Active site loop motion in triosephosphate isomerase: T-jump relaxation spectroscopy of thermal activation

Biochemistry

Volumn 42, Issue 10, 2003, Pages 2941-2951

  Desamero, Ruel ^a   Rozovsky, Sharon ^b   Zhadin, Nick ^a   McDermott, Ann ^b   Callender, Robert ^a  

^a ALBERT EINSTEIN COLLEGE OF MEDICINE   (United States)

^b Columbia University ^*  (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DISSOCIATION; ENTHALPY; FLUORESCENCE; LASER APPLICATIONS; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; REACTION KINETICS;

THERMAL ACTIVATION;

ENZYMES;

2 PHOSPHOGLYCOLATE; GLYCEROPHOSPHATE; GLYCOLIC ACID; PHOSPHATE; TRIOSEPHOSPHATE ISOMERASE; TRYPTOPHAN; UNCLASSIFIED DRUG;

ARTICLE; CONFORMATIONAL TRANSITION; DISSOCIATION; ENTHALPY; ENZYME ACTIVATION; ENZYME ACTIVE SITE; ENZYME CONFORMATION; ENZYME KINETICS; FLUORESCENCE; LASER; NONHUMAN; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PRIORITY JOURNAL; SOLID STATE; STEADY STATE; TEMPERATURE DEPENDENCE;

BINDING SITES; ENZYME ACTIVATION; ENZYME INHIBITORS; GLYCEROPHOSPHATES; HEAT; KINETICS; LIGANDS; MODELS, CHEMICAL; MOTION; MUTATION; PROTEIN CONFORMATION; SACCHAROMYCES CEREVISIAE PROTEINS; SPECTROMETRY, FLUORESCENCE; SPECTRUM ANALYSIS; SUBSTRATE SPECIFICITY; THERMODYNAMICS; TRIOSE-PHOSPHATE ISOMERASE;

EID: 0345894320     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi026994i     Document Type: Article

References (47)

1. Falzone, C. J., Wright, P. E., and Benkovic, S. J. (1994) Biochemistry 33, 439-442.
2. Wang, G. P., Cahill, S. M., Liu, X. H., Girvin, M. E., and Grubmeyer, C. (1999) Biochemistry 38, 284-295.
3. Waldman, A. D., Clarke, A. R., Wigley, D. B., Hart, K. W., Chia, W. N., Barstow, D., Atkinson, T., Munro, I., and Holbrook, J. J. (1987) Biochim. Biophys. Acta 913, 66-71.
4. Ito, Y., Yamasaki, K., Iwahara, J., Terada, T., Kamiya, A., Shirouzu, M., Muto, Y., Kawai, G., Yokoyama, S., Lane, E. D., Walchli, M., Shibata, T., Nishimura, S., and Miyazawa, T. (1997) Biochemistry 36, 9109-9119.
5. Johnson, L. N., and Wolfenden, R. (1970) J. Mol. Biol. 47, 93-100.
6. Albery, W. J., and Knowles, J. R. (1976) Biochemistry 15, 5627-5631.
7. Banner, D. W., Bloomer, A. C., Petsko, G. A., Phillips, D. C., Pogson, C. I., and Wilson, I. A. (1975) Nature 255, 609-614.
8. Alber, T., Banner, D. W., Bloomer, A. C., Petsko, G. A., Phillips, D., Rivers, P. S., and Wilson, I. A. (1981) Philos. Trans. R. Soc. London, Ser. B 293, 159-171.
9. Lolis, E., and Petsko, G. A. (1990) Biochemistry 29, 6619-6625.
10. Jogl, G., Rozovsky, S., McDermott, E. A., and Tong, L. (2003) Proc. Natl. Acad. Sci. U.S.A. 100, 50-55.
11. Pompliano, D. L., Peyman, A., and Knowles, J. R. (1990) Biochemistry 29, 3186-3194.
12. Sampson, N. S., and Knowles, J. R. (1992) Biochemistry 31, 8488-8494.
13. Sampson, N. S., and Knowles, J. R. (1992) Biochemistry 31, 8482-8487.
14. Rozovsky, S., and McDermott, A. E. (2001) J. Mol. Biol. 310, 259-270.
15. Rozovsky, S., Jogl, G., Tong, L., and McDermott, A. E. (2001) J. Mol. Biol. 310, 271-280.
16. Palmer, A. G. (2001) Annu. Rev. Biophys. Biomol. Struct. 30, 129-155.
17. Palmer, A. G., Williams, J., and McDermott, A. (1996) J. Phys. Chem. 100, 13293-13310.
18. Eftink, M. R. (1994) Biophys. J. 66, 482-501.
19. Bernasconi, C, F. (1976) Relaxation Kinetics, Academic Press, New York.
20. Putman, S. J., Coulson, A. F., Farley, I. R., Riddleston, B., and Knowles, J. R. (1972) Biochem. J. 129, 301-310.
21. Fersht, A. (1999) Structure and Mechanism in Protein Science: A Guide to Enzyme Catalysis and Protein Folding, Vol. 3, W. H. Freeman and Company, New York.
22. Williams, S., Causgrove, T. P., Gilmanshin, R., Fang, K. S., Callender, R. H., Woodruff, W. H., and Dyer, R. B. (1996) Biochemistry 35, 691-697.
23. Gulotta, M., Gilmanshin, R., Buscher, T. C., Callender, R. H., and Dryer, R. B. (2001) Biochemistry 40, 5137-5143.
24. Deng, H., Zhadin, N., and Callender, R. (2001) Biochemistry 40, 3767-3773.
25. Klein, R., Tatischeff, I., Bazin, M., Santus, R. (1981) J. Phys. Chem. 85, 670-677.
26. Harris, L. H., and Hudson, B. S. (1990) Biochemistry 29, 5276-5285.
27. Chen, Y., and Barkley, M. D. (1998) Biochemistry 37, 9976-9982.
28. Lambeir, A. M., Opperdoes, F. R., and Wierenga, R. K. (1987) Eur. J. Biochem, 168, 69-74.
29. Plaut, B., and Knowles, J. R. (1972) Biochem. J. 129, 311-320.
30. Campbell, I. D., Jones, R. B., Kiener, P. A., and Waley, S. G. (1979) Biochem. J. 179, 607-621.
31. Nickbarg, E. B., and Knowles, J. R. (1988) Biochemistry 27, 5939-5947.
32. Collins, K. D. (1974) J. Biol. Chem. 249, 136-142.
33. Amyes, T. L., O'Donoghue, A. C., and Richard, J. P. (2001) J. Am. Chem. Soc. 2001, 11325-11326.
34. Verlinde, C. L., Noble, M. E., Kalk, K. H., Groendijk, H., Wierenga, R. K., and Hol, W. G. (1991) Eur. J. Biochem. 198, 53-57.
35. Anfinrud, P. A., Han, C., and Hochstraser, R. M. (1989) Proc. Natl. Acad. Sci. U.S.A. 86, 8387-8391.
36. Richard, L., Genberg, L., Deak, J., Chiu, H.-L., and Miller, R. J. D. (1992) Biochemistry 31, 10703-10715.
37. Gulotta, M., Deng, H., Deng, H., Dyer, R. B., and Callender, R. H. (2002) Biochemistry 41, 3353-3363.
38. Williams, J. C., and McDermott, A. E. (1995) Biochemistry 34, 8309-8319.
39. Wierenga, R. K., Noble, M. E., Vriend, G., Nauche, S., and Hol, W. G. (1991) J. Mol. Biol. 220, 995-1015.
40. Cantor, C. R., and Schimmel, P. R. (1980) Biophysical Chemistry, Vol. 3, W. H. Freeman and Company, San Francisco.
41. Rigler, R., and Ehrenberg, M. (1973) Quarterly Rev. Biophys. 6, 139-199.
42. Maister, S. G., Pett, C. P., Albery, W. J., and Knowles, J. R. (1976) Biochemistry 15, 5607-5612.
43. James, D. R., and Ware, W. R. (1985) Chem. Phys. Lett. 120, 455-459.
44. Vix, A., and Lami, H. (1995) Biophys. J. 68, 1145-1151.
45. Kaplan, J. I., and Garroway, A. N. (1982) J. Magn. Reson. 49, 464-475.
46. Schaefer, D., and Spiess, H. W. (1992) J. Chem. Phys. 97, 7944-7954.
47. Basirov, A. B., Usmanov, S. M., and Zelenev, J. V. (1984) Acta Polymerica 35, 334-335.