commun 363:297-303
-
(2007)
Biochem Biophys Res Commun
, vol.363
, pp. 297-303
-
-
Shen, H.B.1
Chou, K.C.2
-
75
-
-
34249074523
-
Using ensemble classifier to identify membrane protein types
-
Shen HB, Chou KC (2007g) Using ensemble classifier to identify membrane protein types. Amino Acids 32:483-488
-
(2007)
Amino Acids
, vol.32
, pp. 483-488
-
-
Shen, H.B.1
Chou, K.C.2
-
76
-
-
33847260136
-
Virus-PLoc: A fusion classifier for predicting the subcellular localization of viral proteins within host and virus-infected cells
-
Shen HB, Chou KC (2007h) Virus-PLoc: a fusion classifier for predicting the subcellular localization of viral proteins within host and virus-infected cells. Biopolymers 85:233-240
-
(2007)
Biopolymers
, vol.85
, pp. 233-240
-
-
Shen, H.B.1
Chou, K.C.2
-
77
-
-
33748150984
-
Fuzzy KNN for predicting membrane protein types from pseudo amino acid composition
-
Shen HB, Yang J, Chou KC (2006) Fuzzy KNN for predicting membrane protein types from pseudo amino acid composition. J Theor Biol 240:9-13
-
(2006)
J Theor Biol
, vol.240
, pp. 9-13
-
-
Shen, H.B.1
Yang, J.2
Chou, K.C.3
-
78
-
-
33847637338
-
Euk-PLoc: An ensemble classifier for large-scale eukaryotic protein subcellular location prediction
-
Shen HB, Yang J, Chou KC (2007) Euk-PLoc: an ensemble classifier for large-scale eukaryotic protein subcellular location prediction. Amino Acids 33:57-67
-
(2007)
Amino Acids
, vol.33
, pp. 57-67
-
-
Shen, H.B.1
Yang, J.2
Chou, K.C.3
-
79
-
-
34447106453
-
Prediction of protein subcellular localization by support vector machines using multi-scale energy and pseudo amino acid composition
-
Shi JY, Zhang SW, Pan Q, Cheng Y-M, Xie J (2007) Prediction of protein subcellular localization by support vector machines using multi-scale energy and pseudo amino acid composition. Amino Acids 33:69-74
-
(2007)
Amino Acids
, vol.33
, pp. 69-74
-
-
Shi, J.Y.1
Zhang, S.W.2
Pan, Q.3
Cheng, Y.-M.4
Xie, J.5
-
80
-
-
33745093400
-
Prediction of protein structural classes using support vector machines
-
Sun XD, Huang RB (2006) Prediction of protein structural classes using support vector machines. Amino Acids 30:469-475
-
(2006)
Amino Acids
, vol.30
, pp. 469-475
-
-
Sun, X.D.1
Huang, R.B.2
-
81
-
-
36448969399
-
Prediction of mitochondrial proteins based on genetic algorithm-partial least squares and support vector machine
-
doi: 10.1007/s00726-006-0465-0
-
Tan F, Feng X, Fang Z, Li M, Guo Y, Jiang L (2007) Prediction of mitochondrial proteins based on genetic algorithm-partial least squares and support vector machine. Amino Acids. doi: 10.1007/s00726-006-0465-0
-
(2007)
Amino Acids
-
-
Tan, F.1
Feng, X.2
Fang, Z.3
Li, M.4
Guo, Y.5
Jiang, L.6
-
82
-
-
2542557409
-
Structure-based prediction of DNA-binding sites on proteins using the empirical preference of electrostatic potential and the shape of molecular surfaces
-
Tsuchiya Y, Kinoshita K, Nakamura H (2004) Structure-based prediction of DNA-binding sites on proteins using the empirical preference of electrostatic potential and the shape of molecular surfaces. Proteins 55:885-894
-
(2004)
Proteins
, vol.55
, pp. 885-894
-
-
Tsuchiya, Y.1
Kinoshita, K.2
Nakamura, H.3
-
83
-
-
8444248846
-
Weighted-support vector machines for predicting membrane protein types based on pseudo amino acid composition
-
Wang M, Yang J, Liu GP, Xu ZJ, Chou KC (2004) Weighted-support vector machines for predicting membrane protein types based on pseudo amino acid composition. Protein Eng Des Sel 17:509-516
-
(2004)
Protein Eng des Sel
, vol.17
, pp. 509-516
-
-
Wang, M.1
Yang, J.2
Liu, G.P.3
Xu, Z.J.4
Chou, K.C.5
-
84
-
-
21244494465
-
Using string kernel to predict signal peptide cleavage site based on subsite coupling model
-
(Erratum, ibid. 2005, 29:301)
-
Wang M, Yang J, Chou KC (2005) Using string kernel to predict signal peptide cleavage site based on subsite coupling model. Amino Acids (Erratum, ibid. 2005, 29:301) 28:395-402
-
(2005)
Amino Acids
, vol.28
, pp. 395-402
-
-
Wang, M.1
Yang, J.2
Chou, K.C.3
-
85
-
-
33748449804
-
Using stacked generalization to predict membrane protein types based on pseudo amino acid composition
-
Wang SQ, Yang J, Chou KC (2006) Using stacked generalization to predict membrane protein types based on pseudo amino acid composition. J Theor Biol 242:941-946
-
(2006)
J Theor Biol
, vol.242
, pp. 941-946
-
-
Wang, S.Q.1
Yang, J.2
Chou, K.C.3
-
86
-
-
33846655685
-
Delaunay triangulation with partial least squares projection to latent structures: A model for G-protein coupled receptors classification and fast structure recognition
-
Wen Z, Li M, Li Y, Guo Y, Wang K (2006) Delaunay triangulation with partial least squares projection to latent structures: a model for G-protein coupled receptors classification and fast structure recognition. Amino Acids 32:277-283
-
(2006)
Amino Acids
, vol.32
, pp. 277-283
-
-
Wen, Z.1
Li, M.2
Li, Y.3
Guo, Y.4
Wang, K.5
-
87
-
-
35548967965
-
Digital coding of amino acids based on hydrophobic index
-
Xiao X, Chou KC (2007) Digital coding of amino acids based on hydrophobic index. Protein Pept Lett 14:871-875
-
(2007)
Protein Pept Lett
, vol.14
, pp. 871-875
-
-
Xiao, X.1
Chou, K.C.2
-
88
-
-
15244357858
-
Using cellular automata to generate image representation for biological sequences
-
Xiao X, Shao S, Ding Y, Huang Z, Chen X, Chou KC (2005a) Using cellular automata to generate image representation for biological sequences. Amino Acids 28:29-35
-
(2005)
Amino Acids
, vol.28
, pp. 29-35
-
-
Xiao, X.1
Shao, S.2
Ding, Y.3
Huang, Z.4
Chen, X.5
Chou, K.C.6
-
89
-
-
15244350269
-
Using complexity measure factor to predict protein subcellular location
-
Xiao X, Shao S, Ding Y, Huang Z, Huang Y, Chou KC (2005b) Using complexity measure factor to predict protein subcellular location. Amino Acids 28:57-61
-
(2005)
Amino Acids
, vol.28
, pp. 57-61
-
-
Xiao, X.1
Shao, S.2
Ding, Y.3
Huang, Z.4
Huang, Y.5
Chou, K.C.6
-
90
-
-
32944461574
-
Using cellular automata images and pseudo amino acid composition to predict protein subcellular location
-
Xiao X, Shao SH, Ding YS, Huang ZD, Chou KC (2006a) Using cellular automata images and pseudo amino acid composition to predict protein subcellular location. Amino Acids 30:49-54
-
(2006)
Amino Acids
, vol.30
, pp. 49-54
-
-
Xiao, X.1
Shao, S.H.2
Ding, Y.S.3
Huang, Z.D.4
Chou, K.C.5
-
91
-
-
33644889341
-
Using pseudo amino acid composition to predict protein structural classes: Approached with complexity measure factor
-
Xiao X, Shao SH, Huang ZD, Chou KC (2006b) Using pseudo amino acid composition to predict protein structural classes: approached with complexity measure factor. J Comput Chem 27:478-482
-
(2006)
J Comput Chem
, vol.27
, pp. 478-482
-
-
Xiao, X.1
Shao, S.H.2
Huang, Z.D.3
Chou, K.C.4
-
92
-
-
33745076136
-
Prediction protein homo-oligomer types by pseudo amino acid composition: Approached with an improved feature extraction and naive Bayes feature fusion
-
Zhang SW, Pan Q, Zhang HC, Shao ZC, Shi JY (2006a) Prediction protein homo-oligomer types by pseudo amino acid composition: approached with an improved feature extraction and naive Bayes feature fusion. Amino Acids 30:461-468
-
(2006)
Amino Acids
, vol.30
, pp. 461-468
-
-
Zhang, S.W.1
Pan, Q.2
Zhang, H.C.3
Shao, Z.C.4
Shi, J.Y.5
-
93
-
-
33748796057
-
Prediction of protein subcellular location using hydrophobic patterns of amino acid sequence
-
Zhang T, Ding Y, Chou KC (2006b) Prediction of protein subcellular location using hydrophobic patterns of amino acid sequence. Comput Biol Chem 30:367-371
-
(2006)
Comput Biol Chem
, vol.30
, pp. 367-371
-
-
Zhang, T.1
Ding, Y.2
Chou, K.C.3
-
94
-
-
43149104120
-
Using the concept of Chou's pseudo amino acid composition to predict protein subcellular localization: An approach by incorporating evolutionary information and von Neumann entropies
-
doi: 10.1007/s00726-007-0010-9
-
Zhang SW, Zhang YL, Yang HF, Zhao CH, Pan Q (2007) Using the concept of Chou's pseudo amino acid composition to predict protein subcellular localization: an approach by incorporating evolutionary information and von Neumann entropies. Amino Acids. doi: 10.1007/s00726-007-0010-9
-
(2007)
Amino Acids
-
-
Zhang, S.W.1
Zhang, Y.L.2
Yang, H.F.3
Zhao, C.H.4
Pan, Q.5
-
95
-
-
36448935288
-
Using pseudo amino acid composition and binary-tree support vector machines to predict protein structural classes
-
doi: 10.1007/s00726-007-0496-1
-
Zhang TL, Ding YS (2007) Using pseudo amino acid composition and binary-tree support vector machines to predict protein structural classes. Amino Acids. doi: 10.1007/s00726-007-0496-1
-
(2007)
Amino Acids
-
-
Zhang, T.L.1
Ding, Y.S.2
-
96
-
-
54749084166
-
An intriguing controversy over protein structural class prediction
-
Zhou GP (1998) An intriguing controversy over protein structural class prediction. J Protein Chem 17:729-738
-
(1998)
J Protein Chem
, vol.17
, pp. 729-738
-
-
Zhou, G.P.1
-
97
-
-
0037233515
-
Subcellular location prediction of apoptosis proteins
-
Zhou GP, Doctor K (2003) Subcellular location prediction of apoptosis proteins. Proteins 50:44-48
-
(2003)
Proteins
, vol.50
, pp. 44-48
-
-
Zhou, G.P.1
Doctor, K.2
-
98
-
-
34548439881
-
Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes
-
Zhou XB, Chen C, Li ZC, Zou XY (2007) Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes. J Theor Biol 248:546-551
-
(2007)
J Theor Biol
, vol.248
, pp. 546-551
-
-
Zhou, X.B.1
Chen, C.2
Li, Z.C.3
Zou, X.Y.4
|