Towards a modeling infrastructure for studying plant cells

Plant Physiology

Volumn 132, Issue 2, 2003, Pages 410-414

  Girke, Thomas ^a   Ozkan, Mihri ^a,b   Carter, David ^a   Raikhel, Natasha V ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b University of California Riverside   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0038797807     PISSN: 00320889     EISSN: None     Source Type: Journal    
DOI: 10.1104/pp.103.022103     Document Type: Editorial

References (26)

1. Blanchette M, Tompa M (2002) Discovery of regulatory elements by a computational method for phylogenetic footprinting. Genome Res 12: 739-748
2. Brakenhoff GJ, Visscher K (1992) Confocal imaging with bilateral scanning and array detectors. J Microsc 165: 139-146
3. Carter D (1994) What do you get when you cross a confocal microscope with a microtome? Instant 3D reconstruction of really thick or opaque specimens. Microsc Soc Can Bull 22: 9-12
4. Chamberlain C, Hahn KM (2000) Watching proteins in the wild: fluorescence methods to study protein dynamics in living cells. Traffic 1: 755-762
5. Garcia-Hernandez M, Berardini TZ, Chen G, Crist D, Doyle A, Huala E, Knee E, Lambrecht M, Miller N, Mueller LA et al. (2002) TAIR: a resource for integrated Arabidopsis data. Funct Integr Genomics 2: 239-253
6. Hartwell LH, Hopfield JJ, Leibler S, Murray AW (1999) From molecular to modular cell biology. Nature 402: C47-C52
7. Hood L (1998) Systems biology: new opportunities arising from genomics, proteomics and beyond. Exp Hematol 26: 681
8. Houtsmuller AB, Vermeulen W (2001) Macromolecular dynamics in living cell nuclei revealed by fluorescence redistribution after photobleaching. Histochem Cell Biol 115: 13-21
9. Hucka M, Finney A, Sauro HM, Bolouri H, Doyle J, Kitano H (2002) The ERATO Systems Biology Workbench: enabling interaction and exchange between software tools for computational biology. Pac Symp Biocomput 450-461
10. Ideker T, Ozier O, Schwikowski B, Siegel AF (2002) Discovering regulatory and signalling circuits in molecular interaction networks. Bioinformatics Suppl 18: S233-S240
11. Kitano H (2002a) Looking beyond the details: a rise in system-oriented approaches in genetics and molecular biology. Curr Genet 41: 1-10
12. Kitano H (2002b) Systems biology: a brief overview. Science 295: 1662-1664
13. Lewis A, Radko A, Ben Ami N, Palanker D, Lieberman K (1999) Near-field scanning optical microscopy in cell biology. Trends Cell Biol 9: 70-73
14. Noble D (2002) Modeling the heart-from genes to cells to the whole organ. Science 295: 1678-1682
15. Numann R, Negulescu PA (2001) High-throughput screening strategies for cardiac ion channels. Trends Cardiovasc Med 11: 54-59
16. Ozkan M, Ozkan CS, Kibar O, Wang MM, Bhatia S, Esener SC (2001) Heterogeneous integration through electrokinetic migration. IEEE Eng Med Biol Mag 20: 144-151
17. Peleg G, Lewis A, Linial M, Loew LM (1999) Nonlinear optical measurement of membrane potential around single molecules at selected cellular sites. Proc Natl Acad Sci USA 96: 6700-6704
18. Rudy Y (2000) From genome to physiome: integrative models of cardiac excitation. Ann Biomed Eng 28: 945-950
19. Schoof H, Zaccaria P, Gundlach H, Lemcke K, Rudd S, Kolesov G, Arnold R, Mewes HW, Mayer KF (2002) MIPS Arabidopsis thaliana Database (MAtDB): an integrated biological knowledge resource based on the first complete plant genome. Nucleic Acids Res 30: 91-93
20. Schuck P (1997) Use of surface plasmon resonance to probe the equilibrium and dynamic aspects of interactions between biological macromolecules. Annu Rev Biophys Biomol Struct 26: 541-566
21. Somerville C, Somerville S (1999) Plant functional genomics. Science 285: 380-383
22. Stein L (2002) Creating a bioinformatics nation. Nature 417: 119-120
23. Stelling J, Kremling A, Ginkel M, Bettenbrock K, Gilles ED (2001) Towards a virtual biological laboratory. In H Kitano, ed, Foundations of Systems Biology. The MIT Press, Cambridge, MA, pp 189-212
24. van den Berg C, Willemsen V, Hage W, Weisbeek P, Scheres B (1995) Cell fate in the Arabidopsis root meristem determined by directional signalling. Nature 378: 62-65
25. van Wijk KJ (2001) Challenges and prospects of plant proteomics. Plant Physiol 126: 501-508
26. Wolfram S (2002) A New Kind of Science. Wolfram Media, Inc., Champaign, IL