-
1
-
-
2342419732
-
DNA replication fidelity
-
Kunkel, T. A. (2004) DNA replication fidelity. J. Biol. Chem. 279, 16895-16898.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 16895-16898
-
-
Kunkel, T.A.1
-
2
-
-
2542440567
-
Error-prone replication for better or worse
-
Tippin, B., Pham, P., and Goodman, M. F. (2004) Error-prone replication for better or worse. Trends Microbiol. 12, 288-295.
-
(2004)
Trends Microbiol
, vol.12
, pp. 288-295
-
-
Tippin, B.1
Pham, P.2
Goodman, M.F.3
-
3
-
-
0035997344
-
Error-prone repair DNA polymerases in prokaryotes and eukaryotes
-
Goodman, M. F. (2002) Error-prone repair DNA polymerases in prokaryotes and eukaryotes. Annu. Rev. Biochem. 71, 17-50.
-
(2002)
Annu. Rev. Biochem
, vol.71
, pp. 17-50
-
-
Goodman, M.F.1
-
4
-
-
0034677948
-
Fidelity of human DNA polymerase η
-
Johnson, R. E., Washington, M. T., Prakash, S., and Prakash, L. (2000) Fidelity of human DNA polymerase η. J. Biol. Chem. 275, 7447-7450.
-
(2000)
J. Biol. Chem
, vol.275
, pp. 7447-7450
-
-
Johnson, R.E.1
Washington, M.T.2
Prakash, S.3
Prakash, L.4
-
5
-
-
0034635953
-
The human DINB1 gene encodes the DNA polymerase Polθ
-
Johnson, R. E., Prakash, S., and Prakash, L. (2000) The human DINB1 gene encodes the DNA polymerase Polθ. Proc. Natl. Acad. Sci. U.S.A. 97, 3838-3843.
-
(2000)
Proc. Natl. Acad. Sci. U.S.A
, vol.97
, pp. 3838-3843
-
-
Johnson, R.E.1
Prakash, S.2
Prakash, L.3
-
6
-
-
0034671730
-
Fidelity and processivity of DNA synthesis by DNA polymerase κ, the product of the human DINB1 gene
-
Ohashi, E., Bebenek, K., Matsuda, T., Feaver, W. J., Gerlach, V. L., Friedberg, E. C., Ohmori, H., and Kunkel, T. A. (2000) Fidelity and processivity of DNA synthesis by DNA polymerase κ, the product of the human DINB1 gene. J. Biol. Chem. 275, 39678-39684.
-
(2000)
J. Biol. Chem
, vol.275
, pp. 39678-39684
-
-
Ohashi, E.1
Bebenek, K.2
Matsuda, T.3
Feaver, W.J.4
Gerlach, V.L.5
Friedberg, E.C.6
Ohmori, H.7
Kunkel, T.A.8
-
7
-
-
0034720286
-
Roles of E. coli DNA polymerases IV and V in lesion-targeted and untargeted SOS mutagenesis
-
Tang, M., Pham, P., Shen, X., Taylor, J. S., O'Donnell, M., Woodgate, R., and Goodman, M. F. (2000) Roles of E. coli DNA polymerases IV and V in lesion-targeted and untargeted SOS mutagenesis. Nature 404, 1014-1018.
-
(2000)
Nature
, vol.404
, pp. 1014-1018
-
-
Tang, M.1
Pham, P.2
Shen, X.3
Taylor, J.S.4
O'Donnell, M.5
Woodgate, R.6
Goodman, M.F.7
-
9
-
-
0028206048
-
Function and structure relationships in DNA polymerases
-
Joyce, C. M., and Steitz, T. A. (1994) Function and structure relationships in DNA polymerases. Annu. Rev. Biochem. 63, 777-822.
-
(1994)
Annu. Rev. Biochem
, vol.63
, pp. 777-822
-
-
Joyce, C.M.1
Steitz, T.A.2
-
10
-
-
0034881129
-
Getting a grip on how DNA polymerases function
-
Patel, P. H., and Loeb, L. A. (2001) Getting a grip on how DNA polymerases function. Nat. Struct. Biol. 8, 656-659.
-
(2001)
Nat. Struct. Biol
, vol.8
, pp. 656-659
-
-
Patel, P.H.1
Loeb, L.A.2
-
11
-
-
1642382214
-
Snapshots of replication through an abasic lesion: Structural basis for base substitutions and frameshifts
-
Ling, H., Boudsocq, F., Woodgate, R., and Yang, W. (2004) Snapshots of replication through an abasic lesion: Structural basis for base substitutions and frameshifts. Mol. Cell 13, 751-762.
-
(2004)
Mol. Cell
, vol.13
, pp. 751-762
-
-
Ling, H.1
Boudsocq, F.2
Woodgate, R.3
Yang, W.4
-
12
-
-
0035812849
-
Crystal structure of a Y-family DNA polymerase in action: A mechanism for error-prone and lesion-bypass replication
-
Ling, H., Boudsocq, F., Woodgate, R., and Yang, W. (2001) Crystal structure of a Y-family DNA polymerase in action: A mechanism for error-prone and lesion-bypass replication. Cell 107, 91-102.
-
(2001)
Cell
, vol.107
, pp. 91-102
-
-
Ling, H.1
Boudsocq, F.2
Woodgate, R.3
Yang, W.4
-
14
-
-
34249690087
-
Ability of Polymerase η and T7 DNA Polymerase to Bypass Bulge Structures
-
Cannistraro, V. J., and Taylor, J. S. (2007) Ability of Polymerase η and T7 DNA Polymerase to Bypass Bulge Structures. J. Biol. Chem. 282, 11188-11196.
-
(2007)
J. Biol. Chem
, vol.282
, pp. 11188-11196
-
-
Cannistraro, V.J.1
Taylor, J.S.2
-
15
-
-
31044450194
-
Structural analysis of strand misalignment during DNA synthesis by a human DNA polymerase
-
Garcia-Diaz, M., Bebenek, K., Krahn, J. M., Pedersen, L. C., and Kunkel, T. A. (2006) Structural analysis of strand misalignment during DNA synthesis by a human DNA polymerase. Cell 124, 331-342.
-
(2006)
Cell
, vol.124
, pp. 331-342
-
-
Garcia-Diaz, M.1
Bebenek, K.2
Krahn, J.M.3
Pedersen, L.C.4
Kunkel, T.A.5
-
16
-
-
0022577219
-
The base substitution fidelity of eucaryotic DNA polymerases. Mispairing frequencies, site preferences, insertion preferences, and base substitution by dislocation
-
Kunkel, T. A., and Alexander, P. S. (1986) The base substitution fidelity of eucaryotic DNA polymerases. Mispairing frequencies, site preferences, insertion preferences, and base substitution by dislocation. J. Biol. Chem. 261, 160-166.
-
(1986)
J. Biol. Chem
, vol.261
, pp. 160-166
-
-
Kunkel, T.A.1
Alexander, P.S.2
-
17
-
-
0025109103
-
Misalignment-mediated DNA synthesis errors
-
Kunkel, T. A. (1990) Misalignment-mediated DNA synthesis errors. Biochemistry 29, 8003-8011.
-
(1990)
Biochemistry
, vol.29
, pp. 8003-8011
-
-
Kunkel, T.A.1
-
18
-
-
0023790391
-
Mutagenesis by transient misalignment
-
Kunkel, T. A., and Soni, A. (1988) Mutagenesis by transient misalignment. J. Biol. Chem. 263, 14784-14789.
-
(1988)
J. Biol. Chem
, vol.263
, pp. 14784-14789
-
-
Kunkel, T.A.1
Soni, A.2
-
19
-
-
0016292997
-
Mutational specificity of a conditional Escherichia coli mutator, mutD5
-
Fowler, R. G., Degnen, G. E., and Cox, E. C. (1974) Mutational specificity of a conditional Escherichia coli mutator, mutD5. Mol. Gen. Genet. 133, 179-191.
-
(1974)
Mol. Gen. Genet
, vol.133
, pp. 179-191
-
-
Fowler, R.G.1
Degnen, G.E.2
Cox, E.C.3
-
20
-
-
0027518205
-
Kinetics of deoxyribonucleotide insertion and extension at abasic template lesions in different sequence contexts using HIV-1 reverse transcriptase
-
Cai, H., Bloom, L. B., Eritja, R., and Goodman, M. F. (1993) Kinetics of deoxyribonucleotide insertion and extension at abasic template lesions in different sequence contexts using HIV-1 reverse transcriptase. J. Biol. Chem. 268, 23567-23572.
-
(1993)
J. Biol. Chem
, vol.268
, pp. 23567-23572
-
-
Cai, H.1
Bloom, L.B.2
Eritja, R.3
Goodman, M.F.4
-
21
-
-
0031038053
-
Abasic translesion synthesis by DNA polymerase β violates the "A-rule". Novel types of nucleotide incorporation by human DNA polymerase β at an abasic lesion in different sequence contexts
-
Efrati, E., Tocco, G., Eritja, R., Wilson, S. H., and Goodman, M. F. (1997) Abasic translesion synthesis by DNA polymerase β violates the "A-rule". Novel types of nucleotide incorporation by human DNA polymerase β at an abasic lesion in different sequence contexts. J. Biol. Chem. 272, 2559-2569.
-
(1997)
J. Biol. Chem
, vol.272
, pp. 2559-2569
-
-
Efrati, E.1
Tocco, G.2
Eritja, R.3
Wilson, S.H.4
Goodman, M.F.5
-
22
-
-
0032821162
-
Distinct roles for Rev1p and Rev7p during translesion synthesis in Saccharomyces cerevisiae
-
Baynton, K., Bresson-Roy, A., and Fuchs, R. P. (1999) Distinct roles for Rev1p and Rev7p during translesion synthesis in Saccharomyces cerevisiae. Mol. Microbiol. 34, 124-133.
-
(1999)
Mol. Microbiol
, vol.34
, pp. 124-133
-
-
Baynton, K.1
Bresson-Roy, A.2
Fuchs, R.P.3
-
23
-
-
0033020150
-
Impaired translesion synthesis in xeroderma pigmentosum variant extracts
-
Cordonnier, A. M., Lehmann, A. R., and Fuchs, R. P. (1999) Impaired translesion synthesis in xeroderma pigmentosum variant extracts. Mol. Cell. Biol. 19, 2206-2211.
-
(1999)
Mol. Cell. Biol
, vol.19
, pp. 2206-2211
-
-
Cordonnier, A.M.1
Lehmann, A.R.2
Fuchs, R.P.3
-
24
-
-
4444337946
-
Human DNA polymerases λ and β show different efficiencies of translesion DNA synthesis past abasic sites and alternative mechanisms for frameshift generation
-
Blanca, G., Villani, G., Shevelev, I., Ramadan, K., Spadari, S., Hubscher, U., and Maga, G. (2004) Human DNA polymerases λ and β show different efficiencies of translesion DNA synthesis past abasic sites and alternative mechanisms for frameshift generation. Biochemistry 43, 11605-11615.
-
(2004)
Biochemistry
, vol.43
, pp. 11605-11615
-
-
Blanca, G.1
Villani, G.2
Shevelev, I.3
Ramadan, K.4
Spadari, S.5
Hubscher, U.6
Maga, G.7
-
25
-
-
33646379868
-
Structural determinants of slippage-mediated mutations by human immunodeficiency virus type 1 reverse transcriptase
-
Hamburgh, M. E., Curr, K. A., Monaghan, M., Rao, V. R., Tripathi, S., Preston, B. D., Sarafianos, S., Arnold, E., Darden, T., and Prasad, V. R. (2006) Structural determinants of slippage-mediated mutations by human immunodeficiency virus type 1 reverse transcriptase. J. Biol. Chem. 281, 7421-7428.
-
(2006)
J. Biol. Chem
, vol.281
, pp. 7421-7428
-
-
Hamburgh, M.E.1
Curr, K.A.2
Monaghan, M.3
Rao, V.R.4
Tripathi, S.5
Preston, B.D.6
Sarafianos, S.7
Arnold, E.8
Darden, T.9
Prasad, V.R.10
-
26
-
-
0029960774
-
Binding and incision activities of UvrABC excinuclease on slipped DNA intermediates that generate frameshift mutations
-
Delagoutte, E., Bertrand-Burggraf, E., Lambert, I. B., and Fuchs, R. P. (1996) Binding and incision activities of UvrABC excinuclease on slipped DNA intermediates that generate frameshift mutations. J. Mol. Biol. 257, 970-976.
-
(1996)
J. Mol. Biol
, vol.257
, pp. 970-976
-
-
Delagoutte, E.1
Bertrand-Burggraf, E.2
Lambert, I.B.3
Fuchs, R.P.4
-
27
-
-
33750993059
-
NMR investigation of DNA primer-template models: Structural insights into dislocation mutagenesis in DNA replication
-
Chi, L. M., and Lam, S. L. (2006) NMR investigation of DNA primer-template models: Structural insights into dislocation mutagenesis in DNA replication. FEBS Lett. 580, 6496-6500.
-
(2006)
FEBS Lett
, vol.580
, pp. 6496-6500
-
-
Chi, L.M.1
Lam, S.L.2
-
28
-
-
34547899204
-
NMR investigation of primer-template models: Structural effect of sequence downstream of a thymine template on mutagenesis in DNA replication
-
Chi, L. M., and Lam, S. L. (2007) NMR investigation of primer-template models: Structural effect of sequence downstream of a thymine template on mutagenesis in DNA replication. Biochemistry 46, 9292-9300.
-
(2007)
Biochemistry
, vol.46
, pp. 9292-9300
-
-
Chi, L.M.1
Lam, S.L.2
-
29
-
-
0034214838
-
polι, a remarkably error-prone human DNA polymerase
-
Tissier, A., McDonald, J. P., Frank, E. G., and Woodgate, R. (2000) polι, a remarkably error-prone human DNA polymerase. Genes Dev. 14, 1642-1650.
-
(2000)
Genes Dev
, vol.14
, pp. 1642-1650
-
-
Tissier, A.1
McDonald, J.P.2
Frank, E.G.3
Woodgate, R.4
-
30
-
-
0033830464
-
Preferential incorporation of G opposite template T by the low-fidelity human DNA polymerase ι
-
Zhang, Y., Yuan, F., Wu, X., and Wang, Z. (2000) Preferential incorporation of G opposite template T by the low-fidelity human DNA polymerase ι. Mol. Cell. Biol. 20, 7099-7108.
-
(2000)
Mol. Cell. Biol
, vol.20
, pp. 7099-7108
-
-
Zhang, Y.1
Yuan, F.2
Wu, X.3
Wang, Z.4
-
31
-
-
0034738983
-
Eukaryotic polymerases ι and ζ act sequentially to bypass DNA lesions
-
Johnson, R. E., Washington, M. T., Haracska, L., Prakash, S., and Prakash, L. (2000) Eukaryotic polymerases ι and ζ act sequentially to bypass DNA lesions. Nature 406, 1015-1019.
-
(2000)
Nature
, vol.406
, pp. 1015-1019
-
-
Johnson, R.E.1
Washington, M.T.2
Haracska, L.3
Prakash, S.4
Prakash, L.5
-
32
-
-
0028247062
-
Most compact hairpin-turn structure exerted by a short DNA fragment, d(GCGAAGC) in solution: An extraordinarily stable structure resistant to nucleases and heat
-
Hirao, I., Kawai, G., Yoshizawa, S., Nishimura, Y., Ishido, Y., Watanabe, K., and Miura, K. (1994) Most compact hairpin-turn structure exerted by a short DNA fragment, d(GCGAAGC) in solution: An extraordinarily stable structure resistant to nucleases and heat. Nucleic Acids Res. 22, 576-582.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 576-582
-
-
Hirao, I.1
Kawai, G.2
Yoshizawa, S.3
Nishimura, Y.4
Ishido, Y.5
Watanabe, K.6
Miura, K.7
-
33
-
-
0026951903
-
Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions
-
Piotto, M., Saudek, V., and Sklenar, V. (1992) Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions. J. Biomol. NMR 2, 661-665.
-
(1992)
J. Biomol. NMR
, vol.2
, pp. 661-665
-
-
Piotto, M.1
Saudek, V.2
Sklenar, V.3
-
36
-
-
0000965687
-
Structure, energetics, and dynamics of the nucleic acid base pairs: Nonempirical ab initio calculations
-
Hobza, P., and Sponer, J. (1999) Structure, energetics, and dynamics of the nucleic acid base pairs: Nonempirical ab initio calculations. Chem. Rev. 99, 3247-3276.
-
(1999)
Chem. Rev
, vol.99
, pp. 3247-3276
-
-
Hobza, P.1
Sponer, J.2
-
37
-
-
84962376447
-
Hydration and stability of nucleic acid bases and base pairs
-
Kabelac, M., and Hobza, P. (2007) Hydration and stability of nucleic acid bases and base pairs. Phys. Chem. Chem. Phys. 9, 903-917.
-
(2007)
Phys. Chem. Chem. Phys
, vol.9
, pp. 903-917
-
-
Kabelac, M.1
Hobza, P.2
|