메뉴 건너뛰기




Volumn 47, Issue 1, 2008, Pages 183-194

Catalysis by the isolated tryptophan tryptophylquinone-containing subunit of aromatic amine dehydrogenase is distinct from native enzyme and synthetic model compounds and allows further probing of TTQ mechanism

Author keywords

[No Author keywords available]

Indexed keywords

BENZYLAMINES; KINETIC ISOTOPE EFFECTS (KIE); TRYPTOPHYLQUINONE;

EID: 37849031515     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi701690u     Document Type: Article
Times cited : (4)

References (43)
  • 2
    • 18844371727 scopus 로고    scopus 로고
    • Structure and mechanism of tryptophylquinone enzymes
    • Davidson, V. L. (2005) Structure and mechanism of tryptophylquinone enzymes, Bioorg. Chem. 33, 159-170.
    • (2005) Bioorg. Chem , vol.33 , pp. 159-170
    • Davidson, V.L.1
  • 4
    • 0023217278 scopus 로고
    • Purification and properties of methylamine dehydrogenase from Paracoccus denitrificans
    • Husain, M., and Davidson, V. L. (1987) Purification and properties of methylamine dehydrogenase from Paracoccus denitrificans, J. Bacteriol. 169, 1712-1717.
    • (1987) J. Bacteriol , vol.169 , pp. 1712-1717
    • Husain, M.1    Davidson, V.L.2
  • 5
    • 0025785660 scopus 로고
    • A new cofactor in a prokaryotic enzyme: Tryptophan tryptophylquinone as the redox prosthetic group in methylamine dehydrogenase
    • McIntire, W. S., Wemmer, D. E., Chistoserdov, A., and Lidstrom, M. E. (1991) A new cofactor in a prokaryotic enzyme: tryptophan tryptophylquinone as the redox prosthetic group in methylamine dehydrogenase, Science 252, 817-824.
    • (1991) Science , vol.252 , pp. 817-824
    • McIntire, W.S.1    Wemmer, D.E.2    Chistoserdov, A.3    Lidstrom, M.E.4
  • 6
    • 0025087101 scopus 로고
    • Cloning and sequencing of the structural gene for the small subunit of methylamine dehydrogenase from Methylobacterium extorquens AMI: Evidence for two tryptophan residues involved in the active center
    • Chistoserdov, A. Y., Tsygankov, Y. D., and Lidstrom, M. E. (1990) Cloning and sequencing of the structural gene for the small subunit of methylamine dehydrogenase from Methylobacterium extorquens AMI: evidence for two tryptophan residues involved in the active center, Biochem. Biophys. Res. Commun. 172, 211-216.
    • (1990) Biochem. Biophys. Res. Commun , vol.172 , pp. 211-216
    • Chistoserdov, A.Y.1    Tsygankov, Y.D.2    Lidstrom, M.E.3
  • 7
    • 0033537697 scopus 로고    scopus 로고
    • Enzymatic H-transfer requires vibration-driven extreme tunneling
    • Basran, J., Sutcliffe, M. J., and Scrutton, N. S. (1999) Enzymatic H-transfer requires vibration-driven extreme tunneling, Biochemistry 38, 3218-3222.
    • (1999) Biochemistry , vol.38 , pp. 3218-3222
    • Basran, J.1    Sutcliffe, M.J.2    Scrutton, N.S.3
  • 8
    • 0035794224 scopus 로고    scopus 로고
    • Importance of barrier shape in enzyme-catalyzed reactions. Vibrationally assisted hydrogen tunneling in tryptophan tryptophylquinone-dependent amine dehydrogenases
    • Basran, J., Patel, S., Sutcliffe, M. J., and Scrutton, N. S. (2001) Importance of barrier shape in enzyme-catalyzed reactions. Vibrationally assisted hydrogen tunneling in tryptophan tryptophylquinone-dependent amine dehydrogenases, J. Biol. Chem. 276, 6234-6242.
    • (2001) J. Biol. Chem , vol.276 , pp. 6234-6242
    • Basran, J.1    Patel, S.2    Sutcliffe, M.J.3    Scrutton, N.S.4
  • 10
    • 34047242540 scopus 로고    scopus 로고
    • Tunneling and classical paths for proton transfer in an enzyme reaction dominated by tunneling: Oxidation of tryptamine by aromatic amine dehydrogenase
    • Masgrau, L., Ranaghan, K. E., Scrutton, N. S., Mulholland, A. J., and Sutcliffe, M. J. (2007) Tunneling and classical paths for proton transfer in an enzyme reaction dominated by tunneling: oxidation of tryptamine by aromatic amine dehydrogenase, J. Phys. Chem. B 111, 3032-3047.
    • (2007) J. Phys. Chem. B , vol.111 , pp. 3032-3047
    • Masgrau, L.1    Ranaghan, K.E.2    Scrutton, N.S.3    Mulholland, A.J.4    Sutcliffe, M.J.5
  • 11
    • 34047264783 scopus 로고    scopus 로고
    • Proton tunneling in aromatic amine dehydrogenase is driven by a short-range sub-picosecond promoting vibration: Consistency of simulation and theory with experiment
    • Johannissen, L. O., Hay, S., Scrutton, N. S., and Sutcliffe, M. J. (2007) Proton tunneling in aromatic amine dehydrogenase is driven by a short-range sub-picosecond promoting vibration: consistency of simulation and theory with experiment, J. Phys. Chem. B 111, 2631-2638.
    • (2007) J. Phys. Chem. B , vol.111 , pp. 2631-2638
    • Johannissen, L.O.1    Hay, S.2    Scrutton, N.S.3    Sutcliffe, M.J.4
  • 12
    • 0029122664 scopus 로고
    • Electron transfer reactions between aromatic amine dehydrogenase and azurin
    • Hyun, Y. L., and Davidson, V. L. (1995) Electron transfer reactions between aromatic amine dehydrogenase and azurin, Biochemistry 34, 12249-12254.
    • (1995) Biochemistry , vol.34 , pp. 12249-12254
    • Hyun, Y.L.1    Davidson, V.L.2
  • 13
    • 33845983329 scopus 로고    scopus 로고
    • Atomic level insight into the oxidative half-reaction of aromatic amine dehydrogenase
    • Roujeinikova, A., Scrutton, N. S., and Leys, D. (2006) Atomic level insight into the oxidative half-reaction of aromatic amine dehydrogenase, J. Biol. Chem. 281, 40264-40272.
    • (2006) J. Biol. Chem , vol.281 , pp. 40264-40272
    • Roujeinikova, A.1    Scrutton, N.S.2    Leys, D.3
  • 14
    • 34547897921 scopus 로고    scopus 로고
    • New insights into the reductive half-reaction mechanism of aromatic amine dehydrogenase revealed by reaction with carbinolamine substrates
    • Roujeinikova, A., Hothi, P., Masgrau, L., Sutcliffe, M. J., Scrutton, N. S., and Leys, D. (2007) New insights into the reductive half-reaction mechanism of aromatic amine dehydrogenase revealed by reaction with carbinolamine substrates, J. Biol. Chem. 282, 23766-23777.
    • (2007) J. Biol. Chem , vol.282 , pp. 23766-23777
    • Roujeinikova, A.1    Hothi, P.2    Masgrau, L.3    Sutcliffe, M.J.4    Scrutton, N.S.5    Leys, D.6
  • 15
    • 0028900533 scopus 로고
    • Mechanistic studies of aromatic amine dehydrogenase, a tryptophan tryptophylquinone enzyme
    • Hyun, Y. L., and Davidson, V. L. (1995) Mechanistic studies of aromatic amine dehydrogenase, a tryptophan tryptophylquinone enzyme, Biochemistry 34, 816-823.
    • (1995) Biochemistry , vol.34 , pp. 816-823
    • Hyun, Y.L.1    Davidson, V.L.2
  • 16
    • 0026581745 scopus 로고
    • Reactions of benzylamines with methylamine dehydrogenase. Evidence for a carbanionic reaction intermediate and reaction mechanism similar to eukaryotic quinoproteins
    • Davidson, V. L., Jones, L. H., and Graichen, M. E. (1992) Reactions of benzylamines with methylamine dehydrogenase. Evidence for a carbanionic reaction intermediate and reaction mechanism similar to eukaryotic quinoproteins, Biochemistry 31, 3385-3390.
    • (1992) Biochemistry , vol.31 , pp. 3385-3390
    • Davidson, V.L.1    Jones, L.H.2    Graichen, M.E.3
  • 17
    • 34547901822 scopus 로고    scopus 로고
    • Isotope effects reveal that para-substituted benzylamines are poor reactivity probes of quinoprotein mechanism for aromatic amine dehydrogenase
    • Hothi, P., Roujeinikova, A., Khadra, K. A., Lee, M., Cullis, P., Leys, D., and Scrutton, N. S. (2007) Isotope effects reveal that para-substituted benzylamines are poor reactivity probes of quinoprotein mechanism for aromatic amine dehydrogenase, Biochemistry 46, 9250-9259.
    • (2007) Biochemistry , vol.46 , pp. 9250-9259
    • Hothi, P.1    Roujeinikova, A.2    Khadra, K.A.3    Lee, M.4    Cullis, P.5    Leys, D.6    Scrutton, N.S.7
  • 18
    • 0026775879 scopus 로고
    • Synthesis and characterization of the model compound of active site cofactor TTQ of bacterial methylamine dehydrogenases
    • Itoh, S., Ogino, M., Komatsu, M., and Ohshiro, Y. (1992) Synthesis and characterization of the model compound of active site cofactor TTQ of bacterial methylamine dehydrogenases, J. Am. Chem. Soc. 114, 7294-7295.
    • (1992) J. Am. Chem. Soc , vol.114 , pp. 7294-7295
    • Itoh, S.1    Ogino, M.2    Komatsu, M.3    Ohshiro, Y.4
  • 19
    • 0029124418 scopus 로고
    • A model compound of the novel cofactor tryptophan tryptophylquinone of bacterial methylamine dehydrogenases. Synthesis and physicochemical properties
    • Itoh, S., Ogino, M., Haranou, S., Terasaka, T., Ando, T., Komatsu, M., Ohshiro, Y., Fukuzumi, S., Kano, K., Takagi, K., and Ikeda, T. (1995) A model compound of the novel cofactor tryptophan tryptophylquinone of bacterial methylamine dehydrogenases. Synthesis and physicochemical properties, J. Am. Chem. Soc. 117, 1485-1493.
    • (1995) J. Am. Chem. Soc , vol.117 , pp. 1485-1493
    • Itoh, S.1    Ogino, M.2    Haranou, S.3    Terasaka, T.4    Ando, T.5    Komatsu, M.6    Ohshiro, Y.7    Fukuzumi, S.8    Kano, K.9    Takagi, K.10    Ikeda, T.11
  • 21
    • 0030773380 scopus 로고    scopus 로고
    • Synthesis, physicochemical properties, and amine-oxidation reaction of indolequinone derivatives as model compounds of novel organic cofactor TTQ of amine dehydrogenases
    • Itoh, S., Takada, N., Ando, T., Haranou, S., Huang, X., Uenoyama, Y., Ohshiro, Y., Komatsu, M., and Fukuzumi, S. (1997) Synthesis, physicochemical properties, and amine-oxidation reaction of indolequinone derivatives as model compounds of novel organic cofactor TTQ of amine dehydrogenases, J. Org. Chem. 62, 5898-5907.
    • (1997) J. Org. Chem , vol.62 , pp. 5898-5907
    • Itoh, S.1    Takada, N.2    Ando, T.3    Haranou, S.4    Huang, X.5    Uenoyama, Y.6    Ohshiro, Y.7    Komatsu, M.8    Fukuzumi, S.9
  • 22
    • 0034645583 scopus 로고    scopus 로고
    • Effects of metal Ions on the electronic, redox, and catalytic properties of cofactor TTQ of quinoprotein amine dehydrogenases
    • Itoh, S., Taniguchi, M., Takada, N., Nagatomo, S., Kitagawa, T., and Fukuzumi, S. (2000) Effects of metal Ions on the electronic, redox, and catalytic properties of cofactor TTQ of quinoprotein amine dehydrogenases, J. Am. Chem. Soc. 122, 12087-12097.
    • (2000) J. Am. Chem. Soc , vol.122 , pp. 12087-12097
    • Itoh, S.1    Taniguchi, M.2    Takada, N.3    Nagatomo, S.4    Kitagawa, T.5    Fukuzumi, S.6
  • 24
    • 0027483247 scopus 로고
    • Deuterium kinetic isotope effect and stopped-flow kinetic studies of the quinoprotein methylamine dehydrogenase
    • Brooks, H. B., Jones, L. H., and Davidson, V. L. (1993) Deuterium kinetic isotope effect and stopped-flow kinetic studies of the quinoprotein methylamine dehydrogenase, Biochemistry 32, 2725-2729.
    • (1993) Biochemistry , vol.32 , pp. 2725-2729
    • Brooks, H.B.1    Jones, L.H.2    Davidson, V.L.3
  • 25
    • 0020680275 scopus 로고
    • Crystallization and properties of aromatic amine dehydrogenase from Pseudomonas sp
    • Iwaki, M., Yagi, T., Horiike, K., Saeki, Y., Ushijima, T., and Nozaki, M. (1983) Crystallization and properties of aromatic amine dehydrogenase from Pseudomonas sp, Arch. Biochem. Biophys. 220, 253-262.
    • (1983) Arch. Biochem. Biophys , vol.220 , pp. 253-262
    • Iwaki, M.1    Yagi, T.2    Horiike, K.3    Saeki, Y.4    Ushijima, T.5    Nozaki, M.6
  • 26
    • 28044447627 scopus 로고    scopus 로고
    • Tryptophan tryptophylquinone cofactor biogenesis in the aromatic amine dehydrogenase of Alcaligenes faecalis. Cofactor assembly and catalytic properties of recombinant enzyme expressed in Paracoccus denitrificans
    • Hothi, P., Khadra, K. A., Combe, J. P., Leys, D., and Scrutton, N. S. (2005) Tryptophan tryptophylquinone cofactor biogenesis in the aromatic amine dehydrogenase of Alcaligenes faecalis. Cofactor assembly and catalytic properties of recombinant enzyme expressed in Paracoccus denitrificans, FEBS J. 272, 5894-5909.
    • (2005) FEBS J , vol.272 , pp. 5894-5909
    • Hothi, P.1    Khadra, K.A.2    Combe, J.P.3    Leys, D.4    Scrutton, N.S.5
  • 27
    • 0021093469 scopus 로고
    • Characterization of methylamine dehydrogenase from Bacterium W3A1. Interaction with reductants and amino-containing compounds
    • Kenney, W. C., and McIntire, W. S. (1983) Characterization of methylamine dehydrogenase from Bacterium W3A1. Interaction with reductants and amino-containing compounds, Biochemistry 22, 3858-3868.
    • (1983) Biochemistry , vol.22 , pp. 3858-3868
    • Kenney, W.C.1    McIntire, W.S.2
  • 28
    • 0016749447 scopus 로고
    • Determination of dissociation constants and specific rate constants of enzyme-substrate (or protein-ligand) interactions from rapid reaction kinetic data
    • Strickland, S., Palmer, G., and Massey, V. (1975) Determination of dissociation constants and specific rate constants of enzyme-substrate (or protein-ligand) interactions from rapid reaction kinetic data, J. Biol. Chem. 250, 4048-4052.
    • (1975) J. Biol. Chem , vol.250 , pp. 4048-4052
    • Strickland, S.1    Palmer, G.2    Massey, V.3
  • 30
    • 4243664295 scopus 로고
    • A survey of Hammett substituent constants and resonance and field parameters
    • Hansch, C., Leo, A., and Taft, R. W. (1991) A survey of Hammett substituent constants and resonance and field parameters, Chem. Rev. 91, 165-195.
    • (1991) Chem. Rev , vol.91 , pp. 165-195
    • Hansch, C.1    Leo, A.2    Taft, R.W.3
  • 32
    • 0026643221 scopus 로고
    • Cofactor-directed inactivation by nucleophilic amines of the quinoprotein methylamine dehydrogenase from Paracoccus denitrificans
    • Davidson, V. L., and Jones, L. H. (1992) Cofactor-directed inactivation by nucleophilic amines of the quinoprotein methylamine dehydrogenase from Paracoccus denitrificans, Biochim. Biophys. Acta 1121, 104-110.
    • (1992) Biochim. Biophys. Acta , vol.1121 , pp. 104-110
    • Davidson, V.L.1    Jones, L.H.2
  • 33
    • 0023641250 scopus 로고
    • Electronegativity of aromatic amines as a basis for the development of ground state inhibitors of lysyl oxidase
    • Williamson, P. R., and Kagan, H. M. (1987) Electronegativity of aromatic amines as a basis for the development of ground state inhibitors of lysyl oxidase, J. Biol. Chem. 262, 14520-14524.
    • (1987) J. Biol. Chem , vol.262 , pp. 14520-14524
    • Williamson, P.R.1    Kagan, H.M.2
  • 34
    • 0025887806 scopus 로고
    • Structure-function studies of substrate oxidation by bovine serum amine oxidase: Relationship to cofactor structure and mechanism
    • Hartmann, C., and Klinman, J. P. (1991) Structure-function studies of substrate oxidation by bovine serum amine oxidase: relationship to cofactor structure and mechanism, Biochemistry 30, 4605-4611.
    • (1991) Biochemistry , vol.30 , pp. 4605-4611
    • Hartmann, C.1    Klinman, J.P.2
  • 35
    • 0036301901 scopus 로고    scopus 로고
    • Environmentally coupled hydrogen tunneling. Linking catalysis to dynamics
    • Knapp, M. J., and Klinman, J. P. (2002) Environmentally coupled hydrogen tunneling. Linking catalysis to dynamics, Eur. J. Biochem. 269, 3113-3121.
    • (2002) Eur. J. Biochem , vol.269 , pp. 3113-3121
    • Knapp, M.J.1    Klinman, J.P.2
  • 36
    • 0141828475 scopus 로고    scopus 로고
    • Kinetic isotope effects as probes for hydrogen tunneling, coupled motion and dynamics contributions to enzyme catalysis
    • Kohen, A. (2003) Kinetic isotope effects as probes for hydrogen tunneling, coupled motion and dynamics contributions to enzyme catalysis, Prog. React. Kinet. Mech. 28, 119-156.
    • (2003) Prog. React. Kinet. Mech , vol.28 , pp. 119-156
    • Kohen, A.1
  • 38
    • 33749676457 scopus 로고    scopus 로고
    • Computational studies of enzyme mechanism: Linking theory with experiment in the analysis of enzymic H-tunnelling
    • Sutcliffe, M. J., and Scrutton, N. S. (2006) Computational studies of enzyme mechanism: linking theory with experiment in the analysis of enzymic H-tunnelling, Phys. Chem. Chem. Phys. 8, 4510-4516.
    • (2006) Phys. Chem. Chem. Phys , vol.8 , pp. 4510-4516
    • Sutcliffe, M.J.1    Scrutton, N.S.2
  • 40
    • 0037012441 scopus 로고    scopus 로고
    • Identification of a protein-promoting vibration in the reaction catalyzed by horse liver alcohol dehydrogenase
    • Caratzoulas, S., Mincer, J. S., and Schwartz, S. D. (2002) Identification of a protein-promoting vibration in the reaction catalyzed by horse liver alcohol dehydrogenase, J. Am. Chem. Soc. 124, 3270-3276.
    • (2002) J. Am. Chem. Soc , vol.124 , pp. 3270-3276
    • Caratzoulas, S.1    Mincer, J.S.2    Schwartz, S.D.3
  • 41
    • 1542317813 scopus 로고    scopus 로고
    • Simulations of the large kinetic isotope effect and the temperature dependence of the hydrogen atom transfer in lipoxygenase
    • Olsson, M. H. M., Siegbahn, P. E. M., and Warshel, A. (2004) Simulations of the large kinetic isotope effect and the temperature dependence of the hydrogen atom transfer in lipoxygenase, J. Am. Chem. Soc. 126, 2820-2828.
    • (2004) J. Am. Chem. Soc , vol.126 , pp. 2820-2828
    • Olsson, M.H.M.1    Siegbahn, P.E.M.2    Warshel, A.3
  • 42
    • 1842763785 scopus 로고    scopus 로고
    • Temperature dependence of kinetic isotope effects for enzymatic carbon-hydrogen bond cleavage
    • Siebrand, W., and Smedarchina, Z. (2004) Temperature dependence of kinetic isotope effects for enzymatic carbon-hydrogen bond cleavage, J. Phys. Chem. B 108, 4185-4195.
    • (2004) J. Phys. Chem. B , vol.108 , pp. 4185-4195
    • Siebrand, W.1    Smedarchina, Z.2
  • 43
    • 0043236031 scopus 로고    scopus 로고
    • The first experimental test of the hypothesis that enzymes have evolved to enhance hydrogen tunneling
    • Doll, K. M., Bender, B. R., and Finke, R. G. (2003) The first experimental test of the hypothesis that enzymes have evolved to enhance hydrogen tunneling, J. Am. Chem. Soc. 125, 10877-10884.
    • (2003) J. Am. Chem. Soc , vol.125 , pp. 10877-10884
    • Doll, K.M.1    Bender, B.R.2    Finke, R.G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.