-
2
-
-
29144518532
-
The ubiquitin domain superfold: Structure-based sequence alignments and characterization of binding epitopes
-
Kiel, C., and Serrano, L. (2006) The ubiquitin domain superfold: Structure-based sequence alignments and characterization of binding epitopes, J. Mol. Biol 355, 821-844.
-
(2006)
J. Mol. Biol
, vol.355
, pp. 821-844
-
-
Kiel, C.1
Serrano, L.2
-
3
-
-
0034253588
-
Evolution and function of ubiquitin-like protein-conugation systems
-
Hochstrasser, M. (2000) Evolution and function of ubiquitin-like protein-conugation systems, Nat. Cell Biol. 2, E153-E157.
-
(2000)
Nat. Cell Biol
, vol.2
-
-
Hochstrasser, M.1
-
4
-
-
0035969236
-
The NEDD8 system is essential for cell cycle progression and morphogenetic pathway in mice
-
Tateishi, K., Omata, M., Tanaka, K., and Chiba, T. (2001) The NEDD8 system is essential for cell cycle progression and morphogenetic pathway in mice, J. Biol. Chem. 155, 571-579.
-
(2001)
J. Biol. Chem
, vol.155
, pp. 571-579
-
-
Tateishi, K.1
Omata, M.2
Tanaka, K.3
Chiba, T.4
-
5
-
-
0034523266
-
SUMO-Nonclassical ubiquitin
-
Melchior, F. (2000) SUMO-Nonclassical ubiquitin, Annu. Rev. Cell Dev. Biol. 16, 591-626.
-
(2000)
Annu. Rev. Cell Dev. Biol
, vol.16
, pp. 591-626
-
-
Melchior, F.1
-
6
-
-
0035336677
-
Protein modification by SUMO
-
Hay, R. T. (2001) Protein modification by SUMO, Trends Biochem. Sci. 26, 332-333.
-
(2001)
Trends Biochem. Sci
, vol.26
, pp. 332-333
-
-
Hay, R.T.1
-
7
-
-
0035286622
-
SUMO, ubiquitin's mysterious cousin
-
Muller, S., Hoege, C., Pyrowolakis, G., and Jentch, S. (2001) SUMO, ubiquitin's mysterious cousin, Nat. Rev. 2, 202-210.
-
(2001)
Nat. Rev
, vol.2
, pp. 202-210
-
-
Muller, S.1
Hoege, C.2
Pyrowolakis, G.3
Jentch, S.4
-
8
-
-
1342279419
-
SUMO modification of proteins other than transcription factors
-
Watts, F. Z. (2004) SUMO modification of proteins other than transcription factors, Cell Dev. Biol. 15, 211-220.
-
(2004)
Cell Dev. Biol
, vol.15
, pp. 211-220
-
-
Watts, F.Z.1
-
9
-
-
33745156511
-
Ubiquitin and SUMO systems in the reguration of mitotic checkpoints
-
Gutierrez, G. J., and Ronai, Z. (2006) Ubiquitin and SUMO systems in the reguration of mitotic checkpoints, Trends Biochem. Sci. 31, 324-332.
-
(2006)
Trends Biochem. Sci
, vol.31
, pp. 324-332
-
-
Gutierrez, G.J.1
Ronai, Z.2
-
10
-
-
3042644131
-
A M55V polymorphism in a novel SUMO gene (SUMO-4) differentially activates heat shock transcription factors and is associated with susceptability to type I diabetes mellitus
-
Bohren, K. M., Nadkarni, V., Song, J. H., Gabbay, K. H., and Owerbach, D. (2004) A M55V polymorphism in a novel SUMO gene (SUMO-4) differentially activates heat shock transcription factors and is associated with susceptability to type I diabetes mellitus, J. Biol. Chem. 279, 27233-27238.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 27233-27238
-
-
Bohren, K.M.1
Nadkarni, V.2
Song, J.H.3
Gabbay, K.H.4
Owerbach, D.5
-
11
-
-
0032504021
-
Structure determination of the small ubiquitin-related modifier SUMO-1
-
Bayer, P., Arndt, A., Metzger, S., Mahajan, R., Melchior, F., Jaenicke, R., and Becker, J. (1998) Structure determination of the small ubiquitin-related modifier SUMO-1, J. Mol. Biol. 280, 275-286.
-
(1998)
J. Mol. Biol
, vol.280
, pp. 275-286
-
-
Bayer, P.1
Arndt, A.2
Metzger, S.3
Mahajan, R.4
Melchior, F.5
Jaenicke, R.6
Becker, J.7
-
12
-
-
14344261035
-
Solution structure of human SUMO-3 C47S and its binding surface for UBC9
-
Ding, H., Xu, Y., Chen, Q., Dai, H., Tang, Y., Wu, J., and Shi, Y. (2005) Solution structure of human SUMO-3 C47S and its binding surface for UBC9, Biochemistry 44, 2790-2799.
-
(2005)
Biochemistry
, vol.44
, pp. 2790-2799
-
-
Ding, H.1
Xu, Y.2
Chen, Q.3
Dai, H.4
Tang, Y.5
Wu, J.6
Shi, Y.7
-
13
-
-
7044269671
-
Crystal structures of the human SUMO-2 protein at 1.6 Å and 1.2 Å resolution: Implication on the functional differences of SUMO proteins
-
Huang, W. C., Ko, T. P., Li, S. S. L., and Wang, A. H.-J. (2004) Crystal structures of the human SUMO-2 protein at 1.6 Å and 1.2 Å resolution: Implication on the functional differences of SUMO proteins, Eur. J. Biochem. 271, 4114-4122.
-
(2004)
Eur. J. Biochem
, vol.271
, pp. 4114-4122
-
-
Huang, W.C.1
Ko, T.P.2
Li, S.S.L.3
Wang, A.H.-J.4
-
14
-
-
0035856546
-
Two folded conformers of ubiquitin revealed by high-pressure NMR
-
Kitahara, R., Yamada, H., and Akasaka, K. (2001) Two folded conformers of ubiquitin revealed by high-pressure NMR, Biochemistry 40, 13556-13563.
-
(2001)
Biochemistry
, vol.40
, pp. 13556-13563
-
-
Kitahara, R.1
Yamada, H.2
Akasaka, K.3
-
15
-
-
0037452877
-
Close identity of a pressure-stabilized intermediate with a kinetic intermediate in protein folding
-
Kitahara, R., and Akasaka, K. (2003) Close identity of a pressure-stabilized intermediate with a kinetic intermediate in protein folding, Proc. Natl. Acad. Sci. U.S.A. 100, 3167-3172.
-
(2003)
Proc. Natl. Acad. Sci. U.S.A
, vol.100
, pp. 3167-3172
-
-
Kitahara, R.1
Akasaka, K.2
-
16
-
-
14644424521
-
NMR snapshots of a fluctuating protein structure: Ubiquitin at 30 bar-3 kbar
-
Kitahara, R., Yokoyama, S., and Akasaka, K. (2005) NMR snapshots of a fluctuating protein structure: Ubiquitin at 30 bar-3 kbar, J. Mol. Biol. 347, 277-285.
-
(2005)
J. Mol. Biol
, vol.347
, pp. 277-285
-
-
Kitahara, R.1
Yokoyama, S.2
Akasaka, K.3
-
17
-
-
33748935136
-
Evolutionally conserved intermediates between ubiquitin and NEDD8
-
Kitahara, R., Yamaguchi, Y., Sakata, E., Kasuya, T., Tanaka, K., Kato, K., Yokoyama, S., and Akasaka, K. (2006) Evolutionally conserved intermediates between ubiquitin and NEDD8, J. Mol. Biol. 363, 395-404.
-
(2006)
J. Mol. Biol
, vol.363
, pp. 395-404
-
-
Kitahara, R.1
Yamaguchi, Y.2
Sakata, E.3
Kasuya, T.4
Tanaka, K.5
Kato, K.6
Yokoyama, S.7
Akasaka, K.8
-
18
-
-
0032923295
-
Cell-free production and stable-isotope labeling of milligram quantities of proteins
-
Kigawa, T., Yabuki, T., Yoshida, Y., Tsutsui, M., Ito, Y., Shibata, T., and Yokoyama, S. (1999) Cell-free production and stable-isotope labeling of milligram quantities of proteins, FEBS Lett. 442, 15-19.
-
(1999)
FEBS Lett
, vol.442
, pp. 15-19
-
-
Kigawa, T.1
Yabuki, T.2
Yoshida, Y.3
Tsutsui, M.4
Ito, Y.5
Shibata, T.6
Yokoyama, S.7
-
19
-
-
3543147238
-
Preparation of Escherichia coli cell extract for highly productive cell-free protein expression
-
Kigawa, T., Yabuki, T., Matsuda, N., Matsuda, T., Nakajima, R., Tanaka, A., and Yokoyama, S. (2004) Preparation of Escherichia coli cell extract for highly productive cell-free protein expression, J. Struct. Funct. Genomics 5, 63-68.
-
(2004)
J. Struct. Funct. Genomics
, vol.5
, pp. 63-68
-
-
Kigawa, T.1
Yabuki, T.2
Matsuda, N.3
Matsuda, T.4
Nakajima, R.5
Tanaka, A.6
Yokoyama, S.7
-
20
-
-
33947572914
-
Improving cell-free protein synthesis for stable-isotope labeling
-
Matsuda, T., Koshiba, S., Tochio, N., Seki, E., Iwasaki, N., Yabuki, T., Inoue, M., Yokoyama, S., and Kigawa, T. (2007) Improving cell-free protein synthesis for stable-isotope labeling, J. Biomol. NMR 37, 225-229.
-
(2007)
J. Biomol. NMR
, vol.37
, pp. 225-229
-
-
Matsuda, T.1
Koshiba, S.2
Tochio, N.3
Seki, E.4
Iwasaki, N.5
Yabuki, T.6
Inoue, M.7
Yokoyama, S.8
Kigawa, T.9
-
22
-
-
0025341339
-
15N spectra of proteins: Heteronuclear triple-resonance three-dimensional NMR spectroscopy. Application to calmodulin
-
15N spectra of proteins: Heteronuclear triple-resonance three-dimensional NMR spectroscopy. Application to calmodulin, Biochemistry 29, 4659-4667.
-
(1990)
Biochemistry
, vol.29
, pp. 4659-4667
-
-
Ikura, M.1
Kay, L.E.2
Bax, A.3
-
23
-
-
0028019827
-
Multidimensional nuclear magnetic resonance methods for protein studies
-
Bax, A. (1994) Multidimensional nuclear magnetic resonance methods for protein studies, Curr. Opin. Struct. Biol. 4, 738-744.
-
(1994)
Curr. Opin. Struct. Biol
, vol.4
, pp. 738-744
-
-
Bax, A.1
-
24
-
-
0003489517
-
-
Academic Press, New York
-
Cavanagh, J., Fairbrother, W. J., Palmer, A. G., and Skelton, N. J. (1996) Protein NMR Spectroscopy, Principles and Practice, Academic Press, New York.
-
(1996)
Protein NMR Spectroscopy, Principles and Practice
-
-
Cavanagh, J.1
Fairbrother, W.J.2
Palmer, A.G.3
Skelton, N.J.4
-
25
-
-
0029400480
-
NMRPipe: A multidimensional spectral processing system based on UNIX pipes
-
Delaglio, F., Grzesiek, S., Vuister, G. W., Zhu, G., Pfeifer, J., and Bax, A. (1995) NMRPipe: A multidimensional spectral processing system based on UNIX pipes, J. Biomol. NMR 6, 277-293.
-
(1995)
J. Biomol. NMR
, vol.6
, pp. 277-293
-
-
Delaglio, F.1
Grzesiek, S.2
Vuister, G.W.3
Zhu, G.4
Pfeifer, J.5
Bax, A.6
-
26
-
-
34249765651
-
NMRView: A computer program for the visualization and analysis of NMR data
-
Johnson, B. A., and Blevins, R. A. (1994) NMRView: A computer program for the visualization and analysis of NMR data, J. Biomol. NMR 4, 603-614.
-
(1994)
J. Biomol. NMR
, vol.4
, pp. 603-614
-
-
Johnson, B.A.1
Blevins, R.A.2
-
27
-
-
34547923673
-
KUJIRA, a package of integrated modules for systematic and interactive analysis of NMR data directed to high-throughput NMR structure studies
-
Kobayashi, N., Iwahara, J., Koshiba, S., Tomizawa, T., Tochio, N., Guntert, P., Kigawa, T., and Yokoyama, S. (2007) KUJIRA, a package of integrated modules for systematic and interactive analysis of NMR data directed to high-throughput NMR structure studies, J. Biomol. NMR 39, 31-52.
-
(2007)
J. Biomol. NMR
, vol.39
, pp. 31-52
-
-
Kobayashi, N.1
Iwahara, J.2
Koshiba, S.3
Tomizawa, T.4
Tochio, N.5
Guntert, P.6
Kigawa, T.7
Yokoyama, S.8
-
29
-
-
0033003335
-
Protein backbone angle restraints from searching a database for chemical shift and sequence homology
-
Cornilescu, G., Delaglio, F., and Bax, A. (1999) Protein backbone angle restraints from searching a database for chemical shift and sequence homology, J. Biomol. NMR 13, 289-302.
-
(1999)
J. Biomol. NMR
, vol.13
, pp. 289-302
-
-
Cornilescu, G.1
Delaglio, F.2
Bax, A.3
-
30
-
-
0031576336
-
Torsion angle dynamics for NMR structure calculation with the new program DYANA
-
Güntert, P., Mumenthaler, C., and Wüthrich, K. (1997) Torsion angle dynamics for NMR structure calculation with the new program DYANA, J. Mol. Biol. 273, 283-298.
-
(1997)
J. Mol. Biol
, vol.273
, pp. 283-298
-
-
Güntert, P.1
Mumenthaler, C.2
Wüthrich, K.3
-
31
-
-
0030339738
-
AQUA and PROCHECK-NMR: Programs for checking the quality of protein structures solved by NMR
-
Laskowski, R. A., Rullmann, J. A., MacArthur, M. W., Kaptain, R., and Thornton, J. M. (1996) AQUA and PROCHECK-NMR: Programs for checking the quality of protein structures solved by NMR, J. Biomol. NMR 8, 477-486.
-
(1996)
J. Biomol. NMR
, vol.8
, pp. 477-486
-
-
Laskowski, R.A.1
Rullmann, J.A.2
MacArthur, M.W.3
Kaptain, R.4
Thornton, J.M.5
-
32
-
-
0029881007
-
MOLMOL: A program for display and analysis of macromolecular structures
-
Koradi, R., Billeter, M., and Wüthrich, K. (1996) MOLMOL: A program for display and analysis of macromolecular structures, J. Mol. Graphics 14, 51-55.
-
(1996)
J. Mol. Graphics
, vol.14
, pp. 51-55
-
-
Koradi, R.1
Billeter, M.2
Wüthrich, K.3
-
33
-
-
0036308102
-
Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA
-
Herrmann, T., Güntert, P., and Wüthrich, K. (2002) Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA, J. Mol. Biol. 319, 209-227.
-
(2002)
J. Mol. Biol
, vol.319
, pp. 209-227
-
-
Herrmann, T.1
Güntert, P.2
Wüthrich, K.3
-
34
-
-
0034912667
-
-
Akasaka, K., and Yamada, H. (2001) On-Line Cell High Pressure Nuclear Magnetic Resonance Technique: Application to Protein Studies, in Methods in Enzymology, 338: Nuclear Magnetic Resonance of Biological Macromolecules, Part A (James, T. L., et al., Eds.) pp 134-158, Academic Press, New York.
-
Akasaka, K., and Yamada, H. (2001) On-Line Cell High Pressure Nuclear Magnetic Resonance Technique: Application to Protein Studies, in Methods in Enzymology, Volume 338: Nuclear Magnetic Resonance of Biological Macromolecules, Part A (James, T. L., et al., Eds.) pp 134-158, Academic Press, New York.
-
-
-
-
35
-
-
33646900712
-
Probing conformational fluctuation of proteins by pressure perturbation
-
Akasaka, K. (2006) Probing conformational fluctuation of proteins by pressure perturbation, Chem. Rev. 106, 1814-1835.
-
(2006)
Chem. Rev
, vol.106
, pp. 1814-1835
-
-
Akasaka, K.1
-
36
-
-
0035247443
-
Pressure-resisting cell for high-pressure, high-resolution nuclear magnetic resonance measurements at very high magnetic fields
-
Yamada, H., Nishikawa, K., Honda, M., Shimura, T., Tabayashi, K., and Akasaka, K. (2001) Pressure-resisting cell for high-pressure, high-resolution nuclear magnetic resonance measurements at very high magnetic fields, Rev. Sci. Instrum. 72, 1463-1471.
-
(2001)
Rev. Sci. Instrum
, vol.72
, pp. 1463-1471
-
-
Yamada, H.1
Nishikawa, K.2
Honda, M.3
Shimura, T.4
Tabayashi, K.5
Akasaka, K.6
-
37
-
-
33947100840
-
NMR characterization of the energy landscape of SUMO-1 in the native-state ensemble
-
Kumar, A., Srivastava, S., and Hosur, R. V. (2007) NMR characterization of the energy landscape of SUMO-1 in the native-state ensemble, J. Mol. Biol. 367, 1480-1493.
-
(2007)
J. Mol. Biol
, vol.367
, pp. 1480-1493
-
-
Kumar, A.1
Srivastava, S.2
Hosur, R.V.3
-
38
-
-
3843125368
-
Dynamin interacts with members of the sumoylation machinery
-
Mishra, R. K., Jatian, S. S., Kumar, A., Simhadri, V. R., Hosur, R. V., and Mittal, R. (2004) Dynamin interacts with members of the sumoylation machinery, J. Biol. Chem. 279, 31445-31454.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 31445-31454
-
-
Mishra, R.K.1
Jatian, S.S.2
Kumar, A.3
Simhadri, V.R.4
Hosur, R.V.5
Mittal, R.6
-
39
-
-
0347416977
-
The structure of the APPBP1-UBA3-NEDD8-ATP complex reveals the basis for selective ubiquitin-like protein activation by an El
-
Walden, H., Podgorski, M. S., Huang, D. T., Miller, D. W., Howard, R. J., Minor, D. L., Jr., Holton, J. M., and Shulman, B. A. (2003) The structure of the APPBP1-UBA3-NEDD8-ATP complex reveals the basis for selective ubiquitin-like protein activation by an El, Mol. Cell 12, 1427-1437.
-
(2003)
Mol. Cell
, vol.12
, pp. 1427-1437
-
-
Walden, H.1
Podgorski, M.S.2
Huang, D.T.3
Miller, D.W.4
Howard, R.J.5
Minor Jr., D.L.6
Holton, J.M.7
Shulman, B.A.8
-
40
-
-
0033516511
-
Characterization of the binding interface between ubiquitin and class I human ubiquitin-conjugating enzyme 2b by multidimensional heteronuclear NMR spectroscopy in solution
-
Miura, T., Klaus, W., Gsell, B., Miyamoto, C., and Senn, H. (1999) Characterization of the binding interface between ubiquitin and class I human ubiquitin-conjugating enzyme 2b by multidimensional heteronuclear NMR spectroscopy in solution, J. Mol. Biol. 290, 213-228.
-
(1999)
J. Mol. Biol
, vol.290
, pp. 213-228
-
-
Miura, T.1
Klaus, W.2
Gsell, B.3
Miyamoto, C.4
Senn, H.5
-
41
-
-
0037368598
-
Parkin binds the Rpn10 subunit of 26S proteasomes through its ubiquitin-like domain,
-
4
-
Sakata, E., Yamaguchi, Y., Kurimoto, E., Kikuchi, J., Yokoyama, S., Yamada, S., Kawahara, H., Yokosawa, H., Hatori, N., Mizuno, Y., Tanaka, K., and Kato, K. (2003) Parkin binds the Rpn10 subunit of 26S proteasomes through its ubiquitin-like domain, EMBO Rep. 4, 301-306.
-
(2003)
EMBO Rep
, pp. 301-306
-
-
Sakata, E.1
Yamaguchi, Y.2
Kurimoto, E.3
Kikuchi, J.4
Yokoyama, S.5
Yamada, S.6
Kawahara, H.7
Yokosawa, H.8
Hatori, N.9
Mizuno, Y.10
Tanaka, K.11
Kato, K.12
-
42
-
-
34548433080
-
Theoretical study of the partial molar volume change associated with the pressure-induced structural transition of ubiquitin
-
Imai, T., Ohyama, S., Kovalenko, A., and Hirata, F. (2007) Theoretical study of the partial molar volume change associated with the pressure-induced structural transition of ubiquitin, Protein Sci. 16, 1927-1933.
-
(2007)
Protein Sci
, vol.16
, pp. 1927-1933
-
-
Imai, T.1
Ohyama, S.2
Kovalenko, A.3
Hirata, F.4
-
43
-
-
0033594989
-
Thermal versus guanidine-induced unfolding of ubiquitin. An analysis in terms of the contributions from charge-charge interactions to protein stability
-
Ibara-Molero, B., Loladze, V. V., Makhatadze, G. I., and Sanchez-Ruiz, J. M. (1999) Thermal versus guanidine-induced unfolding of ubiquitin. An analysis in terms of the contributions from charge-charge interactions to protein stability, Biochemistry 38, 8138-8149.
-
(1999)
Biochemistry
, vol.38
, pp. 8138-8149
-
-
Ibara-Molero, B.1
Loladze, V.V.2
Makhatadze, G.I.3
Sanchez-Ruiz, J.M.4
-
44
-
-
0032921714
-
Cold denaturation of ubiquitin
-
Ibarra-Molero, B., Makhatadze, G. I., and Sanchez-Ruiz, J. M. (1999) Cold denaturation of ubiquitin, Biochim. Biophys. Acta 1429, 384-390.
-
(1999)
Biochim. Biophys. Acta
, vol.1429
, pp. 384-390
-
-
Ibarra-Molero, B.1
Makhatadze, G.I.2
Sanchez-Ruiz, J.M.3
|