-
1
-
-
32544439098
-
Aberrant termination triggers nonsense-mediated mRNA decay
-
Amrani N., Dong S., He F., Ganesan R., Ghosh S., Kervestin S., Li C., Mangus D.A., Spatrick P., and Jacobson A. Aberrant termination triggers nonsense-mediated mRNA decay. Biochem. Soc. Trans. 34 (2006) 39-42
-
(2006)
Biochem. Soc. Trans.
, vol.34
, pp. 39-42
-
-
Amrani, N.1
Dong, S.2
He, F.3
Ganesan, R.4
Ghosh, S.5
Kervestin, S.6
Li, C.7
Mangus, D.A.8
Spatrick, P.9
Jacobson, A.10
-
4
-
-
0025211411
-
Determinants of the interaction between the iron-responsive element-binding protein and its binding site in rat L-ferritin mRNA
-
Barton H.A., Eisenstein R.S., Bomford A., and Munro H.N. Determinants of the interaction between the iron-responsive element-binding protein and its binding site in rat L-ferritin mRNA. J. Biol. Chem. 265 (1990) 7000-7008
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 7000-7008
-
-
Barton, H.A.1
Eisenstein, R.S.2
Bomford, A.3
Munro, H.N.4
-
5
-
-
0033519623
-
Localization and anchoring of mRNA in budding yeast
-
Beach D.L., Salmon E.D., and Bloom K. Localization and anchoring of mRNA in budding yeast. Curr. Biol. 9 (1999) 569-578
-
(1999)
Curr. Biol.
, vol.9
, pp. 569-578
-
-
Beach, D.L.1
Salmon, E.D.2
Bloom, K.3
-
6
-
-
33746055678
-
mRNA degradation by miRNAs and GW182 requires both CCR4:NOT deadenylase and DCP1:DCP2 decapping complexes
-
Behm-Ansmant I., Rehwinkel J., Doerks T., Stark A., Bork P., and Izaurralde E. mRNA degradation by miRNAs and GW182 requires both CCR4:NOT deadenylase and DCP1:DCP2 decapping complexes. Genes Dev. 20 (2006) 1885-1898
-
(2006)
Genes Dev.
, vol.20
, pp. 1885-1898
-
-
Behm-Ansmant, I.1
Rehwinkel, J.2
Doerks, T.3
Stark, A.4
Bork, P.5
Izaurralde, E.6
-
7
-
-
0032185810
-
Localization of ASH1 mRNA particles in living yeast
-
Bertrand E., Chartrand P., Schaefer M., Shenoy S.M., Singer R.H., and Long R.M. Localization of ASH1 mRNA particles in living yeast. Mol. Cell 2 (1998) 437-445
-
(1998)
Mol. Cell
, vol.2
, pp. 437-445
-
-
Bertrand, E.1
Chartrand, P.2
Schaefer, M.3
Shenoy, S.M.4
Singer, R.H.5
Long, R.M.6
-
8
-
-
0034544815
-
Pre-mRNA processing factors are required for nuclear export
-
Brodsky A.S., and Silver P.A. Pre-mRNA processing factors are required for nuclear export. RNA 6 (2000) 1737-1749
-
(2000)
RNA
, vol.6
, pp. 1737-1749
-
-
Brodsky, A.S.1
Silver, P.A.2
-
9
-
-
0021111035
-
Kinetic and thermodynamic characterization of the R17 coat protein-ribonucleic acid interaction
-
Carey J., and Uhlenbeck O.C. Kinetic and thermodynamic characterization of the R17 coat protein-ribonucleic acid interaction. Biochemistry 22 (1983) 2610-2615
-
(1983)
Biochemistry
, vol.22
, pp. 2610-2615
-
-
Carey, J.1
Uhlenbeck, O.C.2
-
10
-
-
33646590585
-
Tethering KSRP, a decay-promoting AU-rich element-binding protein, to mRNAs elicits mRNA decay
-
Chou C.F., Mulky A., Maitra S., Lin W.J., Gherzi R., Kappes J., and Chen C.Y. Tethering KSRP, a decay-promoting AU-rich element-binding protein, to mRNAs elicits mRNA decay. Mol. Cell. Biol. 26 (2006) 3695-3706
-
(2006)
Mol. Cell. Biol.
, vol.26
, pp. 3695-3706
-
-
Chou, C.F.1
Mulky, A.2
Maitra, S.3
Lin, W.J.4
Gherzi, R.5
Kappes, J.6
Chen, C.Y.7
-
11
-
-
0036352777
-
Tethered function assays using 3′ untranslated regions
-
Coller J., and Wickens M. Tethered function assays using 3′ untranslated regions. Methods 26 (2002) 142-150
-
(2002)
Methods
, vol.26
, pp. 142-150
-
-
Coller, J.1
Wickens, M.2
-
12
-
-
0032532439
-
mRNA stabilization by poly(A) binding protein is independent of poly(A) and requires translation
-
Coller J.M., Gray N.K., and Wickens M.P. mRNA stabilization by poly(A) binding protein is independent of poly(A) and requires translation. Genes Dev. 12 (1998) 3226-3235
-
(1998)
Genes Dev.
, vol.12
, pp. 3226-3235
-
-
Coller, J.M.1
Gray, N.K.2
Wickens, M.P.3
-
13
-
-
23044468281
-
The DAZL family proteins are PABP-binding proteins that regulate translation in germ cells
-
Collier B., Gorgoni B., Loveridge C., Cooke H.J., and Gray N.K. The DAZL family proteins are PABP-binding proteins that regulate translation in germ cells. EMBO J. 24 (2005) 2656-2666
-
(2005)
EMBO J.
, vol.24
, pp. 2656-2666
-
-
Collier, B.1
Gorgoni, B.2
Loveridge, C.3
Cooke, H.J.4
Gray, N.K.5
-
14
-
-
0033200316
-
Translation driven by an eIF4G core domain in vivo
-
De Gregorio E., Preiss T., and Hentze M.W. Translation driven by an eIF4G core domain in vivo. EMBO J. 18 (1999) 4865-4874
-
(1999)
EMBO J.
, vol.18
, pp. 4865-4874
-
-
De Gregorio, E.1
Preiss, T.2
Hentze, M.W.3
-
15
-
-
0035035207
-
Tethered-function analysis reveals that elF4E can recruit ribosomes independent of its binding to the cap structure
-
De Gregorio E., Baron J., Preiss T., and Hentze M.W. Tethered-function analysis reveals that elF4E can recruit ribosomes independent of its binding to the cap structure. RNA 7 (2001) 106-113
-
(2001)
RNA
, vol.7
, pp. 106-113
-
-
De Gregorio, E.1
Baron, J.2
Preiss, T.3
Hentze, M.W.4
-
16
-
-
0035834731
-
Poly(A) polymerase and the regulation of cytoplasmic polyadenylation
-
Dickson K.S., Thompson S.R., Gray N.K., and Wickens M. Poly(A) polymerase and the regulation of cytoplasmic polyadenylation. J. Biol. Chem. 276 (2001) 41810-41816
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 41810-41816
-
-
Dickson, K.S.1
Thompson, S.R.2
Gray, N.K.3
Wickens, M.4
-
17
-
-
24144457783
-
Interaction of Staufen1 with the 5′ end of mRNA facilitates translation of these RNAs
-
Dugre-Brisson S., Elvira G., Boulay K., Chatel-Chaix L., Mouland A.J., and DesGroseillers L. Interaction of Staufen1 with the 5′ end of mRNA facilitates translation of these RNAs. Nucleic Acids Res. 33 (2005) 4797-4812
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 4797-4812
-
-
Dugre-Brisson, S.1
Elvira, G.2
Boulay, K.3
Chatel-Chaix, L.4
Mouland, A.J.5
DesGroseillers, L.6
-
18
-
-
22144489833
-
RNAi: The nuts and bolts of the RISC machine
-
Filipowicz W. RNAi: The nuts and bolts of the RISC machine. Cell 122 (2005) 17-20
-
(2005)
Cell
, vol.122
, pp. 17-20
-
-
Filipowicz, W.1
-
19
-
-
33748746509
-
In vivo targeting of the yeast Pop2 deadenylase subunit to reporter transcripts induces their rapid degradation and generates new decay intermediates
-
Finoux A.L., and Seraphin B. In vivo targeting of the yeast Pop2 deadenylase subunit to reporter transcripts induces their rapid degradation and generates new decay intermediates. J. Biol. Chem. 281 (2006) 25940-25947
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 25940-25947
-
-
Finoux, A.L.1
Seraphin, B.2
-
20
-
-
0036318192
-
Multiple roles for SR proteins in trans splicing
-
Furuyama S., and Bruzik J.P. Multiple roles for SR proteins in trans splicing. Mol. Cell. Biol. 22 (2002) 5337-5346
-
(2002)
Mol. Cell. Biol.
, vol.22
, pp. 5337-5346
-
-
Furuyama, S.1
Bruzik, J.P.2
-
21
-
-
0347156907
-
Single mRNA molecules demonstrate probabilistic movement in living mammalian cells
-
Fusco D., Accornero N., Lavoie B., Shenoy S.M., Blanchard J.M., Singer R.H., and Bertrand E. Single mRNA molecules demonstrate probabilistic movement in living mammalian cells. Curr. Biol. 13 (2003) 161-167
-
(2003)
Curr. Biol.
, vol.13
, pp. 161-167
-
-
Fusco, D.1
Accornero, N.2
Lavoie, B.3
Shenoy, S.M.4
Blanchard, J.M.5
Singer, R.H.6
Bertrand, E.7
-
22
-
-
0034282752
-
Multiple portions of poly(A)-binding protein stimulate translation in vivo
-
Gray N.K., Coller J.M., Dickson K.S., and Wickens M. Multiple portions of poly(A)-binding protein stimulate translation in vivo. EMBO J. 19 (2000) 4723-4733
-
(2000)
EMBO J.
, vol.19
, pp. 4723-4733
-
-
Gray, N.K.1
Coller, J.M.2
Dickson, K.S.3
Wickens, M.4
-
23
-
-
2042546096
-
Balancing acts: Molecular control of mammalian iron metabolism
-
Hentze M.W., Muckenthaler M.U., and Andrews N.C. Balancing acts: Molecular control of mammalian iron metabolism. Cell 117 (2004) 285-297
-
(2004)
Cell
, vol.117
, pp. 285-297
-
-
Hentze, M.W.1
Muckenthaler, M.U.2
Andrews, N.C.3
-
24
-
-
0022551258
-
Functional dissection of a eukaryotic transcriptional activator protein, GCN4 of yeast
-
Hope I.A., and Struhl K. Functional dissection of a eukaryotic transcriptional activator protein, GCN4 of yeast. Cell 46 (1986) 885-894
-
(1986)
Cell
, vol.46
, pp. 885-894
-
-
Hope, I.A.1
Struhl, K.2
-
25
-
-
0022622235
-
Separation of DNA binding from the transcription-activating function of a eukaryotic regulatory protein
-
Keegan L., Gill G., and Ptashne M. Separation of DNA binding from the transcription-activating function of a eukaryotic regulatory protein. Science 231 (1986) 699-704
-
(1986)
Science
, vol.231
, pp. 699-704
-
-
Keegan, L.1
Gill, G.2
Ptashne, M.3
-
26
-
-
12944327374
-
Mammalian Staufen1 recruits Upf1 to specific mRNA 3′UTRs so as to elicit mRNA decay
-
Kim Y.K., Furic L., Desgroseillers L., and Maquat L.E. Mammalian Staufen1 recruits Upf1 to specific mRNA 3′UTRs so as to elicit mRNA decay. Cell 120 (2005) 195-208
-
(2005)
Cell
, vol.120
, pp. 195-208
-
-
Kim, Y.K.1
Furic, L.2
Desgroseillers, L.3
Maquat, L.E.4
-
27
-
-
1842585784
-
Mammalian GLD-2 homologs are poly(A) polymerases
-
Kwak J.E., Wang L., Ballantyne S., Kimble J., and Wickens M. Mammalian GLD-2 homologs are poly(A) polymerases. Proc. Natl. Acad. Sci. USA 101 (2004) 4407-4412
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 4407-4412
-
-
Kwak, J.E.1
Wang, L.2
Ballantyne, S.3
Kimble, J.4
Wickens, M.5
-
28
-
-
0032580207
-
Allosteric effects of DNA on transcriptional regulators
-
Lefstin J.A., and Yamamoto K.R. Allosteric effects of DNA on transcriptional regulators. Nature 392 (1998) 885-888
-
(1998)
Nature
, vol.392
, pp. 885-888
-
-
Lefstin, J.A.1
Yamamoto, K.R.2
-
29
-
-
0034672093
-
The spliceosome deposits multiple proteins 20-24 nucleotides upstream of mRNA exon-exon junctions
-
Le Hir H., Izaurralde E., Maquat L.E., and Moore M.J. The spliceosome deposits multiple proteins 20-24 nucleotides upstream of mRNA exon-exon junctions. EMBO J. 19 (2000) 6860-6869
-
(2000)
EMBO J.
, vol.19
, pp. 6860-6869
-
-
Le Hir, H.1
Izaurralde, E.2
Maquat, L.E.3
Moore, M.J.4
-
30
-
-
0034193569
-
Pre-mRNA splicing alters mRNP composition: Evidence for stable association of proteins at exon-exon junctions
-
Le Hir H., Moore M.J., and Maquat L.E. Pre-mRNA splicing alters mRNP composition: Evidence for stable association of proteins at exon-exon junctions. Genes Dev. 14 (2000) 1098-1108
-
(2000)
Genes Dev.
, vol.14
, pp. 1098-1108
-
-
Le Hir, H.1
Moore, M.J.2
Maquat, L.E.3
-
31
-
-
0034406803
-
She2p is a novel RNA-binding protein that recruits the Myo4p-She3p complex to ASH1 mRNA
-
Long R.M., Gu W., Lorimer E., Singer R.H., and Chartrand P. She2p is a novel RNA-binding protein that recruits the Myo4p-She3p complex to ASH1 mRNA. EMBO J. 19 (2000) 6592-6601
-
(2000)
EMBO J.
, vol.19
, pp. 6592-6601
-
-
Long, R.M.1
Gu, W.2
Lorimer, E.3
Singer, R.H.4
Chartrand, P.5
-
32
-
-
0023597556
-
An RNA mutation that increases the affinity of an RNA-protein interaction
-
Lowary P.T., and Uhlenbeck O.C. An RNA mutation that increases the affinity of an RNA-protein interaction. Nucleic Acids Res. 15 (1987) 10483-10493
-
(1987)
Nucleic Acids Res.
, vol.15
, pp. 10483-10493
-
-
Lowary, P.T.1
Uhlenbeck, O.C.2
-
33
-
-
0034704201
-
Human Upf proteins target an mRNA for nonsense-mediated decay when bound downstream of a termination codon
-
Lykke-Andersen J., Shu M.D., and Steitz J.A. Human Upf proteins target an mRNA for nonsense-mediated decay when bound downstream of a termination codon. Cell 103 (2000) 1121-1131
-
(2000)
Cell
, vol.103
, pp. 1121-1131
-
-
Lykke-Andersen, J.1
Shu, M.D.2
Steitz, J.A.3
-
34
-
-
0035823247
-
Communication of the position of exon-exon junctions to the mRNA surveillance machinery by the protein RNPS1
-
Lykke-Andersen J., Shu M.D., and Steitz J.A. Communication of the position of exon-exon junctions to the mRNA surveillance machinery by the protein RNPS1. Science 293 (2001) 1836-1839
-
(2001)
Science
, vol.293
, pp. 1836-1839
-
-
Lykke-Andersen, J.1
Shu, M.D.2
Steitz, J.A.3
-
35
-
-
2542580178
-
The active form of Xp54 RNA helicase in translational repression is an RNA-mediated oligomer
-
Minshall N., and Standart N. The active form of Xp54 RNA helicase in translational repression is an RNA-mediated oligomer. Nucleic Acids Res. 32 (2004) 1325-1334
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1325-1334
-
-
Minshall, N.1
Standart, N.2
-
36
-
-
0035671046
-
A conserved role of a DEAD box helicase in mRNA masking
-
Minshall N., Thom G., and Standart N. A conserved role of a DEAD box helicase in mRNA masking. RNA 7 (2001) 1728-1742
-
(2001)
RNA
, vol.7
, pp. 1728-1742
-
-
Minshall, N.1
Thom, G.2
Standart, N.3
-
37
-
-
0026441426
-
Mutations affecting stability and deadenylation of the yeast MFA2 transcript
-
Muhlrad D., and Parker R. Mutations affecting stability and deadenylation of the yeast MFA2 transcript. Genes Dev. 6 (1992) 2100-2111
-
(1992)
Genes Dev.
, vol.6
, pp. 2100-2111
-
-
Muhlrad, D.1
Parker, R.2
-
39
-
-
4644310115
-
Tethering of human Ago proteins to mRNA mimics the miRNA-mediated repression of protein synthesis
-
Pillai R.S., Artus C.G., and Filipowicz W. Tethering of human Ago proteins to mRNA mimics the miRNA-mediated repression of protein synthesis. RNA 10 (2004) 1518-1525
-
(2004)
RNA
, vol.10
, pp. 1518-1525
-
-
Pillai, R.S.1
Artus, C.G.2
Filipowicz, W.3
-
40
-
-
25844442472
-
A crucial role for GW182 and the DCP1:DCP2 decapping complex in miRNA-mediated gene silencing
-
Rehwinkel J., Behm-Ansmant I., Gatfield D., and Izaurralde E. A crucial role for GW182 and the DCP1:DCP2 decapping complex in miRNA-mediated gene silencing. RNA 11 (2005) 1640-1647
-
(2005)
RNA
, vol.11
, pp. 1640-1647
-
-
Rehwinkel, J.1
Behm-Ansmant, I.2
Gatfield, D.3
Izaurralde, E.4
-
41
-
-
0034705289
-
The RNA binding protein Pub1 modulates the stability of transcripts containing upstream open reading frames
-
Ruiz-Echevarria M.J., and Peltz S.W. The RNA binding protein Pub1 modulates the stability of transcripts containing upstream open reading frames. Cell 101 (2000) 741-751
-
(2000)
Cell
, vol.101
, pp. 741-751
-
-
Ruiz-Echevarria, M.J.1
Peltz, S.W.2
-
42
-
-
1842632326
-
A novel role for shuttling SR proteins in mRNA translation
-
Sanford J.R., Gray N.K., Beckmann K., and Caceres J.F. A novel role for shuttling SR proteins in mRNA translation. Genes Dev. 18 (2004) 755-768
-
(2004)
Genes Dev.
, vol.18
, pp. 755-768
-
-
Sanford, J.R.1
Gray, N.K.2
Beckmann, K.3
Caceres, J.F.4
-
43
-
-
0000641399
-
Antitermination in bacteriophage lambda. The structure of the N36 peptide-boxB RNA complex
-
Scharpf M., Sticht H., Schweimer K., Boehm M., Hoffmann S., and Rosch P. Antitermination in bacteriophage lambda. The structure of the N36 peptide-boxB RNA complex. Eur. J. Biochem. 267 (2000) 2397-2408
-
(2000)
Eur. J. Biochem.
, vol.267
, pp. 2397-2408
-
-
Scharpf, M.1
Sticht, H.2
Schweimer, K.3
Boehm, M.4
Hoffmann, S.5
Rosch, P.6
-
44
-
-
0034634340
-
Allosteric effects of Pit-1 DNA sites on long-term repression in cell type specification
-
Scully K.M., Jacobson E.M., Jepsen K., Lunyak V., Viadiu H., Carriere C., Rose D.W., Hooshmand F., Aggarwal A.K., and Rosenfeld M.G. Allosteric effects of Pit-1 DNA sites on long-term repression in cell type specification. Science 290 (2000) 1127-1131
-
(2000)
Science
, vol.290
, pp. 1127-1131
-
-
Scully, K.M.1
Jacobson, E.M.2
Jepsen, K.3
Lunyak, V.4
Viadiu, H.5
Carriere, C.6
Rose, D.W.7
Hooshmand, F.8
Aggarwal, A.K.9
Rosenfeld, M.G.10
-
45
-
-
33745609509
-
RS domains contact splicing signals and promote splicing by a common mechanism in yeast through humans
-
Shen H., and Green M.R. RS domains contact splicing signals and promote splicing by a common mechanism in yeast through humans. Genes Dev. 20 (2006) 1755-1765
-
(2006)
Genes Dev.
, vol.20
, pp. 1755-1765
-
-
Shen, H.1
Green, M.R.2
-
47
-
-
0642306396
-
New insights into the formation of active nonsense-mediated decay complexes
-
Singh G., and Lykke-Andersen J. New insights into the formation of active nonsense-mediated decay complexes. Trends Biochem. Sci. 28 (2003) 464-466
-
(2003)
Trends Biochem. Sci.
, vol.28
, pp. 464-466
-
-
Singh, G.1
Lykke-Andersen, J.2
-
48
-
-
13444287967
-
Assembly and function of RNA silencing complexes
-
Sontheimer E.J. Assembly and function of RNA silencing complexes. Nat. Rev. Mol. Cell. Biol. 6 (2005) 127-138
-
(2005)
Nat. Rev. Mol. Cell. Biol.
, vol.6
, pp. 127-138
-
-
Sontheimer, E.J.1
-
49
-
-
21044447376
-
Regulation of alternative splicing by PTB and associated factors
-
Spellman R., Rideau A., Matlin A., Gooding C., Robinson F., McGlincy N., Grellscheid S.N., Southby J., Wollerton M., and Smith C.W. Regulation of alternative splicing by PTB and associated factors. Biochem. Soc. Trans. 33 (2005) 457-460
-
(2005)
Biochem. Soc. Trans.
, vol.33
, pp. 457-460
-
-
Spellman, R.1
Rideau, A.2
Matlin, A.3
Gooding, C.4
Robinson, F.5
McGlincy, N.6
Grellscheid, S.N.7
Southby, J.8
Wollerton, M.9
Smith, C.W.10
-
50
-
-
0027453554
-
A complex secondary structure in U1A pre-mRNA that binds two molecules of U1A protein is required for regulation of polyadenylation
-
van Gelder C.W., Gunderson S.I., Jansen E.J., Boelens W.C., Polycarpou-Schwarz M., Mattaj I.W., and van Venrooij W.J. A complex secondary structure in U1A pre-mRNA that binds two molecules of U1A protein is required for regulation of polyadenylation. EMBO J. 12 (1993) 5191-5200
-
(1993)
EMBO J.
, vol.12
, pp. 5191-5200
-
-
van Gelder, C.W.1
Gunderson, S.I.2
Jansen, E.J.3
Boelens, W.C.4
Polycarpou-Schwarz, M.5
Mattaj, I.W.6
van Venrooij, W.J.7
-
51
-
-
0037136552
-
A regulatory cytoplasmic poly(A) polymerase in Caenorhabditis elegans
-
Wang L., Eckmann C.R., Kadyk L.C., Wickens M., and Kimble J. A regulatory cytoplasmic poly(A) polymerase in Caenorhabditis elegans. Nature 419 (2002) 312-316
-
(2002)
Nature
, vol.419
, pp. 312-316
-
-
Wang, L.1
Eckmann, C.R.2
Kadyk, L.C.3
Wickens, M.4
Kimble, J.5
-
52
-
-
33745501015
-
General and specific functions of exonic splicing silencers in splicing control
-
Wang Z., Xiao X., Van Nostrand E., and Burge C.B. General and specific functions of exonic splicing silencers in splicing control. Mol. Cell 23 (2006) 61-70
-
(2006)
Mol. Cell
, vol.23
, pp. 61-70
-
-
Wang, Z.1
Xiao, X.2
Van Nostrand, E.3
Burge, C.B.4
-
53
-
-
0033784534
-
Induced fit in RNA-protein recognition
-
Williamson J.R. Induced fit in RNA-protein recognition. Nat. Struct. Biol. 7 (2000) 834-837
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 834-837
-
-
Williamson, J.R.1
-
54
-
-
0025613131
-
Cooperative binding of R17 coat protein to RNA
-
Witherell G.W., Wu H.N., and Uhlenbeck O.C. Cooperative binding of R17 coat protein to RNA. Biochemistry 29 (1990) 11051-11057
-
(1990)
Biochemistry
, vol.29
, pp. 11051-11057
-
-
Witherell, G.W.1
Wu, H.N.2
Uhlenbeck, O.C.3
|