Microarray data analysis toolbox (MDAT): For normalization, adjustment and analysis of gene expression data

Bioinformatics

Volumn 20, Issue 18, 2004, Pages 3687-3690

  Knowlton, Nicholas ^a   Dozmorov, Igor M ^a   Centola, Michael ^a  

^a OKLAHOMA MEDICAL RESEARCH FOUNDATION   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER ANALYSIS; COMPUTER PROGRAM; DATA ANALYSIS; DNA MICROARRAY; GENE EXPRESSION PROFILING; GENETIC ALGORITHM; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; STATISTICAL ANALYSIS;

EID: 12344315879     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bth424     Document Type: Article

References (9)

1. Dozmorov,I. and Centola,M. (2003a) An associative analysis of gene expression array data. Bioinformatics, 19, 204-211.
2. Dozmorov,I., Saban,M.R., Knowlton,N., Centola,M. and Saban,R. (2003b) Connective molecular pathways of experimental bladder inflammation. Physiol. Genomics, 15, 209-222.
3. Dozmorov,I., Knowlton,N., Tang,Y. and Centola,M. (2004) Statistical monitoring of weak spots for improvement of normalization and ratio estimates in microarrays. BMC Bioinformatics, 5, 53.
4. Eichler,G.S., Huang,S. and Ingber,D.E. (2003) Gene Expression Dynamics Inspector (GEDI): for integrative analysis of expression profiles. Bioinformatics, 19, 2321-2322.
5. Fan,J., Tam,P., Woude,G.V. and Ren,Y. (2004) Normalization and analysis of cDNA microarrays using within-array replications applied to neuroblastoma cell response to a cytokine. Proc. Natl Acad. Sci., USA, 101, 1135-1140.
6. Jarvis,J.N., Dozmorov,I., Jiang,K., Frank,M.B., Szodoray,P., Alex,P. and Centola,M. (2003) Novel approaches to gene expression analysis of active polyarticular juvenile rheumatoid arthritis. Arthritis Res. Ther., 6, R15-R31.
7. Jarvis,J.N., Dozmorov,I., Jiang,K., Chen,Y., Frank,M.B. and Centola,M. (2004) Gene expression arrays reveal a rapid return to normal homeostasis in immunologically-challenged trophoblast-like JAR cells. J. Reproduct. Immunol., 61, 99-113.
8. Rocke,D.M. and Durbin,B.A. (2001) A model for measurement error for gene expression analysis. J. Comput., Biol., 8, 557-569.
9. Venet,D. (2003) MatArray: a Matlab toolbox for microarray data. Bioinformatics, 19, 659-660.