-
1
-
-
0025268321
-
Rational design of peptide-based HIV proteinase inhibitors
-
Roberts, N. A., Martin, J. A., Kinchington, D., Broadhurst, A. V., Craig, J. C., Duncan, I. B., Galpin, S. A., Handa, B. K., Kay, J., Krohn, A., et. al. (1990) Rational design of peptide-based HIV proteinase inhibitors. Science 248, 358-361.
-
(1990)
Science
, vol.248
, pp. 358-361
-
-
Roberts, N.A.1
Martin, J.A.2
Kinchington, D.3
Broadhurst, A.V.4
Craig, J.C.5
Duncan, I.B.6
Galpin, S.A.7
Handa, B.K.8
Kay, J.9
Krohn, A.10
et., al.11
-
2
-
-
33845339435
-
Protease Inhibitors in the Clinic
-
Abbenante, G., and Fairlie, D. P. (2005) Protease Inhibitors in the Clinic. Med. Chem. 1, 1-33.
-
(2005)
Med. Chem
, vol.1
, pp. 1-33
-
-
Abbenante, G.1
Fairlie, D.P.2
-
3
-
-
0031804609
-
Inhibitors of HIV-1 protease: A major success of structure-assisted drug design
-
Wlodawer, A., and Vondrasek, J. (1998) Inhibitors of HIV-1 protease: a major success of structure-assisted drug design. Annu. Rev. Biophys. Biomol. Struct. 27, 249-284.
-
(1998)
Annu. Rev. Biophys. Biomol. Struct
, vol.27
, pp. 249-284
-
-
Wlodawer, A.1
Vondrasek, J.2
-
4
-
-
0033915678
-
Recent developments in structure-based drug design
-
Klebe, G. (2000) Recent developments in structure-based drug design. J. Mol. Med. 78, 269-281.
-
(2000)
J. Mol. Med
, vol.78
, pp. 269-281
-
-
Klebe, G.1
-
5
-
-
35348829315
-
Darunavir, a conceptually new HIV-1 protease inhibitor for the treatment of drug-resistant HIV
-
Ghosh, A. K., Dawson, Z. L., and Mitsuya, H. (2007) Darunavir, a conceptually new HIV-1 protease inhibitor for the treatment of drug-resistant HIV. Bioorg. Med. Chem. 15, 7576-7580.
-
(2007)
Bioorg. Med. Chem
, vol.15
, pp. 7576-7580
-
-
Ghosh, A.K.1
Dawson, Z.L.2
Mitsuya, H.3
-
6
-
-
0033921617
-
Phenotypic and genotypic analysis of clinical HIV-1 isolates reveals extensive protease inhibitor cross-resistance: A survey of over 6000 samples
-
Hertogs, K., Bloor, S., Kemp, S. D., Van den Eynde, C., Alcorn, T. M., Pauwels, R., Van Houtte, M., Staszewski, S., Miller, V., and Larder, B. A. (2000) Phenotypic and genotypic analysis of clinical HIV-1 isolates reveals extensive protease inhibitor cross-resistance: a survey of over 6000 samples. Aids 14, 1203-1210.
-
(2000)
Aids
, vol.14
, pp. 1203-1210
-
-
Hertogs, K.1
Bloor, S.2
Kemp, S.D.3
Van den Eynde, C.4
Alcorn, T.M.5
Pauwels, R.6
Van Houtte, M.7
Staszewski, S.8
Miller, V.9
Larder, B.A.10
-
7
-
-
1442355578
-
HIV drug resistance
-
Clavel, F., and Hance, A. J. (2004) HIV drug resistance. N. Engl. J. Med. 350, 1023-1035.
-
(2004)
N. Engl. J. Med
, vol.350
, pp. 1023-1035
-
-
Clavel, F.1
Hance, A.J.2
-
8
-
-
0036882390
-
Structure and Mechanism of the Pepsin-Like Family of Aspartic Peptidases
-
Dunn, B. M. (2002) Structure and Mechanism of the Pepsin-Like Family of Aspartic Peptidases. Chem. Rev. 102, 4431-4458.
-
(2002)
Chem. Rev
, vol.102
, pp. 4431-4458
-
-
Dunn, B.M.1
-
9
-
-
0034778987
-
Follow the protons: A low-barrier hydrogen bond unifies the mechanisms of the aspartic proteases
-
Northrop, D. B. (2001) Follow the protons: a low-barrier hydrogen bond unifies the mechanisms of the aspartic proteases. Acc. Chem. Res. 34, 790-797.
-
(2001)
Acc. Chem. Res
, vol.34
, pp. 790-797
-
-
Northrop, D.B.1
-
10
-
-
0034307230
-
Low-barrier hydrogen bonds and enzymatic catalysis
-
Cleland, W. W. (2000) Low-barrier hydrogen bonds and enzymatic catalysis. Arch. Biochem. Biophys. 382, 1-5.
-
(2000)
Arch. Biochem. Biophys
, vol.382
, pp. 1-5
-
-
Cleland, W.W.1
-
11
-
-
0027050188
-
Direct observation by X-ray analysis of the tetrahedral "intermediate" of aspartic proteinases
-
Veerapandian, B., Cooper, J. B., Sali, A., Blundell, T. L., Rosati, R. L., Dominy, B. W., Damon, D. B., and Hoover, D. J. (1992) Direct observation by X-ray analysis of the tetrahedral "intermediate" of aspartic proteinases. Protein Sci. 1, 322-328.
-
(1992)
Protein Sci
, vol.1
, pp. 322-328
-
-
Veerapandian, B.1
Cooper, J.B.2
Sali, A.3
Blundell, T.L.4
Rosati, R.L.5
Dominy, B.W.6
Damon, D.B.7
Hoover, D.J.8
-
12
-
-
0026720426
-
Crystallographic analysis of transition state mimics bound to penicillopepsin: Difluorostatine- and difluorostatone-containing peptides
-
James, M. N., Sielecki, A. R., Hayakawa, K., and Gelb, M. H. (1992) Crystallographic analysis of transition state mimics bound to penicillopepsin: difluorostatine- and difluorostatone-containing peptides. Biochemistry 31, 3872-3886.
-
(1992)
Biochemistry
, vol.31
, pp. 3872-3886
-
-
James, M.N.1
Sielecki, A.R.2
Hayakawa, K.3
Gelb, M.H.4
-
13
-
-
0035818441
-
A neutron Laue diffraction study of endothiapepsin: Implications for the aspartic proteinase mechanism
-
Coates, L., Erskine, P. T., Wood, S. P., Myles, D. A., and Cooper, J. B. (2001) A neutron Laue diffraction study of endothiapepsin: implications for the aspartic proteinase mechanism. Biochemistry 40, 13149-13157.
-
(2001)
Biochemistry
, vol.40
, pp. 13149-13157
-
-
Coates, L.1
Erskine, P.T.2
Wood, S.P.3
Myles, D.A.4
Cooper, J.B.5
-
14
-
-
0026005186
-
Human immunodeficiency virus-1 protease. 2. Use of pH rate studies and solvent kinetic isotope effects to elucidate details of chemical mechanism
-
Hyland, L. J., Tomaszek, T. A., Jr., and Meek, T. D. (1991) Human immunodeficiency virus-1 protease. 2. Use of pH rate studies and solvent kinetic isotope effects to elucidate details of chemical mechanism. Biochemistry 30, 8454-8463.
-
(1991)
Biochemistry
, vol.30
, pp. 8454-8463
-
-
Hyland, L.J.1
Tomaszek Jr., T.A.2
Meek, T.D.3
-
15
-
-
0025829331
-
Structure at 2.5-Å resolution of chemically synthesized human immunodeficiency virus type 1 protease complexed with a hydroxyethylene-based inhibitor
-
Jaskolski, M., Tomasselli, A. G., Sawyer, T. K., Staples, D. G., Heinrikson, R. L., Schneider, J., Kent, S. B., and Wlodawer, A. (1991) Structure at 2.5-Å resolution of chemically synthesized human immunodeficiency virus type 1 protease complexed with a hydroxyethylene-based inhibitor. Biochemistry 30, 1600-1609.
-
(1991)
Biochemistry
, vol.30
, pp. 1600-1609
-
-
Jaskolski, M.1
Tomasselli, A.G.2
Sawyer, T.K.3
Staples, D.G.4
Heinrikson, R.L.5
Schneider, J.6
Kent, S.B.7
Wlodawer, A.8
-
16
-
-
0029863567
-
Inhibition and catalytic mechanism of HIV-1 aspartic protease
-
Silva, A. M., Cachau, R. E., Sham, H. L., and Erickson, J. W. (1996) Inhibition and catalytic mechanism of HIV-1 aspartic protease. J. Mol. Biol. 255, 321-346.
-
(1996)
J. Mol. Biol
, vol.255
, pp. 321-346
-
-
Silva, A.M.1
Cachau, R.E.2
Sham, H.L.3
Erickson, J.W.4
-
17
-
-
0034283345
-
How does a symmetric dimer recognize an asymmetric substrate? A substrate complex of HIV-1 protease
-
Prabu-Jeyabalan, M., Nalivaika, E., and Schiffer, C. A. (2000) How does a symmetric dimer recognize an asymmetric substrate? A substrate complex of HIV-1 protease. J. Mol. Biol. 301, 1207-1220.
-
(2000)
J. Mol. Biol
, vol.301
, pp. 1207-1220
-
-
Prabu-Jeyabalan, M.1
Nalivaika, E.2
Schiffer, C.A.3
-
18
-
-
0036121219
-
Substrate shape determines specificity of recognition for HIV-1 protease: Analysis of crystal structures of six substrate complexes
-
Prabu-Jeyabalan, M., Nalivaika, E., and Schiffer, C. A. (2002) Substrate shape determines specificity of recognition for HIV-1 protease: analysis of crystal structures of six substrate complexes. Structure (Cambridge) 10, 369-381.
-
(2002)
Structure (Cambridge)
, vol.10
, pp. 369-381
-
-
Prabu-Jeyabalan, M.1
Nalivaika, E.2
Schiffer, C.A.3
-
19
-
-
0029814481
-
Three-dimensional structures of HIV-1 and SIV protease product complexes
-
Rose, R. B., Craik, C. S., Douglas, N. L., and Stroud, R. M. (1996) Three-dimensional structures of HIV-1 and SIV protease product complexes. Biochemistry 35, 12933-12944.
-
(1996)
Biochemistry
, vol.35
, pp. 12933-12944
-
-
Rose, R.B.1
Craik, C.S.2
Douglas, N.L.3
Stroud, R.M.4
-
20
-
-
33845498406
-
Crystal structure of HIV-1 protease in situ product complex and observation of a low-barrier hydrogen bond between catalytic aspartates
-
Das, A., Prashar, V., Mahale, S., Serre, L., Ferrer, J. L., and Hosur, M. V. (2006) Crystal structure of HIV-1 protease in situ product complex and observation of a low-barrier hydrogen bond between catalytic aspartates. Proc. Natl. Acad. Sci. U.S.A. 103, 18464-18469.
-
(2006)
Proc. Natl. Acad. Sci. U.S.A
, vol.103
, pp. 18464-18469
-
-
Das, A.1
Prashar, V.2
Mahale, S.3
Serre, L.4
Ferrer, J.L.5
Hosur, M.V.6
-
21
-
-
0032584293
-
Structural basis for specificity of retroviral proteases
-
Wu, J., Adomat, J. M., Ridky, T. W., Louis, J. M., Leis, J., Harrison, R. W., and Weber, I. T. (1998) Structural basis for specificity of retroviral proteases. Biochemistry 37, 4518-4526.
-
(1998)
Biochemistry
, vol.37
, pp. 4518-4526
-
-
Wu, J.1
Adomat, J.M.2
Ridky, T.W.3
Louis, J.M.4
Leis, J.5
Harrison, R.W.6
Weber, I.T.7
-
22
-
-
0037223718
-
Viability of a drug-resistant human immunodeficiency virus type 1 protease variant: Structural insights for better antiviral therapy
-
Prabu-Jeyabalan, M., Nalivaika, E. A., King, N. M., and Schiffer, C. A. (2003) Viability of a drug-resistant human immunodeficiency virus type 1 protease variant: structural insights for better antiviral therapy. J. Virol. 77, 1306-1315.
-
(2003)
J. Virol
, vol.77
, pp. 1306-1315
-
-
Prabu-Jeyabalan, M.1
Nalivaika, E.A.2
King, N.M.3
Schiffer, C.A.4
-
23
-
-
0028834766
-
Regioselective Structural and Functional Mimicry of Peptides - Design of Hydrolytically-Stable Cyclic Peptidomimetic Inhibitors of Hiv-1 Protease
-
Abbenante, G., March, D. R., Bergman, D. A., Hunt, P. A., Garnham, B., Dancer, R. J., Martin, J. L., and Fairlie, D. P. (1995) Regioselective Structural and Functional Mimicry of Peptides - Design of Hydrolytically-Stable Cyclic Peptidomimetic Inhibitors of Hiv-1 Protease. J. Am. Chem. Soc. 117, 10220-10226.
-
(1995)
J. Am. Chem. Soc
, vol.117
, pp. 10220-10226
-
-
Abbenante, G.1
March, D.R.2
Bergman, D.A.3
Hunt, P.A.4
Garnham, B.5
Dancer, R.J.6
Martin, J.L.7
Fairlie, D.P.8
-
24
-
-
0029819214
-
A novel bicyclic enzyme inhibitor as a consensus peptidomimetic for the receptor-bound conformations of 12 peptidic inhibitors of HIV-1 protease
-
Reid, R. C., March, D. R., Dooley, M. J., Bergman, D. A., Abbenante, G., and Fairlie, D. P. (1996) A novel bicyclic enzyme inhibitor as a consensus peptidomimetic for the receptor-bound conformations of 12 peptidic inhibitors of HIV-1 protease. J. Am. Chem. Soc. 118, 8511-8517.
-
(1996)
J. Am. Chem. Soc
, vol.118
, pp. 8511-8517
-
-
Reid, R.C.1
March, D.R.2
Dooley, M.J.3
Bergman, D.A.4
Abbenante, G.5
Fairlie, D.P.6
-
25
-
-
0029926111
-
Substrate-based cyclic peptidomimetics of Phe-Ile-Val that inhibit HIV-1 protease using a novel enzyme-binding mode
-
March, D. R., Abbenante, G., Bergman, D. A., Brinkworth, R. I., Wickramasinghe, W., Begun, J., Martin, J. L., and Fairlie, D. P. (1996) Substrate-based cyclic peptidomimetics of Phe-Ile-Val that inhibit HIV-1 protease using a novel enzyme-binding mode. J. Am. Chem. Soc. 118, 3375-3379.
-
(1996)
J. Am. Chem. Soc
, vol.118
, pp. 3375-3379
-
-
March, D.R.1
Abbenante, G.2
Bergman, D.A.3
Brinkworth, R.I.4
Wickramasinghe, W.5
Begun, J.6
Martin, J.L.7
Fairlie, D.P.8
-
26
-
-
0033226493
-
Conformational homogeneity in molecular recognition by proteolytic enzymes
-
Tyndall, J. D. A., and Fairlie, D. P. (1999) Conformational homogeneity in molecular recognition by proteolytic enzymes. J. Mol. Recognit. 12, 363-370.
-
(1999)
J. Mol. Recognit
, vol.12
, pp. 363-370
-
-
Tyndall, J.D.A.1
Fairlie, D.P.2
-
27
-
-
0034699496
-
Synthesis, stability, antiviral activity, and protease-bound structures of substrate-mimicking constrained macrocyclic inhibitors of HIV-1 protease
-
Tyndall, J. D. A., Reid, R. C., Tyssen, D. P., Jardine, D. K., Todd, B., Passmore, M., March, D. R., Pattenden, L. K., Bergman, D. A., Alewood, D., Hu, S. H., Alewood, P. F., Birch, C. J., Martin, J. L., and Fairlie, D. P. (2000) Synthesis, stability, antiviral activity, and protease-bound structures of substrate-mimicking constrained macrocyclic inhibitors of HIV-1 protease. J. Med. Chem. 43, 3495-4504.
-
(2000)
J. Med. Chem
, vol.43
, pp. 3495-4504
-
-
Tyndall, J.D.A.1
Reid, R.C.2
Tyssen, D.P.3
Jardine, D.K.4
Todd, B.5
Passmore, M.6
March, D.R.7
Pattenden, L.K.8
Bergman, D.A.9
Alewood, D.10
Hu, S.H.11
Alewood, P.F.12
Birch, C.J.13
Martin, J.L.14
Fairlie, D.P.15
-
28
-
-
0034611591
-
Conformational selection of inhibitors and substrates by proteolytic enzymes: Implications for drug design and polypeptide processing
-
Fairlie, D. P., Tyndall, J. D. A., Reid, R. C., Wong, A. K., Abbenante, G., Scanlon, M. J., March, D. R., Bergman, D. A., Chai, C. L., and Burkett, B. A. (2000) Conformational selection of inhibitors and substrates by proteolytic enzymes: implications for drug design and polypeptide processing. J. Med. Chem. 43, 1271-1281.
-
(2000)
J. Med. Chem
, vol.43
, pp. 1271-1281
-
-
Fairlie, D.P.1
Tyndall, J.D.A.2
Reid, R.C.3
Wong, A.K.4
Abbenante, G.5
Scanlon, M.J.6
March, D.R.7
Bergman, D.A.8
Chai, C.L.9
Burkett, B.A.10
-
29
-
-
17244364283
-
Proteases universally recognize beta strands in their active sites
-
Tyndall, J. D., Nall, T., and Fairlie, D. P. (2005) Proteases universally recognize beta strands in their active sites. Chem. Rev. 105, 973-1000.
-
(2005)
Chem. Rev
, vol.105
, pp. 973-1000
-
-
Tyndall, J.D.1
Nall, T.2
Fairlie, D.P.3
-
30
-
-
0014211618
-
On the size of the active site in proteases. I. Papain
-
Schechter, I., and Berger, A. (1967) On the size of the active site in proteases. I. Papain. Biochem. Biophys. Res. Commun. 27, 157-162.
-
(1967)
Biochem. Biophys. Res. Commun
, vol.27
, pp. 157-162
-
-
Schechter, I.1
Berger, A.2
-
31
-
-
0033594865
-
Molecular recognition of macrocyclic peptidomimetic inhibitors by HIV-l protease
-
Martin, J. L., Begun, J., Schindeler, A., Wickramasinghe, W. A., Alewood, D., Alewood, P. F., Bergman, D. A., Brinkworth, R. I., Abbenante, G., March, D. R., Reid, R. C., and Fairlie, D. P. (1999) Molecular recognition of macrocyclic peptidomimetic inhibitors by HIV-l protease. Biochemistry 38, 7978-7988.
-
(1999)
Biochemistry
, vol.38
, pp. 7978-7988
-
-
Martin, J.L.1
Begun, J.2
Schindeler, A.3
Wickramasinghe, W.A.4
Alewood, D.5
Alewood, P.F.6
Bergman, D.A.7
Brinkworth, R.I.8
Abbenante, G.9
March, D.R.10
Reid, R.C.11
Fairlie, D.P.12
-
32
-
-
1642389967
-
Countering cooperative effects in protease inhibitors using constrained beta-strand-mimicking templates in focused combinatorial libraries
-
Reid, R. C., Pattenden, L. K., Tyndall, J. D., Martin, J. L., Walsh, T., and Fairlie, D. P. (2004) Countering cooperative effects in protease inhibitors using constrained beta-strand-mimicking templates in focused combinatorial libraries. J. Med. Chem. 47, 1641-1651.
-
(2004)
J. Med. Chem
, vol.47
, pp. 1641-1651
-
-
Reid, R.C.1
Pattenden, L.K.2
Tyndall, J.D.3
Martin, J.L.4
Walsh, T.5
Fairlie, D.P.6
-
33
-
-
0023714070
-
Enzymatic activity of a synthetic 99 residue protein corresponding to the putative HIV-1 protease
-
Schneider, J., and Kent, S. B. (1988) Enzymatic activity of a synthetic 99 residue protein corresponding to the putative HIV-1 protease. Cell 54, 363-368.
-
(1988)
Cell
, vol.54
, pp. 363-368
-
-
Schneider, J.1
Kent, S.B.2
-
34
-
-
0001870820
-
Kinetic Properties of HIV-1 Protease Produced by Total Chemical Synthesis with Cysteine Residues Replaced by Isosteric L-Alpha-Amino-N-Butyric Acid
-
Bergman, D. A., Alewood, D., Alewood, P. F., Andrews, J. L., Brinkworth, R. I., Englebretsen, D. R., and Kent, S. B. H. (1995) Kinetic Properties of HIV-1 Protease Produced by Total Chemical Synthesis with Cysteine Residues Replaced by Isosteric L-Alpha-Amino-N-Butyric Acid. Lett. Pept. Sci. 2, 99-107.
-
(1995)
Lett. Pept. Sci
, vol.2
, pp. 99-107
-
-
Bergman, D.A.1
Alewood, D.2
Alewood, P.F.3
Andrews, J.L.4
Brinkworth, R.I.5
Englebretsen, D.R.6
Kent, S.B.H.7
-
35
-
-
0025663423
-
A simple, continuous fluorometric assay for HIV protease
-
Toth, M. V., and Marshall, G. R. (1990) A simple, continuous fluorometric assay for HIV protease. Int. J. Pept. Protein Res. 36, 544-550.
-
(1990)
Int. J. Pept. Protein Res
, vol.36
, pp. 544-550
-
-
Toth, M.V.1
Marshall, G.R.2
-
36
-
-
0027160646
-
Large scale purification and refolding of HIV-1 protease from Escherichia coli inclusion bodies
-
Hui, J. O., Tomasselli, A. G., Reardon, I. M., Lull, J. M., Brunner, D. P., Tomich, C. S., and Heinrikson, R. L. (1993) Large scale purification and refolding of HIV-1 protease from Escherichia coli inclusion bodies. J. Protein Chem. 12, 323-327.
-
(1993)
J. Protein Chem
, vol.12
, pp. 323-327
-
-
Hui, J.O.1
Tomasselli, A.G.2
Reardon, I.M.3
Lull, J.M.4
Brunner, D.P.5
Tomich, C.S.6
Heinrikson, R.L.7
-
37
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski, Z., and Minor, W. (1997) Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276, 307-326.
-
(1997)
Methods Enzymol
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
38
-
-
0026597444
-
Free R value: A novel statistical quantity for assessing the accuracy of crystal structures
-
Brunger, A. T. (1992) Free R value: a novel statistical quantity for assessing the accuracy of crystal structures. Nature 355, 472-475.
-
(1992)
Nature
, vol.355
, pp. 472-475
-
-
Brunger, A.T.1
-
39
-
-
84889120137
-
-
Jones, T. A., Zou, J. Y., Cowan, S. W., and Kjeldgaard (1991) Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A 47 (Pari 2), 110-119.
-
Jones, T. A., Zou, J. Y., Cowan, S. W., and Kjeldgaard (1991) Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A 47 (Pari 2), 110-119.
-
-
-
-
40
-
-
0023140814
-
Crystallographic R factor refinement by molecular dynamics
-
Brunger, A. T., Kuriyan, J., and Karplus, M. (1987) Crystallographic R factor refinement by molecular dynamics. Science 245, 458-460.
-
(1987)
Science
, vol.245
, pp. 458-460
-
-
Brunger, A.T.1
Kuriyan, J.2
Karplus, M.3
-
41
-
-
84901961522
-
Slow-cooling protocols for crystallographic refinement by simulated annealing
-
Brunger, A. T., Krukowski, A., and Erickson, J. W. (1990) Slow-cooling protocols for crystallographic refinement by simulated annealing. Acta Crystallogr. A 46 (Part 7), 585-593.
-
(1990)
Acta Crystallogr. A
, vol.46
, Issue.PART 7
, pp. 585-593
-
-
Brunger, A.T.1
Krukowski, A.2
Erickson, J.W.3
-
42
-
-
0021470578
-
OMITMAP: An electron density map suitable for the examination of errors in a macromolecular model
-
Bhat, T. N., and Cohen, G. H. (1984) OMITMAP: an electron density map suitable for the examination of errors in a macromolecular model. J. Appl. Crystallogr. 17, 244-248.
-
(1984)
J. Appl. Crystallogr
, vol.17
, pp. 244-248
-
-
Bhat, T.N.1
Cohen, G.H.2
-
43
-
-
3543012707
-
Crystallography and NMR system (CNS): A new software system for macromolecular structure determination
-
Brunger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J.-S., Kuszewski, J., Nilges, N., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Crystallography and NMR system (CNS): A new software system for macromolecular structure determination. Acta Crystallogr. D54, 905-921.
-
(1998)
Acta Crystallogr
, vol.D54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.-S.7
Kuszewski, J.8
Nilges, N.9
Pannu, N.S.10
Read, R.J.11
Rice, L.M.12
Simonson, T.13
Warren, G.L.14
-
44
-
-
0003834618
-
-
Yale University
-
Brunger, A. T., Adams, P. D., Clore, G. M., Delano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J.-S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (2001) Crystallography & NMR System, Yale University.
-
(2001)
Crystallography & NMR System
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
Delano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.-S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
Read, R.J.11
Rice, L.M.12
Simonson, T.13
Warren, G.L.14
-
45
-
-
7544226311
-
PRODRG: A tool for high-throughput crystallography of protein-ligand complexes
-
Schuttelkopf, A. W., and van Aalten, D. M. (2004) PRODRG: a tool for high-throughput crystallography of protein-ligand complexes. Acta Crystallogr., Sect. D: Biol. Crystallogr. 60, 1355-1363.
-
(2004)
Acta Crystallogr., Sect. D: Biol. Crystallogr
, vol.60
, pp. 1355-1363
-
-
Schuttelkopf, A.W.1
van Aalten, D.M.2
-
46
-
-
0000243829
-
PROCHECK: A program to check the stereochemical quality of protein structures
-
Laskowski, R. A., MacArthur, M. W., Moss, D. S., and Thornton, J. M. (1993) PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Crystallogr. 26, 283-291.
-
(1993)
J. Appl. Crystallogr
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
47
-
-
0036147360
-
Altered substrate specificity of drug-resistant human immunodeficiency virus type 1 protease
-
Dauber, D. S., Ziermann, R., Parkin, N., Maly, D. J., Mahrus, S., Harris, J. L., Ellman, J. A., Petropoulos, C., and Craik, C. S. (2002) Altered substrate specificity of drug-resistant human immunodeficiency virus type 1 protease. J. Virol. 76, 1359-1368.
-
(2002)
J. Virol
, vol.76
, pp. 1359-1368
-
-
Dauber, D.S.1
Ziermann, R.2
Parkin, N.3
Maly, D.J.4
Mahrus, S.5
Harris, J.L.6
Ellman, J.A.7
Petropoulos, C.8
Craik, C.S.9
-
48
-
-
33646110274
-
Mechanism of drug resistance revealed by the crystal structure of the unliganded HIV-1 protease with F53L mutation
-
Liu, F., Kovalevsky, A. Y., Louis, J. M., Boross, P. I., Wang, Y. F., Harrison, R. W., and Weber, I. T. (2006) Mechanism of drug resistance revealed by the crystal structure of the unliganded HIV-1 protease with F53L mutation. J. Mol. Biol. 358, 1191-1199.
-
(2006)
J. Mol. Biol
, vol.358
, pp. 1191-1199
-
-
Liu, F.1
Kovalevsky, A.Y.2
Louis, J.M.3
Boross, P.I.4
Wang, Y.F.5
Harrison, R.W.6
Weber, I.T.7
-
49
-
-
11144356514
-
A phenylnorstatine inhibitor binding to HIV-1 protease: Geometry, protonation, and subsite-pocket interactions analyzed at atomic resolution
-
Brynda, J., Rezacova, P., Fabry, M., Horejsi, M., Stouracova, R., Sedlacek, J., Soucek, M., Hradilek, M., Lepsik, M., and Konvalinka, J. (2004) A phenylnorstatine inhibitor binding to HIV-1 protease: geometry, protonation, and subsite-pocket interactions analyzed at atomic resolution. J. Med. Chem. 47, 2030-1036.
-
(2004)
J. Med. Chem
, vol.47
, pp. 2030-1036
-
-
Brynda, J.1
Rezacova, P.2
Fabry, M.3
Horejsi, M.4
Stouracova, R.5
Sedlacek, J.6
Soucek, M.7
Hradilek, M.8
Lepsik, M.9
Konvalinka, J.10
-
50
-
-
0035850539
-
Ab initio molecular dynamics-based assignment of the protonation state of pepstatin A/HIV-1 protease cleavage site
-
Piana, S., Sebastiani, D., Carloni, P., and Parrinello, M. (2001) Ab initio molecular dynamics-based assignment of the protonation state of pepstatin A/HIV-1 protease cleavage site. J. Am. Chem. Soc. 123, 8730-8737.
-
(2001)
J. Am. Chem. Soc
, vol.123
, pp. 8730-8737
-
-
Piana, S.1
Sebastiani, D.2
Carloni, P.3
Parrinello, M.4
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