메뉴 건너뛰기




Volumn 25, Issue 2, 2008, Pages 310-318

Starvation induces genomic rearrangements and starvation-resilient phenotypes in yeast

Author keywords

Genome evolution; Genome rearrangements; Saccharomyces cerevisiae; Starvation

Indexed keywords

ADAPTIVE BEHAVIOR; ARTICLE; CONTROLLED STUDY; EUKARYOTE; GENE MUTATION; GENE REARRANGEMENT; GENOMICS; KARYOTYPE; NONHUMAN; PHENOTYPE; PHYLOGENY; POPULATION RESEARCH; STARVATION; SURVIVAL; YEAST;

EID: 38949119752     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msm256     Document Type: Article
Times cited : (37)

References (64)
  • 1
    • 0021783365 scopus 로고
    • Stimulation of recombination between homologous sequences on carcinogen-treated plasmid DNA and chromosomal DNA by induction of the SOS response in Escherichia coli K12
    • Abbott PJ. 1985. Stimulation of recombination between homologous sequences on carcinogen-treated plasmid DNA and chromosomal DNA by induction of the SOS response in Escherichia coli K12. Mol Gen Genet. 201:129-132.
    • (1985) Mol Gen Genet , vol.201 , pp. 129-132
    • Abbott, P.J.1
  • 2
    • 0026750185 scopus 로고
    • Adaptation and major chromosomal changes in populations of Saccharomyces cerevisiae
    • Adams J, Puskas-Rozsa S, Simlar J, Wilke CM. 1992. Adaptation and major chromosomal changes in populations of Saccharomyces cerevisiae. Curr Genet. 22:13-19.
    • (1992) Curr Genet , vol.22 , pp. 13-19
    • Adams, J.1    Puskas-Rozsa, S.2    Simlar, J.3    Wilke, C.M.4
  • 3
    • 33745623641 scopus 로고    scopus 로고
    • Allen C, Buttner S, Aragon AD, et al. (11 co-authors). 2006. Isolation of quiescent and nonquiescent cells from yeast stationary-phase cultures. J Cell Biol. 174:89-100.
    • Allen C, Buttner S, Aragon AD, et al. (11 co-authors). 2006. Isolation of quiescent and nonquiescent cells from yeast stationary-phase cultures. J Cell Biol. 174:89-100.
  • 4
    • 0017333825 scopus 로고
    • Tandem genetic duplications in phage and bacteria
    • Anderson RP, Roth JR. 1977. Tandem genetic duplications in phage and bacteria. Annu Rev Microbiol. 31:473-505.
    • (1977) Annu Rev Microbiol , vol.31 , pp. 473-505
    • Anderson, R.P.1    Roth, J.R.2
  • 6
    • 0030854106 scopus 로고    scopus 로고
    • Phylogenetic reconstruction of vertebrate Hox cluster duplications
    • Bailey WJ, Kim J, Wagner GP, Ruddle FH. 1997. Phylogenetic reconstruction of vertebrate Hox cluster duplications. Mol Biol Evol. 14:843-853.
    • (1997) Mol Biol Evol , vol.14 , pp. 843-853
    • Bailey, W.J.1    Kim, J.2    Wagner, G.P.3    Ruddle, F.H.4
  • 7
    • 0026766798 scopus 로고
    • Analysis of the chromosomal DNA polymorphism of wine strains of Saccharomyces cerevisiae
    • Bidenne C, Blondin B, Dequin S, Vezinhet F. 1992. Analysis of the chromosomal DNA polymorphism of wine strains of Saccharomyces cerevisiae. Curr Genet. 22:1-7.
    • (1992) Curr Genet , vol.22 , pp. 1-7
    • Bidenne, C.1    Blondin, B.2    Dequin, S.3    Vezinhet, F.4
  • 10
    • 0031904230 scopus 로고    scopus 로고
    • Multiple duplications of yeast hexose transport genes in response to selection in a glucose-limited environment
    • Brown CJ, Todd KM, Rosenzweig RF. 1998. Multiple duplications of yeast hexose transport genes in response to selection in a glucose-limited environment. Mol Biol Evol. 15:931-942.
    • (1998) Mol Biol Evol , vol.15 , pp. 931-942
    • Brown, C.J.1    Todd, K.M.2    Rosenzweig, R.F.3
  • 11
    • 0031894492 scopus 로고    scopus 로고
    • Mutation and cancer: The antecedents to our studies of adaptive mutation
    • Cairns J. 1998. Mutation and cancer: the antecedents to our studies of adaptive mutation. Genetics. 148:1433-1440.
    • (1998) Genetics , vol.148 , pp. 1433-1440
    • Cairns, J.1
  • 12
    • 0141520905 scopus 로고
    • An electrophoretic karyotype for yeast
    • Carle GF, Olson MV. 1985. An electrophoretic karyotype for yeast. Proc Natl Acad Sci U S A. 82:3756-3760.
    • (1985) Proc Natl Acad Sci U S A , vol.82 , pp. 3756-3760
    • Carle, G.F.1    Olson, M.V.2
  • 14
    • 0027298311 scopus 로고
    • Phosphate starvation and low temperature as well as ultraviolet irradiation transcriptionally induce the Escherichia coli LexA- controlled gene sfiA
    • Dri AM, Moreau PL. 1993. Phosphate starvation and low temperature as well as ultraviolet irradiation transcriptionally induce the Escherichia coli LexA- controlled gene sfiA. Mol Microbiol. 8:697-706.
    • (1993) Mol Microbiol , vol.8 , pp. 697-706
    • Dri, A.M.1    Moreau, P.L.2
  • 16
    • 33745736295 scopus 로고    scopus 로고
    • Yeasts illustrate the molecular mechanisms of eukaryotic genome evolution
    • Dujon B. 2006. Yeasts illustrate the molecular mechanisms of eukaryotic genome evolution. Trends Genet. 22:375-387.
    • (2006) Trends Genet , vol.22 , pp. 375-387
    • Dujon, B.1
  • 17
    • 3042720475 scopus 로고    scopus 로고
    • Dujon B, Sherman D, Fischer G, et al. (67 co-authors). 2004. Genome evolution in yeasts. Nature. 430:35-44.
    • Dujon B, Sherman D, Fischer G, et al. (67 co-authors). 2004. Genome evolution in yeasts. Nature. 430:35-44.
  • 19
    • 0019503184 scopus 로고
    • SOS functions, cancer and inducible mutation
    • Echols H. 1981. SOS functions, cancer and inducible mutation. Cell. 25:1-2.
    • (1981) Cell , vol.25 , pp. 1-2
    • Echols, H.1
  • 21
    • 0042027896 scopus 로고    scopus 로고
    • Structural dynamics of eukaryotic chromosome evolution
    • Eichler EE, Sankoff D. 2003. Structural dynamics of eukaryotic chromosome evolution. Science. 301:793-797.
    • (2003) Science , vol.301 , pp. 793-797
    • Eichler, E.E.1    Sankoff, D.2
  • 22
    • 0024614562 scopus 로고
    • Somaclonal variation-genetic basis and breeding applications
    • Evans DA. 1989. Somaclonal variation-genetic basis and breeding applications. Trends Genet. 5:46-50.
    • (1989) Trends Genet , vol.5 , pp. 46-50
    • Evans, D.A.1
  • 23
    • 38949135256 scopus 로고    scopus 로고
    • Felsenstein J. 1989. PHYLIP, Phylogeny Inference Package Version 3.2, Cladistics. 5:164-166
    • Felsenstein J. 1989. PHYLIP - Phylogeny Inference Package (Version 3.2). Cladistics. 5:164-166.
  • 24
    • 0033616769 scopus 로고    scopus 로고
    • Evolution of microbial diversity during prolonged starvation
    • Finkel SE, Kolter R. 1999. Evolution of microbial diversity during prolonged starvation. Proc Natl Acad Sci U S A. 96:4023-4027.
    • (1999) Proc Natl Acad Sci U S A , vol.96 , pp. 4023-4027
    • Finkel, S.E.1    Kolter, R.2
  • 26
    • 33645787782 scopus 로고    scopus 로고
    • Highly variable rates of genome rearrangements between hemiascomycetous yeast lineages
    • Fischer G, Rocha EP, Brunet F, Vergassola M, Dujon B. 2006. Highly variable rates of genome rearrangements between hemiascomycetous yeast lineages. PLoS Genet. 2:e32.
    • (2006) PLoS Genet , vol.2
    • Fischer, G.1    Rocha, E.P.2    Brunet, F.3    Vergassola, M.4    Dujon, B.5
  • 27
    • 0021801342 scopus 로고
    • Genes-in-pieces revisited
    • Gilbert W. 1985. Genes-in-pieces revisited. Science. 228:823-824.
    • (1985) Science , vol.228 , pp. 823-824
    • Gilbert, W.1
  • 28
    • 33747877763 scopus 로고    scopus 로고
    • Transpositions and translocations induced by site-specific double-strand breaks in budding yeast
    • Haber JE. 2006. Transpositions and translocations induced by site-specific double-strand breaks in budding yeast. DNA Repair (Amst). 5:998-1009.
    • (2006) DNA Repair (Amst) , vol.5 , pp. 998-1009
    • Haber, J.E.1
  • 29
    • 7344260214 scopus 로고    scopus 로고
    • Adaptive mutagenesis: A process that generates almost exclusively beneficial mutations
    • Hall BG. 1998. Adaptive mutagenesis: a process that generates almost exclusively beneficial mutations. Genetica. 102-103:109-125.
    • (1998) Genetica , vol.102-103 , pp. 109-125
    • Hall, B.G.1
  • 30
    • 38949176824 scopus 로고    scopus 로고
    • Morphogenetic variation via regulated mutation in yeast
    • Madison WI, University of Wisconsin
    • Halme A, Styles C, Fink G. 2002. Morphogenetic variation via regulated mutation in yeast. Yeast Genetics and Molecular Biology Meeting. Madison (WI): University of Wisconsin.
    • (2002) Yeast Genetics and Molecular Biology Meeting
    • Halme, A.1    Styles, C.2    Fink, G.3
  • 32
    • 14044252089 scopus 로고    scopus 로고
    • Adaptive amplification and point mutation are independent mechanisms: Evidence for various stress-inducible mutation mechanisms
    • Hastings PJ, Slack A, Petrosino JF, Rosenberg SM. 2004. Adaptive amplification and point mutation are independent mechanisms: evidence for various stress-inducible mutation mechanisms. PLoS Biol. 2:e399.
    • (2004) PLoS Biol , vol.2
    • Hastings, P.J.1    Slack, A.2    Petrosino, J.F.3    Rosenberg, S.M.4
  • 33
    • 0025154934 scopus 로고
    • Field inversion gel electrophoresis with different pulse time ramps
    • Heller C, Pohl FM. 1990. Field inversion gel electrophoresis with different pulse time ramps. Nucleic Acids Res. 18:6299-6304.
    • (1990) Nucleic Acids Res , vol.18 , pp. 6299-6304
    • Heller, C.1    Pohl, F.M.2
  • 36
    • 0001313535 scopus 로고
    • The distribution of the number of mutants in bacterial populations
    • Lea DE, Coulson CA. 1949. The distribution of the number of mutants in bacterial populations. J Genet. 49:264-285.
    • (1949) J Genet , vol.49 , pp. 264-285
    • Lea, D.E.1    Coulson, C.A.2
  • 37
    • 0029860724 scopus 로고    scopus 로고
    • High mutation frequencies among Escherichia coli and Salmonella pathogens [see comments]
    • LeClerc JE, Li B, Payne WL, Cebula TA. 1996. High mutation frequencies among Escherichia coli and Salmonella pathogens [see comments]. Science. 274:1208-1211.
    • (1996) Science , vol.274 , pp. 1208-1211
    • LeClerc, J.E.1    Li, B.2    Payne, W.L.3    Cebula, T.A.4
  • 38
    • 0028291689 scopus 로고
    • Genetic analysis of a plasmid-encoded, host genotype-specific enhancement of bacterial fitness
    • Lenski RE, Simpson SC, Nguyen TT. 1994. Genetic analysis of a plasmid-encoded, host genotype-specific enhancement of bacterial fitness. J Bacteriol. 176:3140-3147.
    • (1994) J Bacteriol , vol.176 , pp. 3140-3147
    • Lenski, R.E.1    Simpson, S.C.2    Nguyen, T.T.3
  • 39
    • 0037515830 scopus 로고    scopus 로고
    • Molecular analysis of mutS expression and mutation in natural isolates of pathogenic Escherichia coli
    • Li B, Tsui HC, LeClerc JE, Dey M, Winkler ME, Cebula TA. 2003. Molecular analysis of mutS expression and mutation in natural isolates of pathogenic Escherichia coli. Microbiology. 149:1323-1331.
    • (2003) Microbiology , vol.149 , pp. 1323-1331
    • Li, B.1    Tsui, H.C.2    LeClerc, J.E.3    Dey, M.4    Winkler, M.E.5    Cebula, T.A.6
  • 40
    • 0027395673 scopus 로고
    • Chromosomal rearrangements during vegetative growth of a wild strain of Saccharomyces cerevisiae
    • Longo E, Vezinhet F. 1993. Chromosomal rearrangements during vegetative growth of a wild strain of Saccharomyces cerevisiae. Appl Environ Microbiol. 59:322-326.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 322-326
    • Longo, E.1    Vezinhet, F.2
  • 41
    • 0021715393 scopus 로고
    • The significance of responses of the genome to challenge
    • McClintock B. 1984. The significance of responses of the genome to challenge. Science. 226:792.
    • (1984) Science , vol.226 , pp. 792
    • McClintock, B.1
  • 42
    • 0000775877 scopus 로고
    • The measurement of gene mutation in Drosophila, its high variability and its dependence upon temperature
    • Muller HJ. 1928. The measurement of gene mutation in Drosophila, its high variability and its dependence upon temperature. Genetics. 13:279-357.
    • (1928) Genetics , vol.13 , pp. 279-357
    • Muller, H.J.1
  • 43
    • 22744440499 scopus 로고    scopus 로고
    • Murphy WJ, Larkin DM, Everts-van der Wind A, et al. (25 coauthors). 2005. Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps. Science. 309:613-617.
    • Murphy WJ, Larkin DM, Everts-van der Wind A, et al. (25 coauthors). 2005. Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps. Science. 309:613-617.
  • 44
    • 0034669125 scopus 로고    scopus 로고
    • All three SOS-inducible DNA polymerases (Pol II, Pol IV and Pol V) are involved in induced mutagenesis
    • Napolitano R, Janel-Bintz R, Wagner J, Fuchs RP. 2000. All three SOS-inducible DNA polymerases (Pol II, Pol IV and Pol V) are involved in induced mutagenesis. EMBO J. 19:6259-6265.
    • (2000) EMBO J , vol.19 , pp. 6259-6265
    • Napolitano, R.1    Janel-Bintz, R.2    Wagner, J.3    Fuchs, R.P.4
  • 45
    • 0028059281 scopus 로고
    • Chromosomal speciation and adaptive radiation of mole rats in Asia Minor correlated with increased ecological stress
    • Nevo E, Filippucci MG, Redi C, Korol A, Beiles A. 1994. Chromosomal speciation and adaptive radiation of mole rats in Asia Minor correlated with increased ecological stress. Proc Natl Acad Sci U S A. 91:8160-8164.
    • (1994) Proc Natl Acad Sci U S A , vol.91 , pp. 8160-8164
    • Nevo, E.1    Filippucci, M.G.2    Redi, C.3    Korol, A.4    Beiles, A.5
  • 46
    • 0036274037 scopus 로고    scopus 로고
    • The mismatch repair system (mutS, mutL and uvrD genes) in Pseudomonas aeruginosa: Molecular characterization of naturally occurring mutants
    • Oliver A, Baquero F, Blazquez J. 2002. The mismatch repair system (mutS, mutL and uvrD genes) in Pseudomonas aeruginosa: molecular characterization of naturally occurring mutants. Mol Microbiol. 43:1641-1650.
    • (2002) Mol Microbiol , vol.43 , pp. 1641-1650
    • Oliver, A.1    Baquero, F.2    Blazquez, J.3
  • 47
    • 1842607847 scopus 로고    scopus 로고
    • R Foundation for Statistical, Vienna Austria
    • R Foundation for Statistical. R: a language and environment for statistical computing. Vienna (Austria): R Foundation for Statistical Computing (www.r-project.org.).
    • R: A language and environment for statistical computing
  • 48
    • 0033613335 scopus 로고    scopus 로고
    • Enzymes of evolutionary change [news]
    • Radman M. 1999. Enzymes of evolutionary change [news]. Nature. 401:866-869.
    • (1999) Nature , vol.401 , pp. 866-869
    • Radman, M.1
  • 50
    • 0034006621 scopus 로고    scopus 로고
    • Determining mutation rates in bacterial populations
    • Rosche WA, Foster PL. 2000. Determining mutation rates in bacterial populations. Methods. 20:4-17.
    • (2000) Methods , vol.20 , pp. 4-17
    • Rosche, W.A.1    Foster, P.L.2
  • 51
    • 33745209199 scopus 로고    scopus 로고
    • Analysis of gross-chromosomal rearrangements in Saccharomyces cerevisiae
    • Schmidt KH, Pennaneach V, Putnam CD, Kolodner RD. 2006. Analysis of gross-chromosomal rearrangements in Saccharomyces cerevisiae. Methods Enzymol. 409:462-476.
    • (2006) Methods Enzymol , vol.409 , pp. 462-476
    • Schmidt, K.H.1    Pennaneach, V.2    Putnam, C.D.3    Kolodner, R.D.4
  • 52
    • 0014986159 scopus 로고
    • Spontaneous chromosomal breakage and high incidence of leukemia in inherited disease
    • Schroeder TM, Kurth R. 1971. Spontaneous chromosomal breakage and high incidence of leukemia in inherited disease. Blood. 37:96-112.
    • (1971) Blood , vol.37 , pp. 96-112
    • Schroeder, T.M.1    Kurth, R.2
  • 53
    • 14344273992 scopus 로고    scopus 로고
    • Seoighe C, Federspiel N, Jones T, et al. (20 co-authors). 2000. Prevalence of small inversions in yeast gene order evolution. Proc Natl Acad Sci U S A. 97:14433-14437.
    • Seoighe C, Federspiel N, Jones T, et al. (20 co-authors). 2000. Prevalence of small inversions in yeast gene order evolution. Proc Natl Acad Sci U S A. 97:14433-14437.
  • 55
    • 0030620273 scopus 로고    scopus 로고
    • Evolution of high mutation rates in experimental populations of E. coli [see comments]
    • Sniegowski PD, Gerrish PJ, Lenski RE. 1997. Evolution of high mutation rates in experimental populations of E. coli [see comments]. Nature. 387:703-705.
    • (1997) Nature , vol.387 , pp. 703-705
    • Sniegowski, P.D.1    Gerrish, P.J.2    Lenski, R.E.3
  • 56
    • 34547638047 scopus 로고    scopus 로고
    • Identification of the transforming EML4-ALK fusion gene in non-small-cell lung cancer
    • Soda MEA. 2007. Identification of the transforming EML4-ALK fusion gene in non-small-cell lung cancer. Nature. 448:561-566.
    • (2007) Nature , vol.448 , pp. 561-566
    • Soda, M.E.A.1
  • 57
    • 0001119463 scopus 로고
    • Essays on evolution. I On the effects of selection on mutation rate
    • Sturtevant AH. 1937. Essays on evolution. I On the effects of selection on mutation rate. Q Rev Biol. 12:464-467.
    • (1937) Q Rev Biol , vol.12 , pp. 464-467
    • Sturtevant, A.H.1
  • 58
    • 0032979190 scopus 로고    scopus 로고
    • Mutators, population size, adaptive landscape and the adaptation of asexual populations of bacteria
    • Tenaillon O, Toupance B, Le Nagard H, Taddei F, Godelle B. 1999. Mutators, population size, adaptive landscape and the adaptation of asexual populations of bacteria. Genetics. 152:485-493.
    • (1999) Genetics , vol.152 , pp. 485-493
    • Tenaillon, O.1    Toupance, B.2    Le Nagard, H.3    Taddei, F.4    Godelle, B.5
  • 59
    • 27344451557 scopus 로고    scopus 로고
    • Tomlins SA, Rhodes DR, Perner S, et al. (16 co-authors). 2005. Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer. Science. 310:644-648.
    • Tomlins SA, Rhodes DR, Perner S, et al. (16 co-authors). 2005. Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer. Science. 310:644-648.
  • 60
    • 0033594973 scopus 로고    scopus 로고
    • Mutation, recombination, and incipient speciation of bacteria in the laboratory
    • Vulic M, Lenski RE, Radman M. 1999. Mutation, recombination, and incipient speciation of bacteria in the laboratory. Proc Natl Acad Sci U S A. 96:7348-7351.
    • (1999) Proc Natl Acad Sci U S A , vol.96 , pp. 7348-7351
    • Vulic, M.1    Lenski, R.E.2    Radman, M.3
  • 61
    • 0023150542 scopus 로고
    • Mutagenic DNA repair in Escherichia coli. XIII. Proofreading exonuclease of DNA polymerase III holoenzyme is not operational during UV mutagenesis
    • Woodgate R, Bridges BA, Herrera G, Blanco M. 1987. Mutagenic DNA repair in Escherichia coli. XIII. Proofreading exonuclease of DNA polymerase III holoenzyme is not operational during UV mutagenesis. Mutat Res. 183:31-37.
    • (1987) Mutat Res , vol.183 , pp. 31-37
    • Woodgate, R.1    Bridges, B.A.2    Herrera, G.3    Blanco, M.4
  • 62
    • 1642385754 scopus 로고    scopus 로고
    • Reciprocal translocations in Saccharomyces cerevisiae formed by nonhomologous end joining
    • Yu X, Gabriel A. 2004. Reciprocal translocations in Saccharomyces cerevisiae formed by nonhomologous end joining. Genetics. 166:741-751.
    • (2004) Genetics , vol.166 , pp. 741-751
    • Yu, X.1    Gabriel, A.2
  • 63
    • 0030631325 scopus 로고    scopus 로고
    • Environmental stress and evolution: A theoretical study
    • Zhivotovsky LA. 1997. Environmental stress and evolution: a theoretical study. EXS. 83:241-254.
    • (1997) EXS , vol.83 , pp. 241-254
    • Zhivotovsky, L.A.1
  • 64
    • 0037132902 scopus 로고    scopus 로고
    • Zhou W, Goodman SN, Galizia G, et al. (17 co-authors). 2002. Counting alleles to predict recurrence of early-stage colorectal cancers. Lancet. 359:219-225.
    • Zhou W, Goodman SN, Galizia G, et al. (17 co-authors). 2002. Counting alleles to predict recurrence of early-stage colorectal cancers. Lancet. 359:219-225.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.