-
1
-
-
0031815749
-
How do small single-domain proteins fold?
-
S.E. Jackson How do small single-domain proteins fold? Fold. Des. 3 1998 R81 R91
-
(1998)
Fold. Des.
, vol.3
-
-
Jackson, S.E.1
-
2
-
-
0028856785
-
Optimization of rates of protein folding: The nucleation-condensation mechanism and its implications
-
A.R. Fersht Optimization of rates of protein folding: the nucleation-condensation mechanism and its implications Proc. Natl Acad. Sci. USA 92 1995 10869 10873
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 10869-10873
-
-
Fersht, A.R.1
-
3
-
-
0032867418
-
Folding dynamics of the B1 domain of protein G explored by ultrarapid mixing
-
S.H. Park, M.C. Shastry, and H. Roder Folding dynamics of the B1 domain of protein G explored by ultrarapid mixing Nature Struct. Biol. 6 1999 943 947
-
(1999)
Nature Struct. Biol.
, vol.6
, pp. 943-947
-
-
Park, S.H.1
Shastry2
Roder, H.M.C.3
-
4
-
-
0034649355
-
Folding kinetics of Phage 434 Cro proteins
-
D.V. Laurents, S. Corrales, M. Elias-Arnanz, P. Sevilla, M. Rico, and S. Padmanabhan Folding kinetics of Phage 434 Cro proteins Biochemistry 39 2000 13963 13973
-
(2000)
Biochemistry
, vol.39
, pp. 13963-13973
-
-
Laurents, D.V.1
Corrales, S.2
Elias-Arnanz, M.3
Sevilla, P.4
Rico5
Padmanabhan, S.M.6
-
5
-
-
0033548553
-
Rapid folding with and without populated intermediates in the homologous four-helix proteins Im7 and Im9
-
N. Ferguson, A.P. Capaldi, R. James, C. Kleanthous, and S.E. Radford Rapid folding with and without populated intermediates in the homologous four-helix proteins Im7 and Im9 J. Mol. Biol. 286 1999 1597 1608
-
(1999)
J. Mol. Biol.
, vol.286
, pp. 1597-1608
-
-
Ferguson, N.1
Capaldi, A.P.2
James, R.3
Kleanthous4
Radford, S.E.C.5
-
6
-
-
0035965128
-
Acidic conditions stabilise intermediates populated during the folding of Im7 and Im9
-
S.A. Gorski, A.P. Capaldi, C. Kleanthous, and S.E. Radford Acidic conditions stabilise intermediates populated during the folding of Im7 and Im9 J. Mol. Biol. 312 2001 849 863
-
(2001)
J. Mol. Biol.
, vol.312
, pp. 849-863
-
-
Gorski, S.A.1
Capaldi, A.P.2
Kleanthous3
Radford, S.E.C.4
-
7
-
-
0037162450
-
Early kinetic intermediate in the folding of acyl-CoA binding protein detected by fluorescence labeling and ultrarapid mixing
-
K. Teilum, K. Maki, B.B. Kragelund, F.M. Poulsen, and H. Roder Early kinetic intermediate in the folding of acyl-CoA binding protein detected by fluorescence labeling and ultrarapid mixing Proc. Natl Acad. Sci. USA 99 2002 9807 9812
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 9807-9812
-
-
Teilum, K.1
Maki, K.2
Kragelund, B.B.3
Poulsen4
Roder, H.F.M.5
-
8
-
-
0037456298
-
The complete folding pathway of a protein from nanoseconds to microseconds
-
U. Mayor, N.R. Guydosh, C.M. Johnson, J.G. Grossmann, S. Sato, and G.S. Jas The complete folding pathway of a protein from nanoseconds to microseconds Nature 421 2003 863 867
-
(2003)
Nature
, vol.421
, pp. 863-867
-
-
Mayor, U.1
Guydosh, N.R.2
Johnson, C.M.3
Grossmann, J.G.4
Sato5
Jas, G.S.S.6
-
9
-
-
0029868589
-
Nonlinear free energy relationships in Arc Repressor unfolding imply the existence of unstable, native-like folding intermediates
-
T. Jonsson, C.D. Waldburger, and R.T. Sauer Nonlinear free energy relationships in Arc Repressor unfolding imply the existence of unstable, native-like folding intermediates Biochemistry 35 1996 4795 4802
-
(1996)
Biochemistry
, vol.35
, pp. 4795-4802
-
-
Jonsson, T.1
Waldburger2
Sauer, R.T.C.D.3
-
10
-
-
0037225280
-
Evidence for sequential barriers and obligatory intermediates in apparent two-state protein folding
-
I.E. Sanchez, and T. Kiefhaber Evidence for sequential barriers and obligatory intermediates in apparent two-state protein folding J. Mol. Biol. 325 2003 367 376
-
(2003)
J. Mol. Biol.
, vol.325
, pp. 367-376
-
-
Sanchez1
Kiefhaber, T.I.E.2
-
11
-
-
0030057477
-
Evidence for a three-state model of protein folding from kinetic analysis of ubiquitin variants with altered core residues
-
S. Khorasanizadeh, I.D. Peters, and H. Roder Evidence for a three-state model of protein folding from kinetic analysis of ubiquitin variants with altered core residues Nature Struct. Biol. 3 1996 193 205
-
(1996)
Nature Struct. Biol.
, vol.3
, pp. 193-205
-
-
Khorasanizadeh, S.1
Peters2
Roder, H.I.D.3
-
12
-
-
0035170463
-
Ultrarapid mixing experiments reveal that Im7 folds via an on-pathway intermediate
-
A.P. Capaldi, M.C.R. Shastry, C. Kleanthous, H. Roder, and S.E. Radford Ultrarapid mixing experiments reveal that Im7 folds via an on-pathway intermediate Nature Struct. Biol. 8 2001 68 72
-
(2001)
Nature Struct. Biol.
, vol.8
, pp. 68-72
-
-
Capaldi, A.P.1
Shastry, M.C.R.2
Kleanthous, C.3
Roder4
Radford, S.E.H.5
-
13
-
-
0036183221
-
Im7 folding mechanism: Misfolding on a path to the native state
-
A.P. Capaldi, C. Kleanthous, and S.E. Radford Im7 folding mechanism: misfolding on a path to the native state Nature Struct. Biol. 9 2002 209 216
-
(2002)
Nature Struct. Biol.
, vol.9
, pp. 209-216
-
-
Capaldi, A.P.1
Kleanthous2
Radford, S.E.C.3
-
14
-
-
0037423705
-
Structural analysis of the rate-limiting transition states in the folding of Im7 and Im9: Similarities and differences in the folding of homologous proteins
-
C.T. Friel, A.P. Capaldi, and S.E. Radford Structural analysis of the rate-limiting transition states in the folding of Im7 and Im9: similarities and differences in the folding of homologous proteins J. Mol. Biol. 326 2003 293 305
-
(2003)
J. Mol. Biol.
, vol.326
, pp. 293-305
-
-
Friel, C.T.1
Capaldi2
Radford, S.E.A.P.3
-
15
-
-
0031127043
-
Development of multiple sequence approximation within the Agadir model of α-helix formation. Comparison with Zimm-Bragg and Lifson-Roig formalisms
-
V. Munoz, and L. Serrano Development of multiple sequence approximation within the Agadir model of α-helix formation. Comparison with Zimm-Bragg and Lifson-Roig formalisms Biopolymers 41 1997 495 509
-
(1997)
Biopolymers
, vol.41
, pp. 495-509
-
-
Munoz1
Serrano, L.V.2
-
16
-
-
0029900846
-
The magnitude of the backbone conformational entropy change in protein folding
-
J.A. D'Aquino, J. Gomez, V.J. Hilser, K.H. Lee, L.M. Amzel, and E. Freire The magnitude of the backbone conformational entropy change in protein folding Proteins: Struct. Funct. Genet. 25 1996 143 156
-
(1996)
Proteins: Struct. Funct. Genet.
, vol.25
, pp. 143-156
-
-
D'Aquino, J.A.1
Gomez, J.2
Hilser, V.J.3
Lee, K.H.4
Amzel5
Freire, E.L.M.6
-
17
-
-
36549094651
-
Intrachain loops in polymers: Effects of excluded volume
-
H.S. Chan, and K.A. Dill Intrachain loops in polymers: effects of excluded volume J. Chem. Phys. 90 1989 492 509
-
(1989)
J. Chem. Phys.
, vol.90
, pp. 492-509
-
-
Chan1
Dill, K.A.H.S.2
-
18
-
-
0032516433
-
Toward understanding tryptophan fluorescence in proteins
-
Y. Chen, and M.D. Barkley Toward understanding tryptophan fluorescence in proteins Biochemistry 37 1998 9976 9982
-
(1998)
Biochemistry
, vol.37
, pp. 9976-9982
-
-
Chen1
Barkley, M.D.Y.2
-
19
-
-
0032127769
-
A structural comparison of the colicin immunity proteins Im7 and Im9 gives new insights into the molecular determinants of immunity-protein specificity
-
C.A. Dennis, H. Videler, R.A. Paupit, R. Wallis, R. James, G.R. Moore, and C. Kleanthous A structural comparison of the colicin immunity proteins Im7 and Im9 gives new insights into the molecular determinants of immunity-protein specificity Biochem. J. 333 1998 183 191
-
(1998)
Biochem. J.
, vol.333
, pp. 183-191
-
-
Dennis, C.A.1
Videler, H.2
Paupit, R.A.3
Wallis, R.4
James, R.5
Moore6
Kleanthous, C.G.R.7
-
20
-
-
0034964196
-
Computer-based redesign of a protein folding pathway
-
S. Nauli, B. Kuhlman, and D. Baker Computer-based redesign of a protein folding pathway Nature Struct. Biol. 8 2001 602 605
-
(2001)
Nature Struct. Biol.
, vol.8
, pp. 602-605
-
-
Nauli, S.1
Kuhlman2
Baker, D.B.3
-
21
-
-
0036300662
-
Accurate computer-based design of a new backbone conformation in the second turn of Protein L
-
B. Kuhlman, J.W. O'Neill, D.E. Kim, K.Y.L. Zhang, and D. Baker Accurate computer-based design of a new backbone conformation in the second turn of Protein L J. Mol. Biol. 315 2002 471 477
-
(2002)
J. Mol. Biol.
, vol.315
, pp. 471-477
-
-
Kuhlman, B.1
O'Neill, J.W.2
Kim, D.E.3
Zhang4
Baker, D.K.Y.L.5
-
22
-
-
0036829967
-
Complete change of the protein folding transition state upon circular permutation
-
M. Lindberg, J. Tangrot, and M. Oliveberg Complete change of the protein folding transition state upon circular permutation Nature Struct. Biol. 9 2002 818 822
-
(2002)
Nature Struct. Biol.
, vol.9
, pp. 818-822
-
-
Lindberg, M.1
Tangrot2
Oliveberg, M.J.3
-
23
-
-
0029760326
-
Different folding transition states may result in the same native structure
-
A.R. Viguera, L. Serrano, and M. Wilmanns Different folding transition states may result in the same native structure Nature Struct. Biol. 3 1996 874 880
-
(1996)
Nature Struct. Biol.
, vol.3
, pp. 874-880
-
-
Viguera, A.R.1
Serrano2
Wilmanns, M.L.3
-
24
-
-
0032718386
-
Salt-induced detour through compact regions of the protein folding landscape
-
D.E. Otzen, and M. Oliveberg Salt-induced detour through compact regions of the protein folding landscape Proc. Natl Acad. Sci. USA 96 1999 11746 11751
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, pp. 11746-11751
-
-
Otzen1
Oliveberg, M.D.E.2
-
25
-
-
0347627528
-
Destabilization of the Escherichia coli RNase H kinetic intermediate: Switching between a two-state and three-state folding mechanism
-
G.M. Spudich, E.J. Miller, and S. Marqusee Destabilization of the Escherichia coli RNase H kinetic intermediate: switching between a two-state and three-state folding mechanism J. Mol. Biol. 335 2004 609 618
-
(2004)
J. Mol. Biol.
, vol.335
, pp. 609-618
-
-
Spudich, G.M.1
Miller2
Marqusee, S.E.J.3
-
26
-
-
0034283147
-
Specificity in protein-protein interactions: The structural basis for dual recognition in endonuclease colicin-community protein complexes
-
U.C. Kuhlmann, A.J. Pommer, G.R. Moore, R. James, and C. Kleanthous Specificity in protein-protein interactions: the structural basis for dual recognition in endonuclease colicin-community protein complexes J. Mol. Biol. 301 2000 1163 1178
-
(2000)
J. Mol. Biol.
, vol.301
, pp. 1163-1178
-
-
Kuhlmann, U.C.1
Pommer, A.J.2
Moore, G.R.3
James4
Kleanthous, C.R.5
-
27
-
-
0035193250
-
Diffusion-collision model study of misfolding in a four helix bundle protein
-
C. Beck, X. Siemens, and D.L. Weaver Diffusion-collision model study of misfolding in a four helix bundle protein Biophys. J. 81 2001 3105 3115
-
(2001)
Biophys. J.
, vol.81
, pp. 3105-3115
-
-
Beck, C.1
Siemens2
Weaver, D.L.X.3
-
28
-
-
1042279571
-
Comparison of the transition state ensembles for folding of Im7 and Im9 determined using all-atom molecular dynamics simulations with phi value restraints
-
E. Paci, C.T. Friel, K. Lindorff-Larsen, S.E. Radford, M. Karplus, and M. Vendruscolo Comparison of the transition state ensembles for folding of Im7 and Im9 determined using all-atom molecular dynamics simulations with phi value restraints Proteins: Struct. Func. Genet. 54 2004 513 525
-
(2004)
Proteins: Struct. Func. Genet.
, vol.54
, pp. 513-525
-
-
Paci, E.1
Friel, C.T.2
Lindorff-Larsen, K.3
Radford, S.E.4
Karplus5
Vendruscolo, M.M.6
-
29
-
-
0031588693
-
Folding kinetics of Che Y mutants with enhanced native alpha-helix propensities
-
E. Lopez-Hernandez, P. Cronet, L. Serrano, and V. Munoz Folding kinetics of Che Y mutants with enhanced native alpha-helix propensities J. Mol. Biol. 266 1997 610 620
-
(1997)
J. Mol. Biol.
, vol.266
, pp. 610-620
-
-
Lopez-Hernandez, E.1
Cronet, P.2
Serrano3
Munoz, V.L.4
-
30
-
-
0035818563
-
Using flexible loop mimetics to extend phi-value analysis to secondary structure interactions
-
N. Ferguson, J.R. Pires, F. Toepert, C.M. Johnson, Y.P. Pan, and R. Volkmer-Engert Using flexible loop mimetics to extend phi-value analysis to secondary structure interactions Proc. Natl Acad. Sci. USA 98 2001 13008 13013
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 13008-13013
-
-
Ferguson, N.1
Pires, J.R.2
Toepert, F.3
Johnson, C.M.4
Pan5
Volkmer-Engert, R.Y.P.6
-
31
-
-
0036074173
-
Fast-folding protein kinetics, hidden intermediates, and the sequential stabilization model
-
S.B. Ozkan, K.A. Dill, and I. Bahar Fast-folding protein kinetics, hidden intermediates, and the sequential stabilization model Protein Sci. 11 2002 1958 1970
-
(2002)
Protein Sci.
, vol.11
, pp. 1958-1970
-
-
Ozkan, S.B.1
Dill2
Bahar, I.K.A.3
-
32
-
-
0033535951
-
Intermediates can accelerate protein folding
-
C. Wagner, and T. Kiefhaber Intermediates can accelerate protein folding Proc. Natl Acad. Sci. USA 96 1999 6716 6721
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, pp. 6716-6721
-
-
Wagner1
Kiefhaber, T.C.2
-
34
-
-
0030623698
-
Favourable native-like helical local interactions can accelerate protein folding
-
A.R. Viguera, V. Villegas, F.X. Aviles, and L. Serrano Favourable native-like helical local interactions can accelerate protein folding Fold. Des. 2 1997 23 33
-
(1997)
Fold. Des.
, vol.2
, pp. 23-33
-
-
Viguera, A.R.1
Villegas, V.2
Aviles3
Serrano, L.F.X.4
-
35
-
-
0032555115
-
Synergy between simulation and experiment in describing the energy landscape of protein folding
-
A.G. Ladurner, L.S. Itzhaki, V. Daggett, and A.R. Fersht Synergy between simulation and experiment in describing the energy landscape of protein folding Proc. Natl Acad. Sci. USA 95 1998 8473 8478
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 8473-8478
-
-
Ladurner, A.G.1
Itzhaki, L.S.2
Daggett3
Fersht, A.R.V.4
-
36
-
-
0030627747
-
Speeding up protein folding: Mutations that increase the rate at which Rop folds and unfolds by over four orders of magnitude
-
M. Munson, K.S. Anderson, and L. Regan Speeding up protein folding: mutations that increase the rate at which Rop folds and unfolds by over four orders of magnitude Fold. Des. 2 1997 77 87
-
(1997)
Fold. Des.
, vol.2
, pp. 77-87
-
-
Munson, M.1
Anderson2
Regan, L.K.S.3
-
37
-
-
0242383943
-
Improved Go-like models demonstrate the robustness of protein folding mechanisms towards non-native interactions
-
J. Karanicolas, and C.L. Brooks III Improved Go-like models demonstrate the robustness of protein folding mechanisms towards non-native interactions J. Mol. Biol. 334 2003 309 325
-
(2003)
J. Mol. Biol.
, vol.334
, pp. 309-325
-
-
Brooks III, C.L.1
Karanicolas, J.2
-
39
-
-
0023697408
-
Unfolding free energy changes determined by the linear extrapolation method. 1. Unfolding of phenylmethanesulfonyl alpha-chymotrypsin using different denaturants
-
M.M. Santoro, and D.W. Bolen Unfolding free energy changes determined by the linear extrapolation method. 1. Unfolding of phenylmethanesulfonyl alpha-chymotrypsin using different denaturants Biochemistry 27 1988 8063 8068
-
(1988)
Biochemistry
, vol.27
, pp. 8063-8068
-
-
Santoro1
Bolen, D.W.M.M.2
-
41
-
-
0026244229
-
Molscript-a program to produce both detailed and schematic plots of protein structures
-
P.J. Kraulis Molscript-a program to produce both detailed and schematic plots of protein structures J. Appl. Crystallog. 24 1991 946 950
-
(1991)
J. Appl. Crystallog.
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
-
42
-
-
0030815133
-
Raster 3D: Photorealistic molecular graphics
-
E.A. Merrit, and D.J. Bacon Raster 3D: Photorealistic molecular graphics Methods Enzymol. 277 1997 505 524
-
(1997)
Methods Enzymol.
, vol.277
, pp. 505-524
-
-
Merrit1
Bacon, D.J.E.A.2
|