Understanding protein lids: Kinetic analysis of active hinge mutants in triosephosphate isomerase

Biochemistry

Volumn 38, Issue 35, 1999, Pages 11474-11481

  Sun, Jeonghoon ^a   Sampson, Nicole S ^a  

^a STONY BROOK UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

TRIOSEPHOSPHATE ISOMERASE;

AMINO ACID SEQUENCE; ARTICLE; CONFORMATIONAL TRANSITION; ENZYME CONFORMATION; ENZYME STABILITY; MICHAELIS CONSTANT; PHYLOGENY; PRIORITY JOURNAL; PROTEIN FAMILY; PROTON TRANSPORT; THERMOSTABILITY;

ANIMALS; BINDING SITES; CHICKENS; DEUTERIUM; DIHYDROXYACETONE PHOSPHATE; HEAT; KINETICS; MODELS, MOLECULAR; MULTIGENE FAMILY; MUTAGENESIS, INSERTIONAL; PEPTIDE FRAGMENTS; PROTEIN CONFORMATION; PROTEIN DENATURATION; STRUCTURE-ACTIVITY RELATIONSHIP; TRIOSE-PHOSPHATE ISOMERASE;

FELIS CATUS;

EID: 0033621030     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi990862g     Document Type: Article

References (50)

1. Gerstein, M., Lesk, A. M., and Chothia, C. (1994) Biochemistry 33, 6739-6749.
2. Gerstein, M., and Krebs, W. (1998) Nucleic Acids Res. 26, 4280-4290.
3. Rhee, S., Parris, K. D., Hyde, C. C., Ahmed, S. A., Miles, E. W., and Davies, D. R. (1997) Biochemistry 36, 7664-7680.
4. Reed, G. H., Poyner, R. R., Larsen, T. M., Wedekind, J. E., and Rayment, I. (1996) Curr. Opin. Struct. Biol. 6, 736-743.
5. Larson, E. M., Larimer, F. W., and Hartman, F. C. (1995) Biochemistry 34, 4531-4537.
6. Jia, Z., Barford, D., Flint, A. J., and Tonks, N. K. (1995) Science (Washington, D.C.) 268, 1754-1758.
7. Keng, Y. F., Wu, L., and Zhang, Z. Y. (1999) Eur. J. Biochem. 259, 809-814.
8. Wang, F., Li, W. Q., Emmett, M. R., Hendrickson, C. L., Marshall, A. G., Zhang, Y. L., Wu, L., and Zhang, Z. Y. (1998) Biochemistry 37, 15289-15299.
9. Joseph, D., Petsko, G. A., and Karplus, M. (1990) Science (Washington, D.C.) 249, 1425-1428.
10. Derreumaux, P., and Schlick, T. (1998) Biophys. J. 74, 72.
11. Delboni, L. F., Mande, S. C., Rentier-Delrue, F., Mainfroid, V., Turley, S., Vellieux, F. M., Martial, J. A., and Hol, W. G. J. (1995) Protein Sci. 4, 2594-2604.
12. Mande, S. C., Mainfroid, V., Kalk, K. H., Goraj, K., Martial, J. A., and Hol, W. G. (1994) Protein Sci. 3, 810-821.
13. Noble, M. E. M., Wierenga, R. K., Lambeir, A.-M., Opperdoes, R. R., Thunnissen, A.-M. W. H., Kalk, K. H., Groendijk, H., and Hol, W. G. J. (1991) Proteins: Struct., Funct., Genet. 10, 50-69.
14. Noble, M. E. M., Zeelen, J. P., and Wierenga, R. K. (1993) Proteins: Struct., Funct., Genet. 16, 311-326.
15. Wierenga, R. K., Noble, M. E. M., Vriend, G., Nauche, S., and Hol, W. G. J. (1991) J. Mol. Biol. 220, 995-1015.
16. Lolis, E., and Petsko, G. A. (1990) Biochemistry 29, 6619-6625.
17. Lolis, E., Alber, T., Davenport, R. C., Rose, D., Hartman, F. C., and Petsko, G. A. (1990) Biochemistry 29, 6609-6618.
18. Velanker, S. S., Ray, S. S., Gokhale, R. S., Suma, S., Balaram, H., Balaram, P., and Murthy, M. R. (1997) Structure 5, 751-761.
19. Zhang, Z., Sugio, S., Komives, E. A., Liu, K. D., Knowles, J. R., Petsko, G. A., and Ringe, D. (1994) Biochemistry 33, 2830-2837.
20. Pompliano, D. L., Peyman, A., and Knowles, J. R. (1990) Biochemistry 29, 3186-3194.
21. Sampson, N. S., and Knowles, J. R. (1992) Biochemistry 31, 8482-8487.
22. Sampson, N. S., and Knowles, J. R. (1992) Biochemistry 31, 8488-8494.
23. Williams, J. C., and McDermott, A. E. (1995) Biochemistry 34, 8309-8319.
24. Sun, J., and Sampson, N. S. (1998) Protein Sci. 7, 1495-1505.
25. de la Mare, C., Coulson, A. F. W., Knowles, J. R., Priddle, J. D., and Offord, R. E. (1972) Biochem. J. 129, 321-331.
26. Straus, D., and Gilbert, W. (1985) Proc. Natl. Acad. Sci. U.S.A. 82, 2014.
27. Hermes, J. D., Parekh, S. M., Blacklow, S. C., Köster, H., and Knowles, J. R. (1989) Gene 84, 143.
28. Bradford, M. M. (1976) Anal. Biochem. 72, 248-254.
29. Plaut, B., and Knowles, J. R. (1972) Biochem. J. 129, 311-320.
30. Ames, B. N. (1966) Methods Enzymol. 8, 115-118.
31. Leadlay, P. F., Albery, W. J., and Knowles, J. R. (1976) Biochemistry 15, 5617-5620.
32. Richard, J. P. (1991) Biochemistry 30, 4581-4585.
33. Borchert, T. V., Abagyan, R., Jaenicke, R., and Wierenga, R. K. (1994) Proc. Natl. Acad. Sci. U.S.A. 91, 1515-1518.
34. Rose, I. A. (1962) Brookhaven Symp. Biol. 15, 293-209.
35. Rieder, S. V., and Rose, I. A. (1959) J. Biol. Chem. 234, 1007-1010.
36. Albery, W. J., and Knowles, J. R. (1976) Biochemistry 75, 5627-5631.
37. Albery, W. J., and Knowles, J. R. (1976) Biochemistry 15, 5631-5640.
38. Knowles, J. R., and Albery, W. J. (1977) Acc. Chem. Res. 10, 105-111.
39. Janecek, S., and Bateman, A. (1996) Biologia 51, 613-628.
40. Farber, G. K., and Petsko, G. A. (1990) Trends Biochem. Sci. 15, 228-234.
41. Waley, S. G., Mill, J. C., Rose, I. A., and O'Connell, E. L. (1970) Nature (London) 227, 181.
42. Raines, R. T., Sutton, E. L., Straus, D. R., Gilbert, W., and Knowles, J. R. (1986) Biochemistry 25, 7142-7154.
43. Belasco, J. G., and Knowles, J. R. (1980) Biochemistry 19, 472-477.
44. Nickbarg, E. B., and Knowles, J. R. (1988) Biochemistry 27, 5939-5947.
45. Komives, E. A., Chang, L. C., Lolis, E., Tilton, R. F., Petsko, G. A., and Knowles, J. R. (1991) Biochemistry 30, 3011-3019.
46. Lodi, P. J., and Knowles, J. R. (1991) Biochemistry 30, 6948-6956.
47. Wolfenden, R. (1969) Nature 223, 704-705.
48. Collins, K. D. (1974) J. Biol. Chem. 249, 136-142.
49. Kraulis, P. J. (1991) J. Appl. Crystallogr. 24, 946-950.
50. Williamson, J. R. (1965) J. Biol. Chem. 240, 2308-2321.