A new perspective on the evolutionary history of western European Sorex araneus group revealed by paternal and maternal molecular markers

Molecular Phylogenetics and Evolution

Volumn 47, Issue 1, 2008, Pages 237-250

  Yannic, G ^a   Basset, P ^a   Hausser, J ^a  

^a UNIVERSITY OF LAUSANNE   (Switzerland)

Author keywords

Common shrew; Introgression; Karyotypic structure; mtDNA; Sex specific loci; Sorex araneus group; Y chromosome

Indexed keywords

DNA; MITOCHONDRIAL DNA; PRIMER DNA;

ANIMAL; ARTICLE; FEMALE; GENETIC POLYMORPHISM; GENETICS; GENOME IMPRINTING; ISOLATION AND PURIFICATION; MALE; MOLECULAR EVOLUTION; NUCLEOTIDE SEQUENCE; PHYLOGENY; SHREW;

ANIMALS; BASE SEQUENCE; DNA; DNA PRIMERS; DNA, MITOCHONDRIAL; EVOLUTION, MOLECULAR; FEMALE; GENOMIC IMPRINTING; MALE; PHYLOGENY; POLYMORPHISM, GENETIC; SHREWS;

SOREX ARANEUS;

EID: 41049094555     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2008.01.029     Document Type: Article

References (77)

1. Allendorf F., and Seeb L. Concordance of genetic divergence among sockeye salmon populations at allozyme, nuclear DNA, and mitochondrial DNA markers. Evolution 54 (2000) 640-651
2. Andersson A.C., Narain Y., Tegelstrom H., and Fredga K. No apparent reduction of gene flow in a hybrid zone between the West and North European karyotypic groups of the common shrew, Sorex araneus. Mol. Ecol. 13 (2004) 1205-1215
3. Arnold M. Evolution Through Genetic Exchange (2006), Oxford University Press, Oxford
4. Avise J. Phylogeography: The History and Formation of Species (2000), Harvard University Press, Cambridge
5. Basset P., Yannic G., and Hausser J. Genetic and karyotypic structure in the shrews of the Sorex araneus group: are they independent?. Mol. Ecol. 15 (2006) 1577-1587
6. Bilton D.T., Mirol P.M., Mascheretti S., Fredga K., Zima J., and Searle J.B. Mediterranean Europe as an area of endemism for small mammals rather than a source for northwards postglacial colonization. Proc. R. Soc. Lond. B Biol. Sci. 265 (1998) 1219-1226
7. Brünner H., Lugon-Moulin N., Balloux F., Fumagalli L., and Hausser J. A taxonomical re-evaluation of the Valais chromosome race of the common shrew Sorex araneus (Insectivora: Soricidae). Acta Theriol. 47 (2002) 245-275
8. Brünner H., Lugon-Moulin N., and Hausser J. Alps, genes, and chromosomes: their role in the formation of species in the Sorex araneus group (Mammalia, Insectivora), as inferred from two hybrid zones. Cytogenet. Genome Res. 96 (2002) 85-96
9. Brünner H., and Neet C. A parapatric scenery-the distribution and ecology of Sorex araneus and S. coronatus (Insectivora, Soricidae) in Southwestern Germany. Z. Säugetierkund. 56 (1991) 1-9
10. Buckley T.R., Cordeiro M., Marshall D.C., and Simon C. Differentiating between hypotheses of lineage sorting and introgression in New Zealand alpine cicadas (Maoricicada dugdale). Syst. Biol. 55 (2006) 411-425
11. Cantoni D. Social and spatial-organization of free-ranging shrews, Sorex coronatus and Neomys fodiens (Insectivora, Mammalia). Anim. Behav. 45 (1993) 975-995
12. Cathey J.C., Bickham J.W., and Patton J.C. Introgressive hybridization and nonconcordant evolutionary history of maternal and paternal lineages in North American deer. Evolution 52 (1998) 1224-1229
13. Catzeflis F., Graf J.D., Hausser J., and Vogel P. Biochemical-comparison in shrews of the genus Sorex from Western-Europe (Soricidae, Mammalia). Z. Zool. Syst. Evol. 20 (1982) 223-233
14. Churchfield S., Hollier J., and Brown K. Population dynamics and survivorship in the common shrew Sorex araneus in southern England. Acta Theriol. 40 (1995) 53-68
15. Croin-Michielsen N. Intraspecific and interspecific composition in th shrews Sorex araneus L. and S. minutus L. Arch. Neerlandaises Zool. 17 (1966) 73-174
16. Dannelid E. The karyotype of Sorex samniticus and its relation to that of S. araneus and 3 other species of Sorex (Mammalia, Soricidae). Folia Zool. 43 (1994) 71-88
17. Deffontaine V., Libois R., Kotlik P., Sommer R., Nieberding C., Paradis E., Searle J.B., and Michaux J. Beyond the Mediterranean peninsulas: evidence of central European glacial refugia for a temperate forest mammal species, the bank vole (Clethrionomys glareolus). Mol. Ecol. 14 (2005) 1727-1739
18. Edwards S.V. Relevance of microevolutionary processes to higher level molecular systematics. In: Mindell D.P. (Ed). Avian Molecular Evolution and Systematics (1997), Academic Press, New York 251-278
19. Edwards S., and Beerli P. Perspective: gene divergence, population divergence, and the variance in coalescence time in phylogeographic studies. Evolution 54 (2000) 1839-1854
20. Felsenstein J. Evolutionary trees from DNA-sequences-a maximum likelihood approach. J. Mol. Evol. 17 (1981) 368-376
21. Ferris S.D., Sage R.D., Huang C.M., Nielsen J.T., Ritte U., and Wilson A.C. Flow of mitochondrial-DNA across a species boundary. Proc. Natl. Acad. Sci. USA 80 (1983) 2290-2294
22. Fumagalli L., Hausser J., Taberlet P., Gielly L., and Stewart D.T. Phylogenetic structures of the Holarctic Sorex araneus group and its relationships with S. samniticus, as inferred from mtDNA sequences. Hereditas 125 (1996) 191-199
23. Fumagalli L., Taberlet P., Stewart D.T., Gielly L., Hausser J., and Vogel P. Molecular phylogeny and evolution of Sorex shrews (Soricidae: Insectivora) inferred from mitochondrial DNA sequence data. Mol. Phylogenet. Evol. 11 (1999) 222-235
24. Goldman N., Anderson J., and Rodrigo A. Likelihood-based tests of topologies in phylogenetics. Syst. Biol. 49 (2000) 652-670
25. Guindon S., and Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52 (2003) 692-704
26. Hammer M.F., Blackmer F., Garrigan D., Nachman M.W., and Wilder J.A. Human population structure and its effects on sampling Y chromosome sequence variation. Genetics 164 (2003) 1495-1509
27. Hasegawa M., Kishino H., and Yano T. Dating the human-ape split by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22 (1985) 160-174
28. Hausser J. Distribution in Switzerland and France ofSorex araneus L 1758 and of Sorex coronatus Millet, 1828 (Mammalia, Insectivora). Mammalia 42 (1978) 329-341
29. Hausser J., Bosshard F., Taberlet P., and Wójcik J. Relationships between chromosome races and species of Sorex of thearaneus group in the Western Alps. Mém. Soc. Vaud. Sc. Nat. 19 (1991) 79-95
30. Hausser J., Fedyk S., Fredga K., Searle J.B., Volobouev V., Wójcik J., and Zima J. Definition and nomenclature of the chromosome races of Sorex araneus. Folia Zool. 43 (1994) 1-9
31. Hausser J., and Jammot D. Etude Biometrique des machoires chez les Sorex du groupe araneus en Europe continentale (Mammalia, Insectivora). Mammalia 38 (1974) 324-343
32. Hellborg L., and Ellegren H. Y chromosome conserved anchored tagged sequences (YCATS) for the analysis of mammalian male-specific DNA. Mol. Ecol. 12 (2003) 283-291
33. Hellborg L., Gunduz I., and Jaarola M. Analysis of sex-linked sequences supports a new mammal species in Europe. Mol. Ecol. 14 (2005) 2025-2031
34. Hewitt G.M. Some genetic consequences of ice ages, and their role in divergence and speciation. Biol. J. Linn. Soc. Lond. 58 (1996) 247-276
35. Hewitt G.M. Post-glacial re-colonization of European biota. Biol. J. Linn. Soc. Lond. 68 (1999) 87-112
36. Huelsenbeck J.P., and Ronquist F. MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17 (2001) 754-755
37. Irwin D.M., Kocher T.D., and Wilson A.C. Evolution of the cytochrome-b gene of mammals. J. Mol. Evol. 32 (1991) 128-144
38. Jaarola M., and Searle J.B. Phylogeography of field voles (Microtus agrestis) in Eurasia inferred from mitochondrial DNA sequences. Mol. Ecol. 11 (2002) 2613-2621
39. Kocher T.D., Thomas W.K., Meyer A., Edwards S.V., Paabo S., Villablanca F.X., and Wilson A.C. Dynamics of mitochondrial-DNA evolution in animals amplification and sequencing with conserved primers. Proc. Natl. Acad. Sci. USA 86 (1989) 6196-6200
40. Kotlik P., Deffontaine V., Mascheretti S., Zima J., Michaux J.R., and Searle J.B. A northern glacial refugium for bank voles (Clethrionomys glareolus). Proc. Natl. Acad. Sci. USA 103 (2006) 14860-14864
41. López-Fuster M.J., Ventura J., Garcia-Perea R., and Gisbert J. The Sorex araneus group in the northern Iberian System (Spain): a contact zone betweenS. coronatus and S. granarius?. Acta Theriol. 44 (1999) 113-122
42. Lugon-Moulin N., Brünner H., Wyttenbach A., Hausser J., and Goudet J. Hierarchical analyses of genetic differentiation in a hybrid zone of Sorex araneus (Insectivora: Soricidae). Mol. Ecol. 8 (1999) 419-431
43. Maddison D. The discovery and importance of multiple islands of most-parsimonious trees. Syst. Biol. 40 (1991) 315-328
44. Matsubara K., Ishibashi Y., Ohdach I.S., and Matsuda Y. A new primer set for sex identification in the genus Sorex (Soricidae, Insectivora). Mol. Ecol. Notes 1 (2001) 241-242
45. Melo-Ferreira J., Boursot P., Suchentrunk F., Ferrand N., and Alves P.C. Invasion from the cold past: extensive introgression of mountain hare (Lepus timidus) mitochondrial DNA into three other hare species in northern Iberia. Mol. Ecol. 14 (2005) 2459-2464
46. Michaux J.R., Libois R., and Filippucci M.G. So close and so different: comparative phylogeography of two small mammal species, the Yellow-necked fieldmouse (Apodemus flavicollis) and the Woodmouse (Apodemus sylvaticus) in the Western Palearctic region. Heredity 94 (2005) 52-63
47. Neet C.R., and Hausser J. Habitat selection in zones of parapatric contact between the Common Shrew Sorex araneus and Millets Shrew Sorex coronatus. J. Anim. Ecol. 59 (1990) 235-250
48. Nichols R. Gene trees and species trees are not the same. Trends Ecol. Evol. 16 (2001) 358-364
49. Ogg J. Status of divisions of the International Geologic time scale. Lethia 37 (2004) 183-199
50. Petit E., Balloux F., and Excoffier L. Mammalian population genetics: why not Y?. Trends Ecol. Evol. 17 (2002) 28-33
51. Pfunder M., Holzgang O., and Frey J.E. Development of microarray-based diagnostics of voles and shrews for use in biodiversity monitoring studies, and evaluation of mitochondrial cytochrome oxidase I vs. cytochrome b as genetic markers. Mol. Ecol. 13 (2004) 1277-1286
52. Polly P.D. On morphological clocks and paleophylogeography: towards a timescale for Sorex hybrid zones. Genetica (2001) 339-357
53. Posada D., and Crandall K.A. MODELTEST: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
54. Ratkiewicz M., Fedyk S., Banaszek A., Gielly L., Chetnicki W., Jadwiszczak K., and Taberlet P. The evolutionary history of the two karyotypic groups of the Common Shrew, Sorex araneus, in Poland. Heredity 88 (2002) 235-242
55. Ronquist F., and Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
56. Rosenberg N.A. The probability of topological concordance of gene trees and species trees. Theor. Popul. Biol. 61 (2002) 225-247
57. Rozas J., Sanchez-DelBarrio J.C., Messeguer X., and Rozas R. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19 (2003) 2496-2497
58. Ruedi, M., 1998. Protein evolution in shrews. In: Wójcik, J., Wolsan, M. (Eds.), Evolution of Shrews Mammal Research Institute, Polish Academy of Sciences, Bialowieza, pp. 269-289.
59. Ruedi M., Smith M.F., and Patton J.L. Phylogenetic evidence of mitochondrial DNA introgression among pocket gophers in New Mexico (family Geomyidae). Mol. Ecol. 6 (1997) 453-462
60. Searle, J., Wójcik, J., 1998. Chromosomal evolution: the case of Sorex araneus. In: Wójcik, J., Wolsan, M. (Eds.), Evolution of Shrews Mammal Research Institute, Polish Academy of Sciences, Bialowieza, pp. 219-268.
61. Searle J.B. Three new karyotypic races of the common shrew Sorex araneus (Mammalia: Insectivora) and a phylogeny. Syst. Zool. 33 (1984) 184-194
62. Searle J.B., Fedyk S., Fredga K., Hausser J., and Volobouev V.T. Nomenclature for the chromosomes of the common shrew (Sorex araneus). Mém. Soc. Vaud. Sc. Nat. 19 (1991) 13-22
63. Sharman G.B. Chromosomes of the common shrew. Nature 177 (1956) 941-942
64. Shimodaira H., and Hasegawa M. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol. Biol. Evol. 16 (1999) 1114-1116
65. Steele C.A., and Storfer A. Phylogeographic incongruence of codistributed amphibian species based on small divrences in geographic distribution. Mol. Phylogenet. Evol. 43 (2007) 468-479
66. Stewart J.R., and Lister A. Cryptic northern refugia and the origins of the modern biota. Trends Ecol. Evol. 16 (2001) 608-613
67. Swofford, D.L., 1998. PAUP*: Phylogenetic Analysis Using Parsimony (*and other Methods). Version 4.0b1. Sinauer Associates, Sunderland, Massachusetts.
68. Taberlet P., Fumagalli L., and Hausser J. Chromosomal versus mitochondrial-DNA evolution-tracking the evolutionary history of the Southwestern European populations of the Sorex araneus group (Mammalia, Insectivora). Evolution 48 (1994) 623-636
69. Taberlet P., Fumagalli L., Wust-Saucy A.-G., and Cosson J.-F. Comparative phylogeography and postglacial colonization routes in Europe. Mol. Ecol. 7 (1998) 453-464
70. Tamura K., and Nei M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial-DNA in humans and chimpanzees. Mol. Biol. Evol. 10 (1993) 512-526
71. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25 (1997) 4876-4882
72. Tosi A.J., Morales J.C., and Melnick D.J. Paternal, maternal, and biparental molecular markers provide unique windows onto the evolutionary history of macaque monkeys. Evolution 57 (2003) 1419-1435
73. Verkaar E.L.C., Nijman I.J., Beeke M., Hanekamp E., and Lenstra J.A. Maternal and paternal lineages in cross-breeding bovine species has wisent a hybrid origin?. Mol. Biol. Evol. 21 (2004) 1165-1170
74. Volobouev V., and Catzeflis F. Mechanisms of chromosomal evolution in 3 European species of the Sorex araneus-arcticus group (Insectivora, Soricidae). Z. Zool. Syst. Evol. 27 (1989) 252-262
75. Volobouev V.T., and Dutrillaux B. Chromosomal evolution and phylogenetic relationships of the Sorex araneus-arcticus species group. Mém. Soc. Vaud. Sc. Nat. 19 (1991) 131-139
76. Wójcik J., Ratkiewicz M., and Searle J.B. Evolution of the common shrew Sorex araneus: chromosomal and molecular aspects. Acta Theriol. 47 (2002) 139-167
77. Wójcik J., and Searle J.B. The chromosome complement of Sorex granarius-the ancestral karyotype of the Common Shrew (Sorex araneus). Heredity 61 (1988) 225-229