A new type of plant chitinase containing LysM domains from a fern (Pteris ryukyuensis): Roles of LysM domains in chitin binding and antifungal activity

Glycobiology

Volumn 18, Issue 5, 2008, Pages 414-423

  Onaga, Shoko ^a   Taira, Toki ^a  

^a UNIVERSITY OF THE RYUKYUS   (Japan)

Author keywords

Antifungal activity; Chitin binding; Family 18 chitinase; LysM; Plant chitinase

Indexed keywords

CHITIN; CHITINASE; CHITINASE 3B; COMPLEMENTARY DNA; GLYCOSIDASE; NUCLEOTIDE; PROLINE; SERINE; THREONINE; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ANTIFUNGAL ACTIVITY; ARTICLE; BRAKE FERN; CARBOXY TERMINAL SEQUENCE; CATALYSIS; CELL WALL; COLUMN CHROMATOGRAPHY; CONTROLLED STUDY; DRUG PROTEIN BINDING; FUNGUS; GENE AMPLIFICATION; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN PURIFICATION; PTERIS RYUKYUENSIS; RESIDUE ANALYSIS; WILD TYPE;

AMINO ACID MOTIFS; AMINO ACID SEQUENCE; ANTIFUNGAL AGENTS; BASE SEQUENCE; BINDING SITES; CATALYTIC DOMAIN; CHITIN; CHITINASE; CLONING, MOLECULAR; DNA, COMPLEMENTARY; HYDROLYSIS; MOLECULAR SEQUENCE DATA; MUCOPROTEINS; PLANT PROTEINS; PROTEIN STRUCTURE, TERTIARY; PTERIS; RECOMBINANT PROTEINS; SEQUENCE ALIGNMENT;

FILICOPHYTA; FUNGI; PTERIS;

EID: 42449095470     PISSN: 09596658     EISSN: 14602423     Source Type: Journal    
DOI: 10.1093/glycob/cwn018     Document Type: Article

References (31)

1. Amon P, Haas E, Sumper M. 1998. The sex-inducing pheromone and wounding trigger the same set of genes in the multicellular green alga Volvox Plant Cell. 10:781-789.
2. Bateman A, Bycroft M. 2000. The structure of a LysM domain from E. coli membrane-bound Lytic Murein Transglycosylase D (MltD). J Mol Biol. 299:1113-1119.
3. Beintema JJ. 1994. Structural features of plant chitinases and chitin-binding proteins. FEBS Lett. 350:159-163.
4. Bendtsen JD, Nielsen H, von Heijne G, Brunak S. 2004. Improved prediction of signal peptides: SignalP 3.0. J Mol Biol. 340:783-795.
5. Broglie K, Chet T, Holliday M, Cressman R, Biddle P, Knowlton S, Mauvais CJ, Broglie R. 1991. Transgenic plants with enhanced resistance to the fungal pathogen Rhizoctonia solani. Science, 254:1194-1197.
6. Collinge DB, Kragh KM, Mikkelsen JD, Nielsen KK, Rasmussen U, Vad K. 1993. Plant chitinases. Plant J. 3:31-40.
7. Graham LS, Sticklen MB. 1994. Plant chitinases. Can J Bot. 72:1057-1083.
8. Harrison MJ. 1999. Molecular and cellular aspects of the arbuscular mycorrhizal symbiosis. Annu Rev Plant Physiol Plant Mol Biol. 50:361-389.
9. Henrissat B, Bairoch A. 1993. New families in the classification of glycosyl hydrolases based on amino acid sequence similarities. Biochem J. 293:781-788.
10. Imoto T, Yagishita K. 1971. A simple activity measurement of lysozyme. Agric Biol Chem. 33:1154-1156.
11. Joris B, Englebert S, Chu CP, Kariyama R, Daneo-Moore L, Shockman GD, Ghuysen JM. 1992. Modular design of the Enterococcus hirae muramidase-2 and Streptococcus faecalis autolysin. FEMS Microbiol Lett. 70:257-264.
12. Kaku H, Nishizawa Y, Ishii-Minami N, Akimoto-Tomiyama C, Dohmae N, Takio K, Minami E, Shibuya N. 2006. Plant cells recognize chitin fragments for defense signaling through a plasma membrane receptor. Proc Natl Acad Sci USA. 103:11086-11091.
13. Kasprzewska A. 2003. Plant chitinases: Regulation and function. Cell Mol Biol Lett. 8:809-824.
14. Kawase T, Yokokawa S, Saito A, Fujii T, Nikaidou N, Miyashita K, Watanabe T. 2006. Comparison of enzymatic and antifungal properties between family 18 and 19 chitinases from S. coelicolor A3(2). Biosci Biotechnol Biochem. 70:988-998.
15. Koga D, Yoshioka T, Arakane Y. 1998. HPLC analysis of anomeric formation and cleavage pattern by chitinolytic enzyme. Biosci Biotechnol Biochem. 62:1643-1646.
16. Laemmli UK. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature. 227:680-685.
17. Limpens E, Franken C, Smit P, Willemse J, Bisseling T, Geurts R. 2003. LysM domain receptor kinases regulating rhizobial Nod factor induced infection. Science. 302:630-633.
18. Magliani W, Conti S, Gerloni M, Bertolotti D, Polonelli L. 1997. Yeast killer systems. Clin Microbiol Rev. 10:369-400.
19. Marchler-Bauer A, Anderson JB, Cherukuri PF, DeWeese-Scott C, Geer LY, Gwadz M, He S, Hurwitz DI, Jackson JD, Ke Z, et al. 2005. CDD: A conserved domain database for protein classification. Nucleic Acids Res. 33:D192-D196.
20. Nierzwicki-Bauer SA, Haselkorn R. 1986. Differences in mRNA levels in Anabaena living freely or in symbiotic association with Azolla. EMBO J. 5:29-35.
21. Pryer KM, Schneider H, Smith AR, Cranfill R, Wolf PG, Hunt JS, Sipes SD. 2001. Horsetails and ferns are a monophyletic-group and the closest living, relatives to seed plants. Nature. 409:618-22.
22. Radutoiu S, Madsen LH, Madsen EB, Felle HH, Umehara Y, Grønlund M, Sato S, Nakamura Y, Tabata S, Sandal N, et al. 2003. Plant recognition of symbiotic bacteria requires two LysM receptor-like kinases. Nature. 425:585-592.
23. Salzer P, Bonanomi A, Beyer K, Vögeli-Lange R, Aeschbacher RA, Lange J, Wiemken A, Kim D, Cook DR, Boller T. 2000. Differential expression of eight chitinase genes in Medicago truncatula roots during mycorrhiza, formation, nodulation, and pathogen infection. Mol Plant Microbe Interact. 13:763-777.
24. Schlumbaum A., Mauch F, Vögeli U, Boller T. 1986. Plant chitinases are potent inhibitors of fungal growth. Nature. 324:365-367.
25. Seidl V, Huemer B, Seiboth B, Kubicek CP. 2005. A complete survey of Trichoderma chitinases reveals three distinct subgroups of family 18 chitinases. FEBS J. 272:5923-5939.
26. Smith PK, Krohn RI, Hermason GT, Mallia, AK, Gartner FH, Provenzano MD, Fujimoto EK, Goeke NM, Olson BJ, Klenk DC. 1985. Measurement of protein using bicinchoninic acid. Anal Biochem. 150:76-85.
27. Taira T, Ohnuma T, Yamagami T, Aso Y, Ishiguro M, Ishihara M. 2002. Antifungal activity of rye (Secale cereale) seed chitinases: The different binding manner of class I and class II chitinases to the fungal cell walls. Biosci Biotechnol Biochem. 66:970-977.
28. Taira T, Toma N, Ishihara M. 2005. Purification, characterization, and antifungal activity of chitinases from pineapple (Ananas comosus) leaf. Biosci Biotechnol Biochem. 69:189-196.
29. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876-4882.
30. Yamagami T, Funatsu G. 1996. Limited proteolysis and reduction-carboxymethylation of rye seed chitinase-a: Role of the chitin-binding domain in its chitinase action. Biosci Biotechnot Biochem. 60:1081-1086.
31. Yamagami T, Ishiguro M. 1998. Complete amino acid sequences of chitinase-1 and -2 from bulbs of genus Tulipa. Biosci Biotechnol Biochem. 62:1253-1257.