메뉴 건너뛰기




Volumn 13, Issue 1, 2006, Pages 3-14

Complexity of the genomic diversity in enterohemorrhagic Escherichia coli O157 revealed by the combinational use of the O157 Sakai OligoDNA microarray and the whole genome PCR scanning

Author keywords

E. coli O157; Genomic diversity; Microarray; Whole genome PCR scanning

Indexed keywords

ARTICLE; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIAL VIRULENCE; DNA MICROARRAY; ENTEROHEMORRHAGIC ESCHERICHIA COLI; GENETIC VARIABILITY; NONHUMAN; POLYMERASE CHAIN REACTION; PROPHAGE; STRAIN DIFFERENCE;

EID: 33744922108     PISSN: 13402838     EISSN: 13402838     Source Type: Journal    
DOI: 10.1093/dnares/dsi026     Document Type: Article
Times cited : (45)

References (28)
  • 1
    • 2442664712 scopus 로고    scopus 로고
    • Evolution of pathogenic Escherichia coli
    • Donnenberg, M. S. (ed.). Academic Press, San Diego, Calif
    • Johnson, J. R. 2002, Evolution of pathogenic Escherichia coli, In: Donnenberg, M. S. (ed.). Escherichia coli: Virulence Mechanisms of a Versatile Pathogen. Academic Press, San Diego, Calif, pp. 55-77.
    • (2002) Escherichia Coli: Virulence Mechanisms of a Versatile Pathogen , pp. 55-77
    • Johnson, J.R.1
  • 3
    • 0032505655 scopus 로고    scopus 로고
    • Escherichia coli O157:H7
    • Mead, P. S. and Griffin, P. M. 1998, Escherichia coli O157:H7, Lancet, 352, 1207-1212.
    • (1998) Lancet , vol.352 , pp. 1207-1212
    • Mead, P.S.1    Griffin, P.M.2
  • 4
    • 15444350252 scopus 로고    scopus 로고
    • The complete genome sequence of Escherichia coli K-12
    • Blattner, F. R., Plunkett, G. 3rd, Bloch, C. A., et al. 1997, The complete genome sequence of Escherichia coli K-12, Science, 277, 1453-1474.
    • (1997) Science , vol.277 , pp. 1453-1474
    • Blattner, F.R.1    Plunkett III, G.2    Bloch, C.A.3
  • 5
    • 0035961748 scopus 로고    scopus 로고
    • Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12
    • Hayashi, T., Makino, K., Ohnishi, M., et al. 2001, Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12, DNA Res., 8, 11-22.
    • (2001) DNA Res. , vol.8 , pp. 11-22
    • Hayashi, T.1    Makino, K.2    Ohnishi, M.3
  • 6
    • 0035477452 scopus 로고    scopus 로고
    • Diversification of Escherichia coli genomes: Are bacteriophages the major contributors?
    • Ohnishi, M., Kurokawa, K., and Hayashi, T. 2001, Diversification of Escherichia coli genomes: are bacteriophages the major contributors? Trends Microbiol., 9, 481-485.
    • (2001) Trends Microbiol. , vol.9 , pp. 481-485
    • Ohnishi, M.1    Kurokawa, K.2    Hayashi, T.3
  • 7
    • 0035945586 scopus 로고    scopus 로고
    • Genome sequence of enterohaemorrhagic Escherichia coli O157:H7
    • Perna, N.T., Plunkett, G. 3rd, Burland, V., et al. 2001, Genome sequence of enterohaemorrhagic Escherichia coli O157:H7, Nature, 409, 529-533.
    • (2001) Nature , vol.409 , pp. 529-533
    • Perna, N.T.1    Plunkett III, G.2    Burland, V.3
  • 8
    • 0037168552 scopus 로고    scopus 로고
    • Genomic diversity of enterohemorrhagic Escherichia coli O157 revealed by whole genome PCR scanning
    • Ohnishi, M., Terajima, J., Kurokawa, K., et al. 2002, Genomic diversity of enterohemorrhagic Escherichia coli O157 revealed by whole genome PCR scanning, Proc. Natl Acad. Sci. USA, 99, 17043-17048.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 17043-17048
    • Ohnishi, M.1    Terajima, J.2    Kurokawa, K.3
  • 9
    • 0037195198 scopus 로고    scopus 로고
    • Improved analytical methods for microarray-based genome-composition analysis
    • RESEARCH0065
    • Kim, C. C., Joyce, E. A., Chan, K., and Falkow, S. 2002, Improved analytical methods for microarray-based genome-composition analysis, Genome Biol., 3, RESEARCH0065.
    • (2002) Genome Biol. , vol.3
    • Kim, C.C.1    Joyce, E.A.2    Chan, K.3    Falkow, S.4
  • 11
    • 0032574019 scopus 로고    scopus 로고
    • Complete nucleotide sequences of 93-kb and 3.3-kb plasmids of an enterohemorrhagic Escherichia coli O157:H7 derived from Sakai outbreak
    • Makino, K., Ishii, K., Yasunaga, T., et al. 1998, Complete nucleotide sequences of 93-kb and 3.3-kb plasmids of an enterohemorrhagic Escherichia coli O157:H7 derived from Sakai outbreak, DNA Res., 5, 1-9.
    • (1998) DNA Res. , vol.5 , pp. 1-9
    • Makino, K.1    Ishii, K.2    Yasunaga, T.3
  • 12
    • 0028233078 scopus 로고
    • Homologous pairing proteins encoded by the Escherichia coli recE and recT genes
    • Kolodner, R., Hall, S. D., and Luisi-DeLuca, C. 1994, Homologous pairing proteins encoded by the Escherichia coli recE and recT genes, Mol. Microbiol., 11, 23-30.
    • (1994) Mol. Microbiol. , vol.11 , pp. 23-30
    • Kolodner, R.1    Hall, S.D.2    Luisi-DeLuca, C.3
  • 13
    • 0026587935 scopus 로고
    • Cloning, expression, and DNA sequence analysis of genes encoding non-typeable Haemophilus influenzae high-molecular-weight surface-exposed proteins related to filamentous hemagglutinin of Bordetella pertussis
    • Barenkamp, S. J. and Leininger, E. 1992, Cloning, expression, and DNA sequence analysis of genes encoding non-typeable Haemophilus influenzae high-molecular-weight surface-exposed proteins related to filamentous hemagglutinin of Bordetella pertussis, Infect. Immun., 60, 1302-1313.
    • (1992) Infect. Immun. , vol.60 , pp. 1302-1313
    • Barenkamp, S.J.1    Leininger, E.2
  • 14
    • 0026501169 scopus 로고
    • Role of TraT protein, an anticomplementary protein produced in Escherichia coli by R100 factor, in serum resistance
    • Pramoonjago, P., Kaneko, M., Kinoshita, T., et al. 1992, Role of TraT protein, an anticomplementary protein produced in Escherichia coli by R100 factor, in serum resistance, J. Immunol., 148, 827-836.
    • (1992) J. Immunol. , vol.148 , pp. 827-836
    • Pramoonjago, P.1    Kaneko, M.2    Kinoshita, T.3
  • 15
    • 0034629478 scopus 로고    scopus 로고
    • Complete genome sequence of Neisseria meningitidis serogroup B strain MC58
    • Tettelin, H., Saunders, N. J., Heidelberg, J., et al. 2000, Complete genome sequence of Neisseria meningitidis serogroup B strain MC58, Science, 287, 1809-1815.
    • (2000) Science , vol.287 , pp. 1809-1815
    • Tettelin, H.1    Saunders, N.J.2    Heidelberg, J.3
  • 16
    • 0033985395 scopus 로고    scopus 로고
    • Identification of a novel genetic locus that is required for in vitro adhesion of a clinical isolate of enterohaemorrhagic Escherichia coli to epithelial cells
    • Nicholls, L., Grant, T. H., and Robins-Browne, R. M. 2000, Identification of a novel genetic locus that is required for in vitro adhesion of a clinical isolate of enterohaemorrhagic Escherichia coli to epithelial cells, Mol. Microbiol., 35, 275-288.
    • (2000) Mol. Microbiol. , vol.35 , pp. 275-288
    • Nicholls, L.1    Grant, T.H.2    Robins-Browne, R.M.3
  • 17
    • 0034116072 scopus 로고    scopus 로고
    • A large toxin from pathogenic Escherichia coli strains that inhibits lymphocyte activation
    • Klapproth, J. M., Scaletsky, I. C., McNamara, B. P., et al. 2000, A large toxin from pathogenic Escherichia coli strains that inhibits lymphocyte activation, Infect Immun., 68, 2148-2155.
    • (2000) Infect. Immun. , vol.68 , pp. 2148-2155
    • Klapproth, J.M.1    Scaletsky, I.C.2    McNamara, B.P.3
  • 18
    • 4544226530 scopus 로고    scopus 로고
    • Mutation of toxB and a truncated version of the efa-1 gene in Escherichia coli O157:H7 influences the expression and secretion of locus of enterocyte effacement-encoded proteins but not intestinal colonization in calves or sheep
    • Stevens, M. P., Roe, A. J., Vlisidou, L, et al. 2004, Mutation of toxB and a truncated version of the efa-1 gene in Escherichia coli O157:H7 influences the expression and secretion of locus of enterocyte effacement-encoded proteins but not intestinal colonization in calves or sheep, Infect. Immun., 72, 5402-5411.
    • (2004) Infect. Immun. , vol.72 , pp. 5402-5411
    • Stevens, M.P.1    Roe, A.J.2    Vlisidou, L.3
  • 19
    • 4344696800 scopus 로고    scopus 로고
    • Positive effects of multiple pch genes on expression of the locus of enterocyte effacement genes and adherence of enterohaemorrhagic Escherichia coli O157: H7 to HEp-2 cells
    • Iyoda, S. and Watanabe, H. 2004, Positive effects of multiple pch genes on expression of the locus of enterocyte effacement genes and adherence of enterohaemorrhagic Escherichia coli O157: H7 to HEp-2 cells, Microbiology, 150, 2357-2571.
    • (2004) Microbiology , vol.150 , pp. 2357-2571
    • Iyoda, S.1    Watanabe, H.2
  • 20
    • 4344656777 scopus 로고    scopus 로고
    • EspFU is a translocated EHEC effector that interacts with Tir and N-WASP and promotes Nck-independent actin assembly
    • Campellone, K. G., Robbins, D., and Leong, J. M. 2004, EspFU is a translocated EHEC effector that interacts with Tir and N-WASP and promotes Nck-independent actin assembly, Dev. Cell, 7, 217-228.
    • (2004) Dev. Cell , vol.7 , pp. 217-228
    • Campellone, K.G.1    Robbins, D.2    Leong, J.M.3
  • 21
    • 19944430353 scopus 로고    scopus 로고
    • EspJ is a prophage-carried type III effector protein of attaching and effacing pathogens that modulates infection dynamics
    • Dahan, S., Wiles, S., La Ragione, R. M., et al. 2005, EspJ is a prophage-carried type III effector protein of attaching and effacing pathogens that modulates infection dynamics, Infect. Immun., 73, 679-686.
    • (2005) Infect. Immun. , vol.73 , pp. 679-686
    • Dahan, S.1    Wiles, S.2    La Ragione, R.M.3
  • 22
    • 12144289554 scopus 로고    scopus 로고
    • Dissecting virulence: Systematic and functional analyses of a pathogenicity island
    • Deng, W., Puente, J. L., Gruenheid, S., Li, Y., et al. 2004, Dissecting virulence: systematic and functional analyses of a pathogenicity island, Proc. Natl Acad. Sci. USA, 101, 3597-3602.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 3597-3602
    • Deng, W.1    Puente, J.L.2    Gruenheid, S.3    Li, Y.4
  • 23
    • 8744295941 scopus 로고    scopus 로고
    • TccP is an enterohaemorrhagic Escherichia coli O157:H7 type III effector protein that couples Tir to the actin-cytoskeleton
    • Garmendia, J., Phillips, A. D., Carlier, M. F., et al. 2004, TccP is an enterohaemorrhagic Escherichia coli O157:H7 type III effector protein that couples Tir to the actin-cytoskeleton, Cell Microbiol., 6, 1167-1183.
    • (2004) Cell Microbiol. , vol.6 , pp. 1167-1183
    • Garmendia, J.1    Phillips, A.D.2    Carlier, M.F.3
  • 24
    • 12144290330 scopus 로고    scopus 로고
    • Identification and characterization of NleA, a non-LEE-encoded type III translocated virulence factor of enterohaemorrhagic Escherichia coli O157:H7
    • Gruenheid, S., Sekirov, I., Thomas, N. A., et al. 2004, Identification and characterization of NleA, a non-LEE-encoded type III translocated virulence factor of enterohaemorrhagic Escherichia coli O157:H7, Mol. Microbiol., 51, 1233-1249.
    • (2004) Mol. Microbiol. , vol.51 , pp. 1233-1249
    • Gruenheid, S.1    Sekirov, I.2    Thomas, N.A.3
  • 25
    • 12144287210 scopus 로고    scopus 로고
    • Identification of a novel Citrobacter rodentium type III secreted protein, EspI, and roles of this and other secreted proteins in infection
    • Mundy, R., Petrovska, L., Smollett, K., et al. 2004, Identification of a novel Citrobacter rodentium type III secreted protein, EspI, and roles of this and other secreted proteins in infection, Infect. Immun., 72, 2288-2302.
    • (2004) Infect. Immun. , vol.72 , pp. 2288-2302
    • Mundy, R.1    Petrovska, L.2    Smollett, K.3
  • 26
    • 14244251962 scopus 로고    scopus 로고
    • Evolution of genomic content in the stepwise emergence of Escherichia coli O157:H7
    • Wick, L. M., Qi, W., Lacher, D. W., and Whittam, T. S. 2005, Evolution of genomic content in the stepwise emergence of Escherichia coli O157:H7, J. Bacteriol., 187, 1783-1791.
    • (2005) J. Bacteriol. , vol.187 , pp. 1783-1791
    • Wick, L.M.1    Qi, W.2    Lacher, D.W.3    Whittam, T.S.4
  • 27
    • 0031777043 scopus 로고    scopus 로고
    • Genotypic and phenotypic changes in the emergence of Escherichia coli O157:H7
    • Feng, P., Lampel, K. A., Karch, H., and Whittam, T. S. 1998, Genotypic and phenotypic changes in the emergence of Escherichia coli O157:H7, J. Infect. Dis., 177, 1750-1753.
    • (1998) J. Infect. Dis. , vol.177 , pp. 1750-1753
    • Feng, P.1    Lampel, K.A.2    Karch, H.3    Whittam, T.S.4
  • 28
    • 0037608958 scopus 로고    scopus 로고
    • Escherichia coli O157:H7 Shiga toxin-encoding bacteriophages: Integrations, excisions, truncations, and evolutionary implications
    • Shaikh, N. and Tarr, P. I. 2003, Escherichia coli O157:H7 Shiga toxin-encoding bacteriophages: integrations, excisions, truncations, and evolutionary implications, J. Bacteriol., 185, 3596-3605.
    • (2003) J. Bacteriol. , vol.185 , pp. 3596-3605
    • Shaikh, N.1    Tarr, P.I.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.