Interplay of master regulatory proteins and mRNA in gene expression: 3D Monte Carlo simulations

Chemical Physics Letters

Volumn 456, Issue 4-6, 2008, Pages 247-252

  Zhdanov, Vladimir P ^a,b  

^a CHALMERS UNIVERSITY OF TECHNOLOGY   (Sweden)

^b BORESKOV INSTITUTE OF CATALYSIS   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTER SIMULATION; FEEDBACK; GENE EXPRESSION; PROBABILITY DISTRIBUTIONS; RNA;

CYTOPLASM; NUCLEUS; PROTEIN PRODUCTION;

PROTEINS;

EID: 42249096939     PISSN: 00092614     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cplett.2008.03.047     Document Type: Article

References (44)

1. Alberts B., Johnson A., Lewis J., Raff M., Roberts K., and Walter P. Molecular Biology of the Cell (2002), Garland, New York
2. Golding I., and Cox E.C. Proc. Nat. Acad. Sci. USA 101 (2004) 11310
3. Yu J., Xiao J., Ren X., Lao K., and Xie X.S. Science 311 (2006) 1600
4. Cai L., Friedman N., and Xie X.S. Nature 440 (2006) 358
5. Paulsson J. Nature 427 (2004) 415
6. Mariani L., Löhning M., Radbruch A., and Höfer T. Progr. Biophys. Mol. Biol. 86 (2004) 45
7. Kaern M., Elston T.C., Blake W.J., and Collins J.J. Nature Rev. Genet. 6 (2005) 451
8. Paulsson J. Phys. Life Sci. 2 (2005) 157
9. Raser J.M., and O'Shea E.K. Science 309 (2005) 2010
10. Zhou T.S., Chen L.N., and Aihara K. Phys. Rev. Lett. 95 (2005) 178103
11. Lipshtat A., Loinger A., Balaban N.Q., and Biham O. Phys. Rev. Lett. 96 (2006) 188101
12. Lemaire V., Lee C.F., Lei J., Metivier R., and Glass L. Phys. Rev. Lett. 96 (2006) 198102
13. Friedman N., Cai L., and Xie X.S. Phys. Rev. Lett. 97 (2006) 168302
14. Zhdanov V.P. Chem. Phys. Lett. 424 (2006) 394
15. Morelli L.G., and Julicher F. Phys. Rev. Lett. 98 (2007) 228101
16. Zhdanov V.P. JETP Lett. 84 (2007) 632
17. Zhdanov V.P. JETP Lett. 86 (2007) 492
18. Pedraza J.M., and Paulsson J. Science 319 (2008) 339
19. Ellis R.J. Trends Biochem. Sci. 26 (2001) 597
20. Misteli T. Histochem. Cell Biol. 129 (2008) 5
21. Shav-Tal Y., Darzacq X., Shenoy S.M., Fusco D., Janicki S.M., Spector D.L., and Singer R.H. Science 304 (2004) 1797
22. Politz J.C.R., et al. Mol. Biol. Cell 17 (2006) 1239
23. Lemerle C., Di Ventura B., and Serrano L. FEBS Lett. 579 (2005) 1789
24. Tolle D.P., and Le Novere N. Curr. Bioinform. 1 (2006) 315
25. Castiglione F., Liso A., Bernaschi M., and Succi S. Curr. Med. Chem. 14 (2007) 625
26. Dobrzynski M., Rodriguez J.V., Kaandorp J.A., and Blom J.G. Bioinformatics 23 (2007) 1969
27. Rangamani P., and Iyengar R. J. Biosci. 32 (2007) 157
28. K. Lindenberg, G. Oshanin, M. Tachiya (Eds.), Chemical Kinetics Beyond the Textbook: Fluctuations, Many-Particle Effects and Anomalous Dynamics, J. Phys. Condens. Matter 19 (6) (2007).
29. Metzler R. Phys. Rev. Lett. 87 (2001) 068103
30. Bialek W., and Setayeshgar S. Proc. Nat. Acad. Sci. USA 102 (2005) 10040
31. Zhdanov V.P. J. Chem. Phys. 127 (2007) 035101
32. van Zon J.S., and ten Wolde P.R. Phys. Rev. Lett. 94 (2005) 128103
33. van Zon J.S., Morelli M.J., Tanase-Nicola S., and ten Wolde P.R. Biophys. J. 91 (2006) 4350
34. Isaacson S.A., and Peskin C.S. SIAM J. Sci. Comp. 28 (2006) 47
35. Zhdanov V.P. JETP Lett. 85 (2007) 302
36. Bhartiya S., Chaudhary N., Venkatesh K.V., and Doyle F.J. J. Roy. Soc. Interf. 3 (2006) 383
37. Xiong W., and Ferrell J.E. Nature 426 (2003) 460
38. Zhdanov V.P. J. Exp. Theor. Phys. 104 (2007) 162
39. Chickarmane V., Troein C., Nuber U.A., Sauro H.M., and Peterson C. PLOS Comp. Biol. 2 (2006) 1080
40. Bhalla U.S. Biophys. J. 87 (2004) 745
41. Gillespie D.T. J. Phys. Chem. 81 (1977) 2340
42. Binder K. In: Binder K. (Ed). Monte Carlo Methods in Statistical Physics (1979), Springer, Berlin 1
43. Rateitschak K., and Wolkenhauer O. Math. Biosci. 205 (2007) 163
44. Landau L.D., and Lifshitz E.M. Statistical Physics (1980), Pergamon, Oxford