메뉴 건너뛰기




Volumn 70, Issue 1, 2008, Pages 54-62

A comparison of SCOP and CATH with respect to domain-domain interactions

Author keywords

CATH; Domain domain interactions; Protein protein interactions; SCOP

Indexed keywords

ACCURACY; ARTICLE; BINDING SITE; CLASSIFICATION; DOMAIN CLASSIFICATION SYSTEM; DOMAIN DOMAIN INTERACTION; FALSE NEGATIVE RESULT; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE; SEQUENCE HOMOLOGY; STRUCTURE ANALYSIS;

EID: 37349038507     PISSN: 08873585     EISSN: 10970134     Source Type: Journal    
DOI: 10.1002/prot.21496     Document Type: Article
Times cited : (9)

References (31)
  • 1
    • 0030028728 scopus 로고    scopus 로고
    • Principles of protein-protein interactions
    • Jones S, Thornton JM. Principles of protein-protein interactions. Proc Natl Acad Sci USA 1996;93:13-20.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 13-20
    • Jones, S.1    Thornton, J.M.2
  • 2
    • 0003187567 scopus 로고    scopus 로고
    • The atomic structure of protein-protein recognition sites
    • Lo Conte L, Chothia C, Janin J. The atomic structure of protein-protein recognition sites. J Mol Biol 1999;285:2177-2198.
    • (1999) J Mol Biol , vol.285 , pp. 2177-2198
    • Lo Conte, L.1    Chothia, C.2    Janin, J.3
  • 3
    • 23044458151 scopus 로고    scopus 로고
    • Principles of protein-protein interactions
    • Teichmann SA. Principles of protein-protein interactions. Bioinformatics 2002;18 (Suppl 2):S249.
    • (2002) Bioinformatics , vol.18 , Issue.SUPPL. 2
    • Teichmann, S.A.1
  • 4
    • 0036122073 scopus 로고    scopus 로고
    • Prediction of protein-protein interaction sites in heterocomplexes with neural networks
    • Fariselli P, Pazos F, Valencia A, Casadio R. Prediction of protein-protein interaction sites in heterocomplexes with neural networks. Eur J Biochem 2002;269:1356-1361.
    • (2002) Eur J Biochem , vol.269 , pp. 1356-1361
    • Fariselli, P.1    Pazos, F.2    Valencia, A.3    Casadio, R.4
  • 5
    • 33646122452 scopus 로고    scopus 로고
    • An algorithm for predicting protein-protein interaction sites: Abnormally exposed amino acid residues and secondary structure elements
    • Hoskins J, Lovell S, Blundell TL. An algorithm for predicting protein-protein interaction sites: abnormally exposed amino acid residues and secondary structure elements. Protein Sci 2006;15: 1017-1029.
    • (2006) Protein Sci , vol.15 , pp. 1017-1029
    • Hoskins, J.1    Lovell, S.2    Blundell, T.L.3
  • 6
    • 33747879307 scopus 로고    scopus 로고
    • SHARP2: Protein-protein interaction predictions using patch analysis
    • Murakami Y, Jones S. SHARP2: protein-protein interaction predictions using patch analysis. Bioinformatics 2006;22:1794-1795.
    • (2006) Bioinformatics , vol.22 , pp. 1794-1795
    • Murakami, Y.1    Jones, S.2
  • 7
    • 0037197902 scopus 로고    scopus 로고
    • Interrogating protein domain-domain interaction networks through structural biology
    • Aloy P, Russell RB. Interrogating protein domain-domain interaction networks through structural biology. Proc Natl Acad Sci USA 2002;99:5896-5901.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 5896-5901
    • Aloy, P.1    Russell, R.B.2
  • 8
    • 9144244232 scopus 로고    scopus 로고
    • Pieper U, Eswar N, Braberg H, Madhusudhan MS, Davis FP, Stuart AC, Mirkovic N, Rossi A, Marti-Renom MA, Fiser A. MODBASE, a database of annotated comparative protein structure models, and associated resources. Nucleic Acids Res 2004;32(Database issue): D217-D222.
    • Pieper U, Eswar N, Braberg H, Madhusudhan MS, Davis FP, Stuart AC, Mirkovic N, Rossi A, Marti-Renom MA, Fiser A. MODBASE, a database of annotated comparative protein structure models, and associated resources. Nucleic Acids Res 2004;32(Database issue): D217-D222.
  • 9
    • 0037110589 scopus 로고    scopus 로고
    • MULTIPROSPECTOR: An algorithm for the prediction of protein-protein domain-domain interactions by multimeric threading
    • Lu L, Lu J, Skolnick H. MULTIPROSPECTOR: an algorithm for the prediction of protein-protein domain-domain interactions by multimeric threading. Proteins 2002;49:350-364.
    • (2002) Proteins , vol.49 , pp. 350-364
    • Lu, L.1    Lu, J.2    Skolnick, H.3
  • 12
    • 5044235050 scopus 로고    scopus 로고
    • Ten thousand domain-domain interactions for the molecular biologist
    • Aloy P, Russell RB. Ten thousand domain-domain interactions for the molecular biologist. Nat Biotechnol 2004;22:1317, 1321.
    • (2004) Nat Biotechnol , vol.22 , Issue.1317 , pp. 1321
    • Aloy, P.1    Russell, R.B.2
  • 13
    • 0028961335 scopus 로고
    • SCOP: A structural classification of proteins database for the investigation of sequences and structures
    • Murzin AG, Brenner SE, Hubbard T, Chothia C. SCOP: a structural classification of proteins database for the investigation of sequences and structures. J Mol Biol 1995;247:536-540.
    • (1995) J Mol Biol , vol.247 , pp. 536-540
    • Murzin, A.G.1    Brenner, S.E.2    Hubbard, T.3    Chothia, C.4
  • 19
    • 0033200307 scopus 로고    scopus 로고
    • A systematic comparison of protein structure classifications: SCOP, CATH and fssp
    • Hadley C, Jones DT. A systematic comparison of protein structure classifications: SCOP, CATH and fssp. Struct Fold Des 1999;7:1099-1112.
    • (1999) Struct Fold Des , vol.7 , pp. 1099-1112
    • Hadley, C.1    Jones, D.T.2
  • 21
    • 33846052595 scopus 로고    scopus 로고
    • Jefferson ER, Walsh TP, Barton GJ. SNAPPI-DB: a database and API of structures, interfaces and alignments for protein-protein interactions. Nucleic Acids Res 2007;35(Database issue):D580-D589.
    • Jefferson ER, Walsh TP, Barton GJ. SNAPPI-DB: a database and API of structures, interfaces and alignments for protein-protein interactions. Nucleic Acids Res 2007;35(Database issue):D580-D589.
  • 22
    • 0032169688 scopus 로고    scopus 로고
    • PQS: A protein quaternary structure file server
    • Henrick K, Thornton JM. PQS: a protein quaternary structure file server. Trends Biochem Sci 1998;23:358-361.
    • (1998) Trends Biochem Sci , vol.23 , pp. 358-361
    • Henrick, K.1    Thornton, J.M.2
  • 23
    • 33751088850 scopus 로고    scopus 로고
    • Biological units and their effect upon the properties and prediction of protein-protein interactions
    • Jefferson ER, Walsh TP, Barton GJ. Biological units and their effect upon the properties and prediction of protein-protein interactions. J Mol Biol 2006;364:1118-1129.
    • (2006) J Mol Biol , vol.364 , pp. 1118-1129
    • Jefferson, E.R.1    Walsh, T.P.2    Barton, G.J.3
  • 24
    • 9144231249 scopus 로고    scopus 로고
    • Golovin A, Oldfield TJ, Tate JG, Velankar S, Barton GJ, Boutselakis H, Dimitropoulos D, Fillon J, Hussain A, Ionides JM. E-MSD: an integrated data resource for bioinformatics. Nucleic Acids Res 2004;32(Database issue):D211-D216.
    • Golovin A, Oldfield TJ, Tate JG, Velankar S, Barton GJ, Boutselakis H, Dimitropoulos D, Fillon J, Hussain A, Ionides JM. E-MSD: an integrated data resource for bioinformatics. Nucleic Acids Res 2004;32(Database issue):D211-D216.
  • 25
    • 13444288174 scopus 로고    scopus 로고
    • Velankar S, McNeil P, Mittard-Runte V, Suarez A, Barrell D, Apweiler R, Henrick K. E-MSD: an integrated data resource for bioinformatics. Nucleic Acids Res 2005;33(Database issue):D262-D265.
    • Velankar S, McNeil P, Mittard-Runte V, Suarez A, Barrell D, Apweiler R, Henrick K. E-MSD: an integrated data resource for bioinformatics. Nucleic Acids Res 2005;33(Database issue):D262-D265.
  • 26
    • 0017187836 scopus 로고
    • The nature of the accessible and buried surfaces in proteins
    • Chothia C. The nature of the accessible and buried surfaces in proteins. J Mol Biol 1976;105:1-12.
    • (1976) J Mol Biol , vol.105 , pp. 1-12
    • Chothia, C.1
  • 27
    • 0035970298 scopus 로고    scopus 로고
    • Mapping protein family domain-domain interactions: Intramolecular and intermolecular protein family domain-domain interaction repertoires in the pdb and yeast
    • Park J, Lappe M, Teichmann SA. Mapping protein family domain-domain interactions: intramolecular and intermolecular protein family domain-domain interaction repertoires in the pdb and yeast. J Mol Biol 2001;307:929-938.
    • (2001) J Mol Biol , vol.307 , pp. 929-938
    • Park, J.1    Lappe, M.2    Teichmann, S.A.3
  • 28
    • 0042386609 scopus 로고    scopus 로고
    • The relationship between sequence and domain-domain interaction divergence in proteins
    • Aloy P, Ceulemans H, Stark A, Russell RB. The relationship between sequence and domain-domain interaction divergence in proteins. J Mol Biol 2003;332:989-998.
    • (2003) J Mol Biol , vol.332 , pp. 989-998
    • Aloy, P.1    Ceulemans, H.2    Stark, A.3    Russell, R.B.4
  • 29
    • 0035224503 scopus 로고    scopus 로고
    • Protein-protein interaction map inference using interacting domain profile pairs
    • Wojcik J, Schachter V. Protein-protein interaction map inference using interacting domain profile pairs. Bioinformatics 2001;17 (Suppl 1):S296-305.
    • (2001) Bioinformatics , vol.17 , Issue.SUPPL. 1
    • Wojcik, J.1    Schachter, V.2
  • 30
    • 0037178842 scopus 로고    scopus 로고
    • Imp, gtp, and 6-phosphoryl-imp complexes of recombinant mouse muscle adenylosuccinate synthetase
    • Iancu CV, Borza T, Fromm HJ, Honzatko RB. Imp, gtp, and 6-phosphoryl-imp complexes of recombinant mouse muscle adenylosuccinate synthetase. J Biol Chem 2002;277:26779-26787.
    • (2002) J Biol Chem , vol.277 , pp. 26779-26787
    • Iancu, C.V.1    Borza, T.2    Fromm, H.J.3    Honzatko, R.B.4
  • 31
    • 0346705942 scopus 로고    scopus 로고
    • Recombinant mouse muscle adenylosuccinate synthetase: Overexpression, kinetics, and crystal structure
    • Iancu CV, Borza T, Choe JY, Fromm HJ, Honzatko RB. Recombinant mouse muscle adenylosuccinate synthetase: overexpression, kinetics, and crystal structure. J Biol Chem 2001;276:42146-42152.
    • (2001) J Biol Chem , vol.276 , pp. 42146-42152
    • Iancu, C.V.1    Borza, T.2    Choe, J.Y.3    Fromm, H.J.4    Honzatko, R.B.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.