DNA microchips for phytoplankton: The fluorescent wave of the future

Nova Hedwigia

Volumn 79, Issue 1-2, 2004, Pages 321-327

  Metfies, Katja ^a   Medlin, Linda K ^a  

^a ALFRED WEGENER INSTITUTE FOR POLAR AND MARINE RESEARCH   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ALGAE; BOLIDOPHYCEAE; CHLOROPHYTA; HAPTOPHYCEAE;

EID: 19944382034     PISSN: 00295035     EISSN: None     Source Type: Journal    
DOI: 10.1127/0029-5035/2004/0079-0321     Document Type: Article

References (19)

1. ALTSCHUL, S.F., W. GISH, W. MILLER, E.W. MYERS & D.J. LIPMAN (1990): Basic local alignment search tool. - J. Molec. Biol. 215: 403-410.
2. AMANN, R.I., B.J. BINDER, R.J. OLSON, S.W. CHISHOLM, R. DEVEREUX & D.A. STAHL (1990): Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. - Appl. Environm. Microbiol. 56: 1919-1925.
3. DeLONG, E.F., G.S. WICKHAM & N.R. PACE (1989): Phylogenetic stains: ribosomal RNA-based probes for the identification of single cells. - Science 243: 1360-1363.
4. DeRISI, J.L., V.R. IYER & P.O. BROWN (1997): Exploring the metabolic and genetic control of gene expression on a genomic scale. - Science 278: 680-686.
5. DÍEZ, B., C. PEDRÓS-ALIÓ & R. MASSANA (2001): Study of genetic diversity of eukaryotic picoplankton in different oceanic regions by small-subunit rRNA gene cloning and sequencing. -Appl. Environm. Microbiol. 67: 2932-2941.
6. FUCHS, B.M., F.O. GLÖCKNER, J. WULF & R. AMANN (2000): Unlabeled helper oligonucleotides increase the in situ accessibility to 16S rRNA of fluorescently labeled oligonucleotides probes. - Appl. Environm. Microbiol. 66: 3603-3607.
7. GIOVANNONI, S. J., T.B. BRITSCHGI, C.L. MOYER & K.G. FIELD (1990): Genetic diversity in Sargasso Sea bacterioplankton. - Nature 345: 60-63.
8. GUILLOU, L., M.J. CHRÉTIENNOT-DINET, L.K. MEDLIN, H. CLAUSTRE, S. LOISEAUXDE GOËR & D. VAULOT (1999): Bolidomonas: a new genus with two species belonging to a new algal class, the Bolidophyceae (Heterokonta). - J. Phycol. 35: 368-381.
9. GUSCHIN, D.Y., B.K. MOBARRY, D. PROUDNIKOV, D.A. STAHL, B.E. RITTMANN & A. D. MIRZABEKOV (1997): Oligonucleotide microchips as genosensors for determinative and environmental studies in microbiology. - Appl. Environm. Microbiol. 63: 2397-2402.
10. LANGE, M., L. GUILLOU, D. VAULOT, N. SIMON, R.I. AMANN, W. LUDWIG & L.K. MEDLIN (1996): Identification of the class Prymnesiophyceae and the genus Phaeocystis with ribosomal RNA-target nucleic acid probes detected by flow cytometry. - J. Phycol. 32: 858-868.
11. LIM, E.L., L.A. AMARAL, D.A. CARON & E.F. DELONG (1993): Application of rRNA-based probes for observing marine nanoplanktonic protists. - Appl. Environm. Microbiol. 59: 1647-1655.
12. LIM, E.L., M.R. DENNETT & D.A. CARON (1999): The ecology of Paraphysomonas imperforata based on studies employing oligonucleotide probe identification on coastal water samples and enrichment cultures. - Limnol. Oceanogr. 44: 37-51.
13. LÓPEZ-GARCIA, P., F. RODRIGUEZ-VALERA, C. PEDROS-ALIO & D. MOREIRA (2001): Unexpected diversity of small eukaryotes in deep-sea Antarctic plankton. - Nature 409: 603-607.
14. LOCKHART, D.J., H.L. DONG, M.C. BYRNE, M.T. FOLLETTIE, M.V. GALLO, M.S. CHEE, M. MITTMANN, C.W. WANG, M. KOBAYASHI, H. HORTON & E.L. BROWN (1996): Expression monitoring by hybridization to high-density oligonucleotide arrays. - Nature Biotechnol. 14: 1675-1680.
15. MAIDAK, B.L., J.R. COLE, T.G. LILBURN, C.T. PARKER, P.R. SAXMAN, R.J. FARRIS, G.M. GARRITY, G.J. OLSON, T.M. SCHMIDT & J.M. TIEDJE (2001): The RDP-II (Ribosomal Database Project). - Nucleic Acids Res. 29: 173-174.
16. MEDLIN, L., H.J. ELWOOD, S. STICKEL & M.L. SOGIN (1988): The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions. - Gene 71: 491-499.
17. MILLER, P.E. & C.A. SCHOLIN (1998): Identification and enumeration of cultured and wild Pseudo-nitzschia (Bacillariophyceae) using species-specific LSU rRNA-targeted fluorescent probes and filter based whole cell hybridization. - J. Phycol. 34: 371-382.
18. MOON-VAN DER STAAY, S.Y., R. DE WACHTER & D. VAULOT (2001): Oceanic 18S rDNA sequences from picoplankton reveal unsuspected eukaryotic diversity. - Nature 409: 607-610.
19. SIMON, N., L. CAMPBELL, E. ORNOLFSDOTTIR, R. GROBEN, L. GUILLOU, M. LANGE & L.K. MEDLIN (2000): Oligonucleotide probes for the identification of three algal groups by dot blot and fluorescent whole-cell hybridization. - J. Eukaryot. Microbiol. 47: 76-84.