-
1
-
-
0024316735
-
DNA gyrase can supercoil DNA circles as small as 174 base pairs
-
Bates AD, Maxwell A (1989) DNA gyrase can supercoil DNA circles as small as 174 base pairs. EMBO J 8:1861-1866
-
(1989)
EMBO J
, vol.8
, pp. 1861-1866
-
-
Bates, A.D.1
Maxwell, A.2
-
2
-
-
0035093560
-
Computational modeling predicts the structure and dynamics of chromatin fiber
-
Beard DA, Schlick T (2001) Computational modeling predicts the structure and dynamics of chromatin fiber. Structure (Camb) 9:105-114
-
(2001)
Structure (Camb)
, vol.9
, pp. 105-114
-
-
Beard, D.A.1
Schlick, T.2
-
3
-
-
0029583420
-
Chromatin conformation and salt-induced compaction: Three-dimensional structural information from cryoelectron microscopy
-
Bednar J, Horowitz RA, Dubochet J, Woodcock CL (1995) Chromatin conformation and salt-induced compaction: Three-dimensional structural information from cryoelectron microscopy. J Cell Biol 131:1365-1376
-
(1995)
J Cell Biol
, vol.131
, pp. 1365-1376
-
-
Bednar, J.1
Horowitz, R.A.2
Dubochet, J.3
Woodcock, C.L.4
-
4
-
-
0032564478
-
Nucleosomes, linker DNA, and linker histone form a unique structural motif that directs the higher-order folding and compaction of chromatin
-
Bednar J, Horowitz RH, Grigoryev SA, Carruthers LM, Hansen JC, Koster AJ, Woodcock CL (1998) Nucleosomes, linker DNA, and linker histone form a unique structural motif that directs the higher-order folding and compaction of chromatin. Proc Natl Acad Sci USA 95:14173-14178
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 14173-14178
-
-
Bednar, J.1
Horowitz, R.H.2
Grigoryev, S.A.3
Carruthers, L.M.4
Hansen, J.C.5
Koster, A.J.6
Woodcock, C.L.7
-
6
-
-
0022609306
-
The superstructure of chromatin and its condensation mechanism. I. Synchrotron radiation X-ray scattering results
-
Bordas J, Perez-Grau L, Koch MH, Vega MC, Nave C (1986a) The superstructure of chromatin and its condensation mechanism. I. Synchrotron radiation X-ray scattering results. Eur Biophys J 13:157-173
-
(1986)
Eur Biophys J
, vol.13
, pp. 157-173
-
-
Bordas, J.1
Perez-Grau, L.2
Koch, M.H.3
Vega, M.C.4
Nave, C.5
-
7
-
-
0022565962
-
The superstructure of chromatin and its condensation mechanism. II. Theoretical analysis of the X-ray scattering patterns and model calculations
-
Bordas J, Perez-Grau L, Koch MH, Vega MC, Nave C (1986b) The superstructure of chromatin and its condensation mechanism. II. Theoretical analysis of the X-ray scattering patterns and model calculations. Eur Biophys J 13:175-185
-
(1986)
Eur Biophys J
, vol.13
, pp. 175-185
-
-
Bordas, J.1
Perez-Grau, L.2
Koch, M.H.3
Vega, M.C.4
Nave, C.5
-
8
-
-
0019880872
-
Chromatin superstructure: The next level of structure above the nucleosome has an alternating character. A two-nucleosome based series is generated by probes armed with DNAase-I acting on isolated nuclei
-
Burgoyne LA, Skinner JD (1981) Chromatin superstructure: The next level of structure above the nucleosome has an alternating character. A two-nucleosome based series is generated by probes armed with DNAase-I acting on isolated nuclei. Biochem Biophys Res Commun 99:893-899
-
(1981)
Biochem Biophys Res Commun
, vol.99
, pp. 893-899
-
-
Burgoyne, L.A.1
Skinner, J.D.2
-
9
-
-
0019130753
-
Changes in chromatin folding in solution
-
Butler PJ, Thomas JO (1980) Changes in chromatin folding in solution. J Mol Biol 140:505-529
-
(1980)
J Mol Biol
, vol.140
, pp. 505-529
-
-
Butler, P.J.1
Thomas, J.O.2
-
10
-
-
0345698703
-
Interdigitated solenoid model for compact chromatin fibers
-
Daban JR, Bermudez A (1998) Interdigitated solenoid model for compact chromatin fibers. Biochemistry 37:4299-4304
-
(1998)
Biochemistry
, vol.37
, pp. 4299-4304
-
-
Daban, J.R.1
Bermudez, A.2
-
11
-
-
0036307707
-
Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 resolution
-
Davey CA, Sargent DF, Luger K, Maeder AW, Richmond TJ (2002) Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 resolution. J Mol Biol 319:1097-1113
-
(2002)
J Mol Biol
, vol.319
, pp. 1097-1113
-
-
Davey, C.A.1
Sargent, D.F.2
Luger, K.3
Maeder, A.W.4
Richmond, T.J.5
-
12
-
-
9444297879
-
Nucleosome arrays reveal the two-start organization of the chromatin fiber
-
Dorigo B, Schalch T, Kulangara A, Duda S, Schroeder RR, Richmond TJ (2004) Nucleosome arrays reveal the two-start organization of the chromatin fiber. Science 306:1571-1573
-
(2004)
Science
, vol.306
, pp. 1571-1573
-
-
Dorigo, B.1
Schalch, T.2
Kulangara, A.3
Duda, S.4
Schroeder, R.R.5
Richmond, T.J.6
-
13
-
-
0000878535
-
Solenoidal model for superstructure in chromatin
-
Finch JT, Klug A (1976) Solenoidal model for superstructure in chromatin. Proc Natl Acad Sci USA 73:1897-1901
-
(1976)
Proc Natl Acad Sci USA
, vol.73
, pp. 1897-1901
-
-
Finch, J.T.1
Klug, A.2
-
14
-
-
0023447159
-
Chromatin higher-order structure studied by neutron scattering and scanning transmission electron microscopy
-
Gerchman SE, Ramakrishnan V (1987) Chromatin higher-order structure studied by neutron scattering and scanning transmission electron microscopy. Proc Natl Acad Sci USA 84:7802-7806
-
(1987)
Proc Natl Acad Sci USA
, vol.84
, pp. 7802-7806
-
-
Gerchman, S.E.1
Ramakrishnan, V.2
-
15
-
-
0023091437
-
Transition of chromatin from the "10 nm" lower order structure, to the "30 nm" higher order structure as followed by small angle X-ray scattering
-
Greulich KO, Wachtel E, Ausio J, Seger D, Eisenberg H (1987) Transition of chromatin from the "10 nm" lower order structure, to the "30 nm" higher order structure as followed by small angle X-ray scattering. J Mol Biol 193:709-721
-
(1987)
J Mol Biol
, vol.193
, pp. 709-721
-
-
Greulich, K.O.1
Wachtel, E.2
Ausio, J.3
Seger, D.4
Eisenberg, H.5
-
16
-
-
0029994947
-
Linker histone-dependent DNA structure in linear mononucleosomes
-
Hamiche A, Schultz P, Ramakrishnan V, Oudet P, Prunell A (1996) Linker histone-dependent DNA structure in linear mononucleosomes. J Mol Biol 257:30-42
-
(1996)
J Mol Biol
, vol.257
, pp. 30-42
-
-
Hamiche, A.1
Schultz, P.2
Ramakrishnan, V.3
Oudet, P.4
Prunell, A.5
-
17
-
-
0034522793
-
Asymmetries in the nucleosome core particle at 2.5 resolution
-
Harp JM, Hanson BL, Timm DE, Bunick GJ (2000) Asymmetries in the nucleosome core particle at 2.5 resolution. Acta Crystallogr D Biol Crystallogr 56 Pt 12:1513-1534
-
(2000)
Acta Crystallogr D Biol Crystallogr
, vol.12
, Issue.56 PART
, pp. 1513-1534
-
-
Harp, J.M.1
Hanson, B.L.2
Timm, D.E.3
Bunick, G.J.4
-
18
-
-
0019326489
-
Deoxyribonuclease II as a probe for chromatin structure. II. Mode of cleavage
-
Horz W, Miller F, Klobeck G, Zachau HG (1980) Deoxyribonuclease II as a probe for chromatin structure. II. Mode of cleavage. J Mol Biol 144:329-351
-
(1980)
J Mol Biol
, vol.144
, pp. 329-351
-
-
Horz, W.1
Miller, F.2
Klobeck, G.3
Zachau, H.G.4
-
19
-
-
0019326442
-
Deoxyribonuclease II as a probe for chromatin structure. I. Location of cleavage sites
-
Horz W, Zachau GH (1980) Deoxyribonuclease II as a probe for chromatin structure. I. Location of cleavage sites. J Mol Biol 144:305-327
-
(1980)
J Mol Biol
, vol.144
, pp. 305-327
-
-
Horz, W.1
Zachau, G.H.2
-
20
-
-
0024194667
-
The superstructure of chromatin and its condensation mechanism. V. Effect of linker length, condensation by multivalent cations, solubility and electric dichroism properties
-
Koch MH, Sayers Z, Michon AM, Marquet R, Houssier C, Willfuhr J (1988) The superstructure of chromatin and its condensation mechanism. V. Effect of linker length, condensation by multivalent cations, solubility and electric dichroism properties. Eur Biophys J 16:177-185
-
(1988)
Eur Biophys J
, vol.16
, pp. 177-185
-
-
Koch, M.H.1
Sayers, Z.2
Michon, A.M.3
Marquet, R.4
Houssier, C.5
Willfuhr, J.6
-
21
-
-
38349165235
-
Regular nonsequential arrangements of freely joined chains
-
Lasters I, Staynov DZ (1983) Regular nonsequential arrangements of freely joined chains. Int J Biol Macromol 5:310-311
-
(1983)
Int J Biol Macromol
, vol.5
, pp. 310-311
-
-
Lasters, I.1
Staynov, D.Z.2
-
22
-
-
0030866748
-
Liquid crystalline ordering of nucleosome core particles under macromolecular crowding conditions: Evidence for a discotic columnar hexagonal phase
-
Leforestier A, Livolant F (1997) Liquid crystalline ordering of nucleosome core particles under macromolecular crowding conditions: evidence for a discotic columnar hexagonal phase. Biophys J 73:1771-1776
-
(1997)
Biophys J
, vol.73
, pp. 1771-1776
-
-
Leforestier, A.1
Livolant, F.2
-
23
-
-
0009625239
-
Organization of spacer DNA in chromatin
-
Lohr D, van Holde KE (1979) Organization of spacer DNA in chromatin. Proc Natl Acad Sci USA 76:6326-6330
-
(1979)
Proc Natl Acad Sci USA
, vol.76
, pp. 6326-6330
-
-
Lohr, D.1
van Holde, K.E.2
-
24
-
-
17044365726
-
Nucleosome and chromatin fiber dynamics
-
Luger K, Hansen JC (2005) Nucleosome and chromatin fiber dynamics. Curr Opin Struct Biol 15:188-196
-
(2005)
Curr Opin Struct Biol
, vol.15
, pp. 188-196
-
-
Luger, K.1
Hansen, J.C.2
-
25
-
-
1842411320
-
Crystal structure of the nucleosome core particle at 2.8 resolution
-
Luger K, Mader AW, Richmond RK, Sargent DF, Richmond TJ (1997) Crystal structure of the nucleosome core particle at 2.8 resolution. Nature 389:251-260
-
(1997)
Nature
, vol.389
, pp. 251-260
-
-
Luger, K.1
Mader, A.W.2
Richmond, R.K.3
Sargent, D.F.4
Richmond, T.J.5
-
26
-
-
0019167444
-
Orientation of the nucleosome within the higher order structure of chromatin
-
McGhee JD, Rau DC, Charney E, Felsenfeld G (1980) Orientation of the nucleosome within the higher order structure of chromatin. Cell 22:87-96
-
(1980)
Cell
, vol.22
, pp. 87-96
-
-
McGhee, J.D.1
Rau, D.C.2
Charney, E.3
Felsenfeld, G.4
-
27
-
-
0020645755
-
Higher order structure of chromatin: Orientation of nucleosomes within the 30 nm chromatin solenoid is independent of species and spacer length
-
McGhee JD, Nickol JM, Felsenfeld G, Rau DC (1983) Higher order structure of chromatin: Orientation of nucleosomes within the 30 nm chromatin solenoid is independent of species and spacer length. Cell 33:831-841
-
(1983)
Cell
, vol.33
, pp. 831-841
-
-
McGhee, J.D.1
Nickol, J.M.2
Felsenfeld, G.3
Rau, D.C.4
-
28
-
-
0042167417
-
Nucleosome gaping supports a functional structure for the 30nm chromatin fiber
-
Mozziconacci J, Victor JM (2003) Nucleosome gaping supports a functional structure for the 30nm chromatin fiber. J Struct Biol 143:72-76
-
(2003)
J Struct Biol
, vol.143
, pp. 72-76
-
-
Mozziconacci, J.1
Victor, J.M.2
-
29
-
-
0029115144
-
Probing the conformation of nucleosome linker DNA in situ with pyrimidine dimer formation
-
Pehrson JR (1995) Probing the conformation of nucleosome linker DNA in situ with pyrimidine dimer formation. J Biol Chem 270:22440-22444
-
(1995)
J Biol Chem
, vol.270
, pp. 22440-22444
-
-
Pehrson, J.R.1
-
30
-
-
0031416394
-
Histone H1 and chromatin higher-order structure
-
Ramakrishnan V (1997) Histone H1 and chromatin higher-order structure. Crit Rev Eukaryot Gene Expr 7:215-230
-
(1997)
Crit Rev Eukaryot Gene Expr
, vol.7
, pp. 215-230
-
-
Ramakrishnan, V.1
-
31
-
-
0018416116
-
Nucleosome packing in interphase chromatin
-
Rattner JB, Hamkalo BA (1979) Nucleosome packing in interphase chromatin. J Cell Biol 81:453-457
-
(1979)
J Cell Biol
, vol.81
, pp. 453-457
-
-
Rattner, J.B.1
Hamkalo, B.A.2
-
32
-
-
33646242052
-
EM measurements define the dimensions of the "30-nm" chromatin fiber: Evidence for a compact, interdigitated structure
-
Robinson PJ, Fairall L, Huynh VA, Rhodes D (2006) EM measurements define the dimensions of the "30-nm" chromatin fiber: Evidence for a compact, interdigitated structure. Proc Natl Acad Sci USA 103:6506-6511
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 6506-6511
-
-
Robinson, P.J.1
Fairall, L.2
Huynh, V.A.3
Rhodes, D.4
-
33
-
-
21844436803
-
X-ray structure of a tetranucleosome and its implications for the chromatin fibre
-
Schalch T, Duda S, Sargent DF, Richmond TJ (2005) X-ray structure of a tetranucleosome and its implications for the chromatin fibre. Nature 436:138-141
-
(2005)
Nature
, vol.436
, pp. 138-141
-
-
Schalch, T.1
Duda, S.2
Sargent, D.F.3
Richmond, T.J.4
-
34
-
-
0021022977
-
Energetics of DNA twisting. I. Relation between twist and cyclization probability
-
Shore D, Baldwin RL (1983) Energetics of DNA twisting. I. Relation between twist and cyclization probability. J Mol Biol 170:957-981
-
(1983)
J Mol Biol
, vol.170
, pp. 957-981
-
-
Shore, D.1
Baldwin, R.L.2
-
35
-
-
0021094784
-
Nuclease digestion patterns as a criterion for nucleosome orientation in the higher order structure of chromatin
-
Staynov DZ, Dunn S, Baldwin JP, Crane-Robinson C (1983) Nuclease digestion patterns as a criterion for nucleosome orientation in the higher order structure of chromatin. FEBS Lett 157:311-315
-
(1983)
FEBS Lett
, vol.157
, pp. 311-315
-
-
Staynov, D.Z.1
Dunn, S.2
Baldwin, J.P.3
Crane-Robinson, C.4
-
36
-
-
0002093485
-
Possible nucleosome arrangements in the higher-order structure of chromatin
-
Staynov DZ (1983) Possible nucleosome arrangements in the higher-order structure of chromatin. Int J Biol Macromol 5:3-9
-
(1983)
Int J Biol Macromol
, vol.5
, pp. 3-9
-
-
Staynov, D.Z.1
-
37
-
-
0034663606
-
DNase I digestion reveals alternating asymmetrical protection of the nucleosome by the higher order chromatin structure
-
Staynov DZ (2000) DNase I digestion reveals alternating asymmetrical protection of the nucleosome by the higher order chromatin structure. Nucleic Acids Res 28:3092-3099
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 3092-3099
-
-
Staynov, D.Z.1
-
38
-
-
0032577332
-
Quantitative analysis of DNase I digestion patterns of oligo- and polynucleosomes
-
Staynov DZ, Proykova YG (1998) Quantitative analysis of DNase I digestion patterns of oligo- and polynucleosomes. J Mol Biol 279:59-71
-
(1998)
J Mol Biol
, vol.279
, pp. 59-71
-
-
Staynov, D.Z.1
Proykova, Y.G.2
-
39
-
-
0018743246
-
Higher-order structures of chromatin in solution
-
Suau P, Bradbury EM, Baldwin JP (1979) Higher-order structures of chromatin in solution. Eur J Biochem 97:593-602
-
(1979)
Eur J Biochem
, vol.97
, pp. 593-602
-
-
Suau, P.1
Bradbury, E.M.2
Baldwin, J.P.3
-
40
-
-
0018581187
-
Involvement of histone H1 in the organization of the nucleosome and of the salt-dependent superstructures of chromatin
-
Thoma F, Koller T, Klug A (1979) Involvement of histone H1 in the organization of the nucleosome and of the salt-dependent superstructures of chromatin. J Cell Biol 83:403-427
-
(1979)
J Cell Biol
, vol.83
, pp. 403-427
-
-
Thoma, F.1
Koller, T.2
Klug, A.3
-
41
-
-
0019197607
-
Size-dependence of a stable higher-order structure of chromatin
-
Thomas JO, Butler PJ (1980) Size-dependence of a stable higher-order structure of chromatin. J Mol Biol 144:89-93
-
(1980)
J Mol Biol
, vol.144
, pp. 89-93
-
-
Thomas, J.O.1
Butler, P.J.2
-
42
-
-
0030922941
-
Hybrid trypsinized nucleosomal arrays: Identification of multiple functional roles of the H2A/H2B and H3/H4 N-termini in chromatin fiber compaction
-
Tse C. Hansen JC (1997) Hybrid trypsinized nucleosomal arrays: identification of multiple functional roles of the H2A/H2B and H3/H4 N-termini in chromatin fiber compaction. Biochemistry 36:11381-11388
-
(1997)
Biochemistry
, vol.36
, pp. 11381-11388
-
-
Tse, C.1
Hansen, J.C.2
-
43
-
-
0003903126
-
-
Springer-Verlag, New York
-
van Holde KE (1988) Chromatin. Springer-Verlag, New York
-
(1988)
Chromatin
-
-
van Holde, K.E.1
-
44
-
-
0029066360
-
Position effect variegation in Drosophila is associated with an altered chromatin structure
-
Wallrath Ll, Elgin SC (1995) Position effect variegation in Drosophila is associated with an altered chromatin structure. Genes Dev 9:1263-1277
-
(1995)
Genes Dev
, vol.9
, pp. 1263-1277
-
-
Wallrath, L.L.1
Elgin, S.C.2
-
45
-
-
0026517738
-
A relationship between the helical twist of DNA and the ordered positioning of nucleosomes in all eukaryotic cells
-
Widom J (1992) A relationship between the helical twist of DNA and the ordered positioning of nucleosomes in all eukaryotic cells. Proc Natl Acad Sci USA 89:1095-1099
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 1095-1099
-
-
Widom, J.1
-
46
-
-
0022330034
-
Higher-order structure of long repeat chromatin
-
Widom J, Finch JT, Thomas JO (1985) Higher-order structure of long repeat chromatin. EMBO J 4:3189-3194
-
(1985)
EMBO J
, vol.4
, pp. 3189-3194
-
-
Widom, J.1
Finch, J.T.2
Thomas, J.O.3
-
47
-
-
0022650876
-
Chromatin fibers are left-handed double helices with diameter and mass per unit length that depend on linker length
-
Williams SP, Athey BD, Muglia LJ, Schappe RS, Gough AH, Langmore JP (1986) Chromatin fibers are left-handed double helices with diameter and mass per unit length that depend on linker length. Biophys J 49:233-248
-
(1986)
Biophys J
, vol.49
, pp. 233-248
-
-
Williams, S.P.1
Athey, B.D.2
Muglia, L.J.3
Schappe, R.S.4
Gough, A.H.5
Langmore, J.P.6
-
49
-
-
0027517831
-
A chromatin folding model that incorporates linker variability generates fibers resembling the native structures
-
Woodcock CI, Grigoryev SA, Horowitz RA, Whitaker N (1993) A chromatin folding model that incorporates linker variability generates fibers resembling the native structures. Proc Natl Acad Sci USA 90:9021-9025
-
(1993)
Proc Natl Acad Sci USA
, vol.90
, pp. 9021-9025
-
-
Woodcock, C.I.1
Grigoryev, S.A.2
Horowitz, R.A.3
Whitaker, N.4
-
50
-
-
0021250785
-
The higher-order structure of chromatin: Evidence for a helical ribbon arrangement
-
Woodcock CI, Frado LI, Rattner JB (1984) The higher-order structure of chromatin: Evidence for a helical ribbon arrangement. J Cell Biol 99:42-52
-
(1984)
J Cell Biol
, vol.99
, pp. 42-52
-
-
Woodcock, C.I.1
Frado, L.I.2
Rattner, J.B.3
-
51
-
-
0017688585
-
Higher order coiling of DNA in chromatin
-
Worcel A, Benyajati (1977) Higher order coiling of DNA in chromatin. Cell 12:83-100
-
(1977)
Cell
, vol.12
, pp. 83-100
-
-
Worcel, A.B.1
-
52
-
-
0019542662
-
Structure of chromatin and the linking number of DNA
-
Worcel A, Strogatz S, Riley D (1981) Structure of chromatin and the linking number of DNA. Proc Natl Acad Sci USA 78:1461-1465
-
(1981)
Proc Natl Acad Sci USA
, vol.78
, pp. 1461-1465
-
-
Worcel, A.1
Strogatz, S.2
Riley, D.3
|