mRNA stabilization by poly(A) binding protein is independent of poly(A) and requires translation

Genes and Development

Volumn 12, Issue 20, 1998, Pages 3226-3235

  Coller, Jeffery M ^a   Gray, Nicola K ^a   Wickens, Marvin P ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

3' UTRs; mRNA stability; Poly(A); Poly(A) binding protein; Translation

Indexed keywords

HYBRID PROTEIN; MESSENGER RNA; POLYADENYLATED RNA;

ADENYLATION; ARTICLE; NONHUMAN; PRIORITY JOURNAL; PROTEIN RNA BINDING; REPORTER GENE; RNA BINDING; RNA TRANSLATION; YEAST;

EID: 0032532439     PISSN: 08909369     EISSN: None     Source Type: Journal    
DOI: 10.1101/gad.12.20.3226     Document Type: Article

References (50)

1. Amrani, N., M. Minet, M. Le Gouar, F. Lacroute, and F. Wyers. 1997. Yeast Pab1 interacts with Rna15 and participates in the control of the poly(A) tail length in vitro. Mol. Cell. Biol. 17: 3694-3701.
2. Bardwell, V. and M. Wickens. 1990. Purification of RNA and RNA-protein complexes by an R17 coat protein affinity method. Nucleic Acids Res. 18: 6587-6594.
3. Beelman, C. and R. Parker. 1994. Differential effects of translational inhibition in cis and in trans on the decay of the unstable yeast MFA2 mRNA. J. Biol. Chem. 269: 9687-9692.
4. Beelman, C., A. Stevens, G. Caponigro, T. Lagrandeur, L. Hatfield, D. Fortner, and R. Parker. 1996. An essential component of the decapping enzyme required for normal rates of mRNA turnover. Nature 382: 642-646.
5. Bernstein, P., S. Peltz, and J. Ross. 1989. The poly(A)-poly(A)-binding protein complex is a major determinant of mRNA stability in vitro. Mol. Cell. Biol. 9: 659-670.
6. Burd, C., E. Matunis, and G. Dreyfuss. 1991. The multiple RNA-binding domains of the mRNA poly(A)-binding protein have different RNA-binding activities. Mol. Cell Biol. 11: 3419-3424.
7. Caponigro, G. and R. Parker. 1995. Multiple functions for the poly(A)-binding protein in mRNA decapping and deadenylation in yeast. Genes & Dev. 9: 2421-2432.
8. _. 1996. Mechanisms and control of mRNA turnover in Saccharomyces cerevisiae. Microbiol. Rev. 60: 233-249.
9. Chen, C. and A.B. Shyu. 1995. AU-rich elements: Characterization and importance in mRNA degradation. Trends Biochem. Sci. 20: 465-470.
10. Chen, C., N. Xu, and A.B. Shyu. 1995. mRNA decay mediated by two distinct AU-rich elements from c-fos and granulocyte macrophage colony-stimulating factor transcripts: Different deadenylation kinetics and uncoupling from translation. Mol. Cell Biol. 15: 5777-5788.
11. Cleaver, O., K. Patterson, and P. Krieg. 1996. Isolation of poly-A+ RNA. In A laboratory guide to RNA (ed. P. Krieg), pp. 51-63. Wiley-Liss, New York, NY.
12. Deardorff, J. and A. Sachs. 1997. Differential effects of aromatic and charged residue substitutions in the RNA binding domains of the yeast poly(A)-binding protein. J. Mol. Biol. 269: 67-81.
13. Decker, C. and R. Parker. 1993. A turnover pathway for both stable and unstable mRNA in yeast: Evidence for a requirement for deadenylation. Genes & Dev. 7: 1632-1643.
14. Donahue, C. and M. Fedor. 1997. Kinetics of hairpin ribozyme cleavage in yeast. RNA 3: 961-973.
15. Forrester, W., F. Stutz, M. Rosbash, and M. Wickens. 1992. Defects in mRNA 3′-end formation, transcription initiation, and mRNA transport associated with the yeast mutation prp20: Possible coupling of mRNA processing and chromatin structure. Genes & Dev. 6: 1914-1926.
16. Gallie, D. and R. Tanguay. 1994. Poly(A) binds to initiation factors and increases cap-dependent translation in vitro. J. Biol. Chem. 269: 17166-17173.
17. Gietz, R. and A. Sugino. 1988. New yeast - Escherichia coli shuttle vectors constructed with in vitro mutagenized yeast genes lacking six-base pair restriction sites. Gene 74: 527-534.
18. Goldrick, M., D. Kessler, and M. Winkler. 1996. Analysis by nuclease protection. In A laboratory guide to RNA (ed. P. Krieg), pp. 105-131, Wiley-Liss, New York, NY.
19. Gray, N.K., S. Quick, B. Goossen, A. Constable, H. Hirling, L.C. Kühn, M.W. Hentze. 1993. Recombinant iron-regulatory factor functions as an iron-responsive-element-binding protein, a translational repressor and an aconitase: A functional assay for translational repression and direct demonstration of the iron switch. Eur. J. Biochem. 218: 657-667.
20. Harada, K., S. Martin, and A. Frankel. 1996. Selection of RNA-binding peptides in vivo. Nature 380: 175-179.
21. Hatfield, L., C. Beelman, A. Stevens, and R. Parker. 1996. Mutations in trans-acting factors affecting mRNA decapping in Saccharomyces cerevisiae. Mol. Cell. Biol. 16: 5830-5838.
22. Herrick, D. and J. Ross. 1994. The half-life of c-myc mRNA in growing and serum-stimulated cells: Influence of the coding and 3′ untranslated regions and role of ribosome translocation. Mol. Cell. Biol. 14: 2119-2138.
23. Herrick, D., R. Parker, and A. Jacobson. 1990. Identification and comparison of stable and unstable mRNAs in Saccharomyces cerevesiae. Mol. Cell. Biol. 10: 2269-2284.
24. Huang, Y. and G. Carmichael. 1996. Role of polyadenylation in nucleoplasmic transport of mRNA. Mol. Cell. Biol. 16: 1534-1542.
25. Jacobson, A. and S. Peltz. 1996. Interrelationships of the pathways of mRNA decay and translation in eukaryotic cells. Annu. Rev. Biochem. 65: 693-739.
26. Keller, W. and L. Minvielle-Sebastia. 1997. A comparison of mammalian and yeast pre-mRNA 3′ end processing. Curr. Opin. Cell Biol. 9: 329-336.
27. Kessler, S. and A. Sachs. 1998. RNA recognition motif 2 of yeast Pab1p is required for its functional interaction with eukaryotic translation initiation factor 4G. Mol. Cell. Biol. 18: 51-57.
28. Kühn, U. and T. Pieler. 1996. Xenopus poly(A) binding protein: Functional domains in RNA binding and protein-protein interaction. J. Mol. Biol. 256: 20-30.
29. Lowary, P. and O. Uhlenbeck. 1987. An RNA mutation that increases the affinity of an RNA-protein interaction. Nucleic Acids Res. 15: 10483-10493.
30. Lowell, J., D. Rudner, and A. Sachs. 1992. 3′-UTR-dependent deadenylation by the yeast poly(A) nuclease. Genes & Dev. 6: 2088-2099.
31. Minvielle-Sebastia, L., P. Preker, and W. Keller. 1997. The major yeast poly(A) binding protein functions in pre-messenger RNA 3′-end formation. Proc. Natl. Acad. Sci. 94: 7897-7902.
32. Muhlrad, D. and R. Parker. 1992. Mutations affecting stability and deadenylation of the yeast MFA2 transcript. Genes & Dev. 6: 2100-2111.
33. _. 1994. Premature translational termination triggers mRNA decapping. Nature 370: 578-581.
34. Muhlrad, D., C. Decker, and R. Parker. 1994. Deadenylation of the unstable mRNA encoded by the yeast MFA2 gene leads to decapping followed by 5′-3′ digestion of the transcript Genes & Dev. 8: 855-866.
35. _. 1995. Turnover mechanisms of the stable yeast PGK1 mRNA. Mol. Cell. Biol. 15: 2145-2156.
36. Nietfeld, W., H. Mentzel, and T. Pieler. 1990. The Xenopus laevis poly(A) binding protein is composed of multiple functionally independent RNA binding domains. EMBO J. 9: 3699-3705.
37. Nonet, M., C. Scafe, J. Sexton, and R. Young. 1987. Eukaryotic RNA polymerase conditional mutant that rapidly ceases mRNA synthesis. Mol. Cell. Biol. 7: 1602-1611.
38. Pulak, R. and P. Anderson. 1993. mRNA surveillance by the Caenorhabditis elegans smg genes. Genes &. Dev. 7: 1885-1897.
39. Quadt, R., M. Ishikawa, M. Janda, and P. Ahlquist. 1995. Formation of brome mosaic virus RNA-dependent RNA polymerase in yeast requires coexpression of viral proteins and viral RNA. Proc. Natl. Acad. Sci. 92: 4892-4896 .
40. Sachs, A. and R. Davis. 1989. The poly(A) binding protein is required for poly(A) shortening and 60S ribosomal subunit-dependent translation initiation. Cell 58: 857-867.
41. Sachs, A., M. Bond, and R. Kornberg. 1986. A single gene from yeast for both nuclear and cytoplasmic polyadenylate-binding proteins: Domain structure and expression. Cell 45: 827-835.
42. Sachs, A., R. Davis, and R. Kornberg. 1987. A single domain of yeast poly(A)-binding protein is necessary and sufficient for RNA binding and cell viability. Mol. Cell. Biol. 7: 3268-3276.
43. Sachs, A., P. Sarnow, and M. Hentze. 1997. Starting at the beginning, middle, and end: Translation initiation in eukaryotes. Cell 89: 831-838.
44. Sengupta, D., B. Zhang, B. Kraemer, P. Pochart, S. Fields, and M. Wickens. 1996. A three-hybrid system to detect RNA-protein interactions in vivo. Proc. Natl. Acad. Sci. 93: 8496-8501.
45. Snyder, M. 1989. Yeast SPA2 protein localizes to sites of cell growth. J. Cell Biol. 108: 1419-1429.
46. Stripecke, R. and M. Hentze. 1992. Bacteriophage and spliceosomal proteins function as position-dependent cis/trans repressors of mRNA translation in vitro. Nucleic Acids Res. 20: 5555-5564.
47. Tarun, S. and A. Sachs. 1996. Association of the yeast poly(A) tail binding protein with translation initiation factor eIF-4G. EMBO J. 15: 7168-7177.
48. Valcárcel, J., R. Singh, P. Zamore, and M. Green. 1993. The protein Sex-lethal antagonizes the splicing factor U2AF to regulate alternative splicing of transformer pre-mRNA. Nature 362: 171-175.
49. Wickens, M., P. Anderson, and R. J. Jackson. 1997. Life and death in the cytoplasm: Messages from the 3′ end. Curr. Opin. Genet. Dev. 7: 220-232.
50. Witherell, G., J. Gott, and O. Uhlenbeck. 1991. Specific interaction between RNA phage coat proteins and RNA. Prog. Nucleic Acids Res. Mol. Biol. 40: 185-220.