메뉴 건너뛰기




Volumn 32, Issue 4, 2007, Pages 483-488

Using ensemble classifier to identify membrane protein types

Author keywords

Ensemble classifier; Fusion; GPI anchored; Lipid chain anchored; Multi pass transmembrane; Pseudo amino acid composition; Type I; Type II; Voting

Indexed keywords

MEMBRANE PROTEIN;

EID: 34249074523     PISSN: 09394451     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00726-006-0439-2     Document Type: Article
Times cited : (116)

References (38)
  • 2
    • 0030861438 scopus 로고    scopus 로고
    • The SWISS-PROT protein sequence data bank and its supplement TrEMBL
    • Bairoch A, Apweiler R (2000) The SWISS-PROT protein sequence data bank and its supplement TrEMBL. Nucleic Acids Res 25: 31-36
    • (2000) Nucleic Acids Res , vol.25 , pp. 31-36
    • Bairoch, A.1    Apweiler, R.2
  • 3
    • 0038636605 scopus 로고    scopus 로고
    • Support vector machines for predicting membrane protein types by using functional domain composition
    • Cai YD, Zhou GP, Chou KC (2003) Support vector machines for predicting membrane protein types by using functional domain composition. Biophys J 84: 3257-3263
    • (2003) Biophys J , vol.84 , pp. 3257-3263
    • Cai, Y.D.1    Zhou, G.P.2    Chou, K.C.3
  • 4
    • 0031588694 scopus 로고    scopus 로고
    • Relation between amino acid composition and cellular location of proteins
    • Cedano J, Aloy P, P'erez-Pons JA, Querol E (1997) Relation between amino acid composition and cellular location of proteins. J Mol Biol 266: 594-600
    • (1997) J Mol Biol , vol.266 , pp. 594-600
    • Cedano, J.1    Aloy, P.2    P'erez-Pons, J.A.3    Querol, E.4
  • 5
    • 0027324791 scopus 로고
    • A joint prediction of the folding types of 1490 human proteins from their genetic codons
    • Chou JJ, Zhang CT (1993) A joint prediction of the folding types of 1490 human proteins from their genetic codons. J Theor Biol 161: 251-262
    • (1993) J Theor Biol , vol.161 , pp. 251-262
    • Chou, J.J.1    Zhang, C.T.2
  • 6
    • 0029051959 scopus 로고
    • A novel approach to predicting protein structural classes in a (20-1)-D amino acid composition space
    • Chou KC (1995) A novel approach to predicting protein structural classes in a (20-1)-D amino acid composition space. Proteins Struct Function Genet 21: 319-344
    • (1995) Proteins Struct Function Genet , vol.21 , pp. 319-344
    • Chou, K.C.1
  • 7
    • 0035874091 scopus 로고    scopus 로고
    • Chou KC (2001) Prediction of protein cellular attributes using pseudo amino acid composition. Proteins Struct Function Genet 43: 246-255 (Erratum: ibid., 2001, 44, 60)
    • Chou KC (2001) Prediction of protein cellular attributes using pseudo amino acid composition. Proteins Struct Function Genet 43: 246-255 (Erratum: ibid., 2001, Vol. 44, 60)
  • 8
    • 26844545834 scopus 로고    scopus 로고
    • Review: Progress in protein structural class prediction and its impact to bioinformatics and proteomics
    • Chou KC (2005) Review: Progress in protein structural class prediction and its impact to bioinformatics and proteomics. Curr Protein Pept Sci 6: 423-436
    • (2005) Curr Protein Pept Sci , vol.6 , pp. 423-436
    • Chou, K.C.1
  • 9
    • 0032910566 scopus 로고    scopus 로고
    • Prediction of membrane protein types and subcellular locations
    • Chou KC, Elrod DW (1999) Prediction of membrane protein types and subcellular locations. Proteins Struct Function Genet 34: 137-153
    • (1999) Proteins Struct Function Genet , vol.34 , pp. 137-153
    • Chou, K.C.1    Elrod, D.W.2
  • 10
    • 0028121983 scopus 로고
    • Predicting protein folding types by distance functions that make allowances for amino acid interactions
    • Chou KC, Zhang CT (1994) Predicting protein folding types by distance functions that make allowances for amino acid interactions. J Biol Chem 269: 22014-22020
    • (1994) J Biol Chem , vol.269 , pp. 22014-22020
    • Chou, K.C.1    Zhang, C.T.2
  • 11
    • 0029157083 scopus 로고
    • Review: Prediction of protein structural classes
    • Chou KC, Zhang CT (1995) Review: Prediction of protein structural classes. Crit Rev Biochem Mol Biol 30: 275-349
    • (1995) Crit Rev Biochem Mol Biol , vol.30 , pp. 275-349
    • Chou, K.C.1    Zhang, C.T.2
  • 12
    • 0003128793 scopus 로고
    • Prediction of protein structural classes from amino acid composition
    • Fasman GD ed, PlenumPress, New York, pp
    • Chou PY (1989) Prediction of protein structural classes from amino acid composition. In: Fasman GD (ed) Prediction of protein structure and the principles of protein conformation. PlenumPress, New York, pp 549-586
    • (1989) Prediction of protein structure and the principles of protein conformation , pp. 549-586
    • Chou, P.Y.1
  • 13
    • 34249753618 scopus 로고
    • Support vector networks
    • Cortes C, Vapnik V (1995) Support vector networks. Mach Learn 20: 273-293
    • (1995) Mach Learn , vol.20 , pp. 273-293
    • Cortes, C.1    Vapnik, V.2
  • 14
    • 84926662675 scopus 로고
    • Nearest neighbour pattern classification
    • Cover TM, Hart PE (1967) Nearest neighbour pattern classification. IEEE Trans Inform Theory IT-13: 21-27
    • (1967) IEEE Trans Inform Theory , vol.IT-13 , pp. 21-27
    • Cover, T.M.1    Hart, P.E.2
  • 15
    • 0035053818 scopus 로고    scopus 로고
    • Prediction of the subcellular location of prokaryotic proteins based on a new representation of the amino acid composition
    • Feng ZP (2001) Prediction of the subcellular location of prokaryotic proteins based on a new representation of the amino acid composition. Biopolymers 58: 491-499
    • (2001) Biopolymers , vol.58 , pp. 491-499
    • Feng, Z.P.1
  • 16
    • 0036459850 scopus 로고    scopus 로고
    • An overview on predicting the subcellular location of a protein
    • Feng ZP (2002) An overview on predicting the subcellular location of a protein. In Silico Biol 2: 291-303
    • (2002) In Silico Biol , vol.2 , pp. 291-303
    • Feng, Z.P.1
  • 17
    • 21244494076 scopus 로고    scopus 로고
    • Using pseudo amino acid composition to predict protein subcellular location: Approached with Lyapunov index, Bessel function, and Chebyshev filter
    • Gao Y, Shao SH, Xiao X, Ding YS, Huang YS, Huang ZD, Chou KC (2005) Using pseudo amino acid composition to predict protein subcellular location: approached with Lyapunov index, Bessel function, and Chebyshev filter. Amino Acids 28: 373-376
    • (2005) Amino Acids , vol.28 , pp. 373-376
    • Gao, Y.1    Shao, S.H.2    Xiao, X.3    Ding, Y.S.4    Huang, Y.S.5    Huang, Z.D.6    Chou, K.C.7
  • 18
    • 33745102264 scopus 로고    scopus 로고
    • Classifying G protein-coupled receptors and nuclear receptors based on protein power spectrum from fast Fourier transform
    • Guo YZ, Li M, Lu M, Wen Z, Wang K, Li G, Wu J (2006) Classifying G protein-coupled receptors and nuclear receptors based on protein power spectrum from fast Fourier transform. Amino Acids 30: 397-402
    • (2006) Amino Acids , vol.30 , pp. 397-402
    • Guo, Y.Z.1    Li, M.2    Lu, M.3    Wen, Z.4    Wang, K.5    Li, G.6    Wu, J.7
  • 20
    • 0036051172 scopus 로고    scopus 로고
    • Prediction of protein strctural class by amino acid and polypeptide composition
    • Luo RY, Feng ZP, Liu JK (2002) Prediction of protein strctural class by amino acid and polypeptide composition. Eur J Biochem 269: 4219-4225
    • (2002) Eur J Biochem , vol.269 , pp. 4219-4225
    • Luo, R.Y.1    Feng, Z.P.2    Liu, J.K.3
  • 21
    • 0002975203 scopus 로고
    • On the generalized distance in statistics
    • Mahalanobis PC (1936) On the generalized distance in statistics. Proc Natl Inst Sci India 2: 49-55
    • (1936) Proc Natl Inst Sci India , vol.2 , pp. 49-55
    • Mahalanobis, P.C.1
  • 23
    • 0016772212 scopus 로고
    • Comparison of the predicted and observed secondary structure of T4 phage lysozyme
    • Matthews BW (1975) Comparison of the predicted and observed secondary structure of T4 phage lysozyme. Biochim Biophys Acta 405: 442-451
    • (1975) Biochim Biophys Acta , vol.405 , pp. 442-451
    • Matthews, B.W.1
  • 24
    • 0022631926 scopus 로고
    • The folding type of a protein is relevant to the amino acid composition
    • Nakashima H, Nishikawa K, Ooi T (1986) The folding type of a protein is relevant to the amino acid composition. J Biochem 99: 152-162
    • (1986) J Biochem , vol.99 , pp. 152-162
    • Nakashima, H.1    Nishikawa, K.2    Ooi, T.3
  • 25
    • 0042885957 scopus 로고    scopus 로고
    • Application of pseudo amino acid composition for predicting protein subcellular location: Stochastic signal processing approach
    • Pan YX, Zhang ZZ, Guo ZM, Feng GY, Huang ZD, He L (2003) Application of pseudo amino acid composition for predicting protein subcellular location: stochastic signal processing approach. J Protein Chem 22: 395-402
    • (2003) J Protein Chem , vol.22 , pp. 395-402
    • Pan, Y.X.1    Zhang, Z.Z.2    Guo, Z.M.3    Feng, G.Y.4    Huang, Z.D.5    He, L.6
  • 26
    • 34249076530 scopus 로고    scopus 로고
    • *Pillai KCS (1985) Mahalanobis D2. In: Kotz S, Johnson NL (eds) Encyclopedia of statistical sciences, 5. Wiley, New york, pp 176-181
    • *Pillai KCS (1985) Mahalanobis D2. In: Kotz S, Johnson NL (eds) Encyclopedia of statistical sciences, Vol. 5. Wiley, New york, pp 176-181
  • 28
    • 33745093400 scopus 로고    scopus 로고
    • Prediction of protein structural classes using support vector machines
    • Sun XD, Huang RB (2006) Prediction of protein structural classes using support vector machines. Amino Acids 30: 469-475
    • (2006) Amino Acids , vol.30 , pp. 469-475
    • Sun, X.D.1    Huang, R.B.2
  • 29
    • 8444248846 scopus 로고    scopus 로고
    • Weighted-support vector machines for predicting membrane protein types based on pseudo amino acid composition
    • Wang M, Yang J, Liu GP, Xu ZJ, Chou KC (2004)Weighted-support vector machines for predicting membrane protein types based on pseudo amino acid composition. Protein Eng Design Select 17: 509-516
    • (2004) Protein Eng Design Select , vol.17 , pp. 509-516
    • Wang, M.1    Yang, J.2    Liu, G.P.3    Xu, Z.J.4    Chou, K.C.5
  • 30
    • 6344231856 scopus 로고    scopus 로고
    • SLLE for predicting membrane protein types
    • Wang M, Yang J, Xu ZJ, Chou KC (2005) SLLE for predicting membrane protein types. J Theor Biol 232: 7-15
    • (2005) J Theor Biol , vol.232 , pp. 7-15
    • Wang, M.1    Yang, J.2    Xu, Z.J.3    Chou, K.C.4
  • 31
    • 20344364176 scopus 로고    scopus 로고
    • An application of gene comparative image for predicting the effect on replication ratio by HBV virus gene missense mutation
    • Xiao X, Shao S, Ding Y, Huang Z, Chen X, Chou KC (2005a) An application of gene comparative image for predicting the effect on replication ratio by HBV virus gene missense mutation. J Theor Biol 235: 555-565
    • (2005) J Theor Biol , vol.235 , pp. 555-565
    • Xiao, X.1    Shao, S.2    Ding, Y.3    Huang, Z.4    Chen, X.5    Chou, K.C.6
  • 32
    • 15244350269 scopus 로고    scopus 로고
    • Using complexity measure factor to predict protein subcellular location
    • Xiao X, Shao S, Ding Y, Huang Z, Huang Y, Chou KC (2005b) Using complexity measure factor to predict protein subcellular location. Amino Acids 28: 57-61
    • (2005) Amino Acids , vol.28 , pp. 57-61
    • Xiao, X.1    Shao, S.2    Ding, Y.3    Huang, Z.4    Huang, Y.5    Chou, K.C.6
  • 33
    • 32944461574 scopus 로고    scopus 로고
    • Using cellular automata images and pseudo amino acid composition to predict protein sub-cellular location
    • Xiao X, Shao SH, Ding YS, Huang ZD, Chou KC (2006a) Using cellular automata images and pseudo amino acid composition to predict protein sub-cellular location. Amino Acids 30: 49-54
    • (2006) Amino Acids , vol.30 , pp. 49-54
    • Xiao, X.1    Shao, S.H.2    Ding, Y.S.3    Huang, Z.D.4    Chou, K.C.5
  • 34
    • 33644889341 scopus 로고    scopus 로고
    • Using pseudo amino acid composition to predict protein structural classes: Approached with complexity measure factor
    • Xiao X, Shao SH, Huang ZD, Chou KC (2006b) Using pseudo amino acid composition to predict protein structural classes: approached with complexity measure factor. J Comput Chem 27: 478-482
    • (2006) J Comput Chem , vol.27 , pp. 478-482
    • Xiao, X.1    Shao, S.H.2    Huang, Z.D.3    Chou, K.C.4
  • 35
    • 33745076136 scopus 로고    scopus 로고
    • Prediction protein homo-oligomer types by pseudo amino acid composition: Approached with an improved feature extraction and naive Bayes feature fusion
    • Zhang SW, Pan Q, Zhang HC, Shao ZC, Shi JY (2006) Prediction protein homo-oligomer types by pseudo amino acid composition: approached with an improved feature extraction and naive Bayes feature fusion. Amino Acids 30: 461-468
    • (2006) Amino Acids , vol.30 , pp. 461-468
    • Zhang, S.W.1    Pan, Q.2    Zhang, H.C.3    Shao, Z.C.4    Shi, J.Y.5
  • 36
    • 0035400226 scopus 로고    scopus 로고
    • Some insights into protein structural class prediction
    • Zhou GP, Assa-Munt N (2001) Some insights into protein structural class prediction. Proteins Struct Function Genet 44: 57-59
    • (2001) Proteins Struct Function Genet , vol.44 , pp. 57-59
    • Zhou, G.P.1    Assa-Munt, N.2
  • 37
    • 33646065351 scopus 로고    scopus 로고
    • Predicting protease types by hybridizing gene ontology and pseudo amino acid composition
    • Zhou GP, Cai YD (2006) Predicting protease types by hybridizing gene ontology and pseudo amino acid composition. Proteins Struct Function Bioinform 63: 681-684
    • (2006) Proteins Struct Function Bioinform , vol.63 , pp. 681-684
    • Zhou, G.P.1    Cai, Y.D.2
  • 38
    • 0037233515 scopus 로고    scopus 로고
    • Subcellular location prediction of apoptosis proteins
    • Zhou GP, Doctor K (2003) Subcellular location prediction of apoptosis proteins. Proteins Struct Function Genet 50: 44-48
    • (2003) Proteins Struct Function Genet , vol.50 , pp. 44-48
    • Zhou, G.P.1    Doctor, K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.