메뉴 건너뛰기




Volumn 8, Issue , 2007, Pages

Localization of TFIIB binding regions using serial analysis of chromatin occupancy

Author keywords

[No Author keywords available]

Indexed keywords

RNA POLYMERASE II; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR FOR RNA POLYMERASE IIB; UNCLASSIFIED DRUG; TRANSCRIPTION FACTOR IIB;

EID: 38349147946     PISSN: None     EISSN: 14712199     Source Type: Journal    
DOI: 10.1186/1471-2199-8-102     Document Type: Article
Times cited : (13)

References (27)
  • 1
    • 33947115777 scopus 로고    scopus 로고
    • Perspectives on the RNA polymerase II core promoter
    • 17073747
    • Juven-Gershon T Hsu JY Kadonaga JT Perspectives on the RNA polymerase II core promoter Biochem Soc Trans 2006, 34(Pt 6):1047-1050. 17073747
    • (2006) Biochem Soc Trans , vol.34 , Issue.PART 6 , pp. 1047-1050
    • Juven-Gershon, T.1    Hsu, J.Y.2    Kadonaga, J.T.3
  • 2
    • 0029889191 scopus 로고    scopus 로고
    • Mechanisms of transcription complex assembly
    • 10.1016/S0955-0674(96)80002-0 8743879
    • Pugh BF Mechanisms of transcription complex assembly Curr Opin Cell Biol 1996, 8(3):303-311. 10.1016/S0955-0674(96)80002-0 8743879
    • (1996) Curr Opin Cell Biol , vol.8 , Issue.3 , pp. 303-311
    • Pugh, B.F.1
  • 3
    • 0030249381 scopus 로고    scopus 로고
    • The role of general initiation factors in transcription by RNA polymerase II
    • 10.1016/0968-0004(96)10050-5 8870495
    • Roeder RG The role of general initiation factors in transcription by RNA polymerase II Trends Biochem Sci 1996, 21(9):327-335. 10.1016/ 0968-0004(96)10050-5 8870495
    • (1996) Trends Biochem Sci , vol.21 , Issue.9 , pp. 327-335
    • Roeder, R.G.1
  • 4
    • 0028283885 scopus 로고
    • Multiple sets of basal factors initiate transcription by RNA polymerase II
    • 8034589
    • Parvin JD Shykind BM Meyers RE Kim J Sharp PA Multiple sets of basal factors initiate transcription by RNA polymerase II J Biol Chem 1994, 269(28):18414-18421. 8034589
    • (1994) J Biol Chem , vol.269 , Issue.28 , pp. 18414-18421
    • Parvin, J.D.1    Shykind, B.M.2    Meyers, R.E.3    Kim, J.4    Sharp, P.A.5
  • 5
    • 0023260308 scopus 로고
    • Factors involved in specific transcription in mammalian RNA polymerase II. Functional analysis of initiation factors IIA and IID and identification of a new factor operating at sequences downstream of the initiation site
    • 3818643
    • Reinberg D Horikoshi M Roeder RG Factors involved in specific transcription in mammalian RNA polymerase II. Functional analysis of initiation factors IIA and IID and identification of a new factor operating at sequences downstream of the initiation site J Biol Chem 1987, 262(7):3322-3330. 3818643
    • (1987) J Biol Chem , vol.262 , Issue.7 , pp. 3322-3330
    • Reinberg, D.1    Horikoshi, M.2    Roeder, R.G.3
  • 6
    • 0023234351 scopus 로고
    • Factors involved in specific transcription by mammalian RNA polymerase II. Purification and functional analysis of initiation factors IIB and IIE
    • 3029109
    • Reinberg D Roeder RG Factors involved in specific transcription by mammalian RNA polymerase II. Purification and functional analysis of initiation factors IIB and IIE J Biol Chem 1987, 262(7):3310-3321. 3029109
    • (1987) J Biol Chem , vol.262 , Issue.7 , pp. 3310-3321
    • Reinberg, D.1    Roeder, R.G.2
  • 7
    • 0000647604 scopus 로고
    • Factors involved in specific transcription by human RNA polymerase II: Analysis by a rapid and quantitative in vitro assay
    • 390420 3925456 10.1073/pnas.82.13.4394
    • Sawadogo M Roeder RG Factors involved in specific transcription by human RNA polymerase II: Analysis by a rapid and quantitative in vitro assay Proc Natl Acad Sci USA 1985, 82(13):4394-4398. 390420 3925456 10.1073/ pnas.82.13.4394
    • (1985) Proc Natl Acad Sci USA , vol.82 , Issue.13 , pp. 4394-4398
    • Sawadogo, M.1    Roeder, R.G.2
  • 8
    • 1142274214 scopus 로고    scopus 로고
    • Structural basis of transcription: An RNA polymerase II-TFIIB cocrystal at 4.5 Angstroms
    • 10.1126/science.1090838 14963322
    • Bushnell DA Westover KD Davis RE Kornberg RD Structural basis of transcription: An RNA polymerase II-TFIIB cocrystal at 4.5 Angstroms Science 2004, 303(5660):983-988. 10.1126/science.1090838 14963322
    • (2004) Science , vol.303 , Issue.5660 , pp. 983-988
    • Bushnell, D.A.1    Westover, K.D.2    Davis, R.E.3    Kornberg, R.D.4
  • 9
    • 0036241663 scopus 로고    scopus 로고
    • Exchange of RNA polymerase II initiation and elongation factors during gene expression in vivo
    • 10.1016/S1097-2765(02)00502-6 11983171
    • Pokholok DK Hannett NM Young RA Exchange of RNA polymerase II initiation and elongation factors during gene expression in vivo Mol Cell 2002, 9(4):799-809. 10.1016/S1097-2765(02)00502-6 11983171
    • (2002) Mol Cell , vol.9 , Issue.4 , pp. 799-809
    • Pokholok, D.K.1    Hannett, N.M.2    Young, R.A.3
  • 10
    • 0029074137 scopus 로고
    • Recycling of the general transcription factors during RNA polymerase II transcription
    • 10.1101/gad.9.12.1479 7601352
    • Zawel L Kumar KP Reinberg D Recycling of the general transcription factors during RNA polymerase II transcription Genes Dev 1995, 9(12):1479-1490. 10.1101/gad.9.12.1479 7601352
    • (1995) Genes Dev , vol.9 , Issue.12 , pp. 1479-1490
    • Zawel, L.1    Kumar, K.P.2    Reinberg, D.3
  • 12
    • 34249862482 scopus 로고    scopus 로고
    • The L1Tc non-LTR retrotransposon of Trypanosoma cruzi contains an internal RNA-pol II-dependent promoter that strongly activates gene transcription and generates unspliced transcripts
    • 1874656 17369274
    • Heras SR Lopez MC Olivares M Thomas MC The L1Tc non-LTR retrotransposon of Trypanosoma cruzi contains an internal RNA-pol II-dependent promoter that strongly activates gene transcription and generates unspliced transcripts Nucleic Acids Res 2007. 1874656 17369274
    • (2007) Nucleic Acids Res
    • Heras, S.R.1    Lopez, M.C.2    Olivares, M.3    Thomas, M.C.4
  • 14
    • 33847687642 scopus 로고    scopus 로고
    • Associations between promoter usage and alternative splicing of the glucocorticoid receptor gene
    • 10.1677/jme.1.02117 17242172
    • Russcher H Dalm VA de Jong FH Brinkmann AO Hofland LJ Lamberts SW Koper JW Associations between promoter usage and alternative splicing of the glucocorticoid receptor gene J Mol Endocrinol 2007, 38(1-2):91-98. 10.1677/jme.1.02117 17242172
    • (2007) J Mol Endocrinol , vol.38 , Issue.1-2 , pp. 91-98
    • Russcher, H.1    Dalm, V.A.2    de Jong, F.H.3    Brinkmann, A.O.4    Hofland, L.J.5    Lamberts, S.W.6    Koper, J.W.7
  • 16
    • 33847627454 scopus 로고    scopus 로고
    • Serial analysis of chromatin occupancy identifies beta-catenin target genes in colorectal carcinoma cells
    • 1805576 17360646 10.1073/pnas.0611576104
    • Yochum GS McWeeney S Rajaraman V Cleland R Peters S Goodman RH Serial analysis of chromatin occupancy identifies beta-catenin target genes in colorectal carcinoma cells Proc Natl Acad Sci USA 2007, 104(9):3324-3329. 1805576 17360646 10.1073/pnas.0611576104
    • (2007) Proc Natl Acad Sci USA , vol.104 , Issue.9 , pp. 3324-3329
    • Yochum, G.S.1    McWeeney, S.2    Rajaraman, V.3    Cleland, R.4    Peters, S.5    Goodman, R.H.6
  • 18
    • 0009611219 scopus 로고
    • Continuous, clonal, insulin- and somatostatin-secreting cell lines established from a transplantable rat islet cell tumor
    • 349648 6106192 10.1073/pnas.77.6.3519
    • Gazdar AF Chick WL Oie HK Sims HL King DL Weir GC Lauris V Continuous, clonal, insulin- and somatostatin-secreting cell lines established from a transplantable rat islet cell tumor Proc Natl Acad Sci USA 1980, 77(6):3519-3523. 349648 6106192 10.1073/pnas.77.6.3519
    • (1980) Proc Natl Acad Sci USA , vol.77 , Issue.6 , pp. 3519-3523
    • Gazdar, A.F.1    Chick, W.L.2    Oie, H.K.3    Sims, H.L.4    King, D.L.5    Weir, G.C.6    Lauris, V.7
  • 19
    • 0029092387 scopus 로고
    • Pyrrolidine dithiocarbamate prevents IL-1-induced nitric oxide synthase mRNA, but not superoxide dismutase mRNA, in insulin producing cells
    • 10.1006/bbrc.1995.1731 7539260
    • Bedoya FJ Flodstrom M Eizirik DL Pyrrolidine dithiocarbamate prevents IL-1-induced nitric oxide synthase mRNA, but not superoxide dismutase mRNA, in insulin producing cells Biochem Biophys Res Commun 1995, 210(3):816-822. 10.1006/bbrc.1995.1731 7539260
    • (1995) Biochem Biophys Res Commun , vol.210 , Issue.3 , pp. 816-822
    • Bedoya, F.J.1    Flodstrom, M.2    Eizirik, D.L.3
  • 21
    • 33847683198 scopus 로고    scopus 로고
    • An antisense transcript induced by Wnt/beta-catenin signaling decreases E2F4
    • 10.1074/jbc.M609391200 17121828
    • Yochum GS Cleland R McWeeney S Goodman RH An antisense transcript induced by Wnt/beta-catenin signaling decreases E2F4 J Biol Chem 2007, 282(2):871-878. 10.1074/jbc.M609391200 17121828
    • (2007) J Biol Chem , vol.282 , Issue.2 , pp. 871-878
    • Yochum, G.S.1    Cleland, R.2    McWeeney, S.3    Goodman, R.H.4
  • 22
    • 34249098071 scopus 로고    scopus 로고
    • Mammalian RNA polymerase II core promoters: Insights from genome-wide studies
    • 10.1038/nrg2026 17486122
    • Sandelin A Carninci P Lenhard B Ponjavic J Hayashizaki Y Hume DA Mammalian RNA polymerase II core promoters: Insights from genome-wide studies Nature reviews 2007, 8(6):424-436. 10.1038/nrg2026 17486122
    • (2007) Nature Reviews , vol.8 , Issue.6 , pp. 424-436
    • Sandelin, A.1    Carninci, P.2    Lenhard, B.3    Ponjavic, J.4    Hayashizaki, Y.5    Hume, D.A.6
  • 23
    • 0035477896 scopus 로고    scopus 로고
    • Core promoters: Active contributors to combinatorial gene regulation
    • 10.1101/gad.937701 11581155
    • Smale ST Core promoters: Active contributors to combinatorial gene regulation Genes Dev 2001, 15(19):2503-2508. 10.1101/gad.937701 11581155
    • (2001) Genes Dev , vol.15 , Issue.19 , pp. 2503-2508
    • Smale, S.T.1
  • 24
    • 34248684091 scopus 로고    scopus 로고
    • Core promoter elements recognized by transcription factor IIB
    • 17073748
    • Deng W Roberts SG Core promoter elements recognized by transcription factor IIB Biochem Soc Trans 2006, 34(Pt 6):1051-1053. 17073748
    • (2006) Biochem Soc Trans , vol.34 , Issue.PART 6 , pp. 1051-1053
    • Deng, W.1    Roberts, S.G.2
  • 25
  • 26
    • 34548219406 scopus 로고    scopus 로고
    • A transcription-independent role for TFIIB in gene looping
    • 10.1016/j.molcel.2007.07.013 17803944
    • Singh BN Hampsey M A transcription-independent role for TFIIB in gene looping Mol Cell 2007, 27(5):806-816. 10.1016/j.molcel.2007.07.013 17803944
    • (2007) Mol Cell , vol.27 , Issue.5 , pp. 806-816
    • Singh, B.N.1    Hampsey, M.2
  • 27
    • 31544463601 scopus 로고    scopus 로고
    • Fast chromatin immunoprecipitation assay
    • 1325209 16397291 10.1093/nar/gnj004
    • Nelson JD Denisenko O Sova P Bomsztyk K Fast chromatin immunoprecipitation assay Nucleic Acids Res 2006, 34(1):e2. 1325209 16397291 10.1093/nar/gnj004
    • (2006) Nucleic Acids Res , vol.34 , Issue.1
    • Nelson, J.D.1    Denisenko, O.2    Sova, P.3    Bomsztyk, K.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.