메뉴 건너뛰기




Volumn 80, Issue 1, 2008, Pages 27-46

Relationship of serological subtype, basic core promoter and precore mutations to genotypes/subgenotypes of hepatitis B virus

Author keywords

Basic core promoter; Genotype; Phylogenetic analysis; Precore; Serotype

Indexed keywords

ACCURACY; ARTICLE; BOOTSTRAPPING; CHI SQUARE TEST; COMPUTER PROGRAM; GENE LOCUS; GENE MUTATION; GENETIC ANALYSIS; GENETIC LINKAGE; GENETIC RECOMBINATION; GENETIC VARIABILITY; GENOTYPE; HEPATITIS B VIRUS; LOGISTIC REGRESSION ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PROMOTER REGION; SEROLOGY; STATISTICAL SIGNIFICANCE; VIRUS STRAIN;

EID: 36849038593     PISSN: 01466615     EISSN: 10969071     Source Type: Journal    
DOI: 10.1002/jmv.21049     Document Type: Article
Times cited : (173)

References (59)
  • 2
    • 0242574501 scopus 로고    scopus 로고
    • Sequence variation upstream of the precore AUG start codon of hepatitis B virus reduces HBe-antigen production
    • Ahn S, Kramvis A, Kawai S, Spangenberg H, Li J, Kimbi G, Kew M, Wands J, Tong S. 2003. Sequence variation upstream of the precore AUG start codon of hepatitis B virus reduces HBe-antigen production. Gastroenterology 125:1370-1378.
    • (2003) Gastroenterology , vol.125 , pp. 1370-1378
    • Ahn, S.1    Kramvis, A.2    Kawai, S.3    Spangenberg, H.4    Li, J.5    Kimbi, G.6    Kew, M.7    Wands, J.8    Tong, S.9
  • 4
    • 0030964116 scopus 로고    scopus 로고
    • Genotype F prevails in HBV infected patients of hispanic origin in Central America and may carry the precore stop mutant
    • Arauz-Ruiz P, Norder H, Visona KA, Magnius LO. 1997. Genotype F prevails in HBV infected patients of hispanic origin in Central America and may carry the precore stop mutant. J Med Virol 51: 305-312.
    • (1997) J Med Virol , vol.51 , pp. 305-312
    • Arauz-Ruiz, P.1    Norder, H.2    Visona, K.A.3    Magnius, L.O.4
  • 5
    • 0036330525 scopus 로고    scopus 로고
    • Genotype H: A new Amerindian genotype of hepatitis B virus revealed in Central America
    • Arauz-Ruiz P, Norder H, Robertson BH, Magnius LO. 2002. Genotype H: A new Amerindian genotype of hepatitis B virus revealed in Central America. J Gen Virol 83:2059-2073.
    • (2002) J Gen Virol , vol.83 , pp. 2059-2073
    • Arauz-Ruiz, P.1    Norder, H.2    Robertson, B.H.3    Magnius, L.O.4
  • 6
    • 13444269543 scopus 로고    scopus 로고
    • Haploview: Analysis and visualization of LD and haplotype maps
    • Barrett JC, Fry B, Maller J, Daly MJ. 2005. Haploview: Analysis and visualization of LD and haplotype maps. Bioinformatics 21:263-265.
    • (2005) Bioinformatics , vol.21 , pp. 263-265
    • Barrett, J.C.1    Fry, B.2    Maller, J.3    Daly, M.J.4
  • 7
    • 1642580790 scopus 로고    scopus 로고
    • Hepatitis B virus genotypes: Comparison of genotyping methods
    • Bartholomeusz A, Schaefer S. 2004. Hepatitis B virus genotypes: Comparison of genotyping methods. Rev Med Virol 14:3-16.
    • (2004) Rev Med Virol , vol.14 , pp. 3-16
    • Bartholomeusz, A.1    Schaefer, S.2
  • 8
    • 0030822839 scopus 로고    scopus 로고
    • Aunique segment of the hepatitis B virus group A genotype identified in isolates from South Africa
    • Bowyer SM, van Staden L, Kew MC, Sim JG. 1997. Aunique segment of the hepatitis B virus group A genotype identified in isolates from South Africa. J Gen Virol 78:1719-1729.
    • (1997) J Gen Virol , vol.78 , pp. 1719-1729
    • Bowyer, S.M.1    van Staden, L.2    Kew, M.C.3    Sim, J.G.4
  • 9
    • 36849040089 scopus 로고    scopus 로고
    • Felsenstein J. 1995. PHYLIP (phylogenecy inference package). Department of Genetics. Seattle, Washington: University of Washington, http://evolution. genetics.washington.edu/phylip/software.html.
    • Felsenstein J. 1995. PHYLIP (phylogenecy inference package). Department of Genetics. Seattle, Washington: University of Washington, http://evolution. genetics.washington.edu/phylip/software.html.
  • 10
    • 23044471836 scopus 로고    scopus 로고
    • Phylogeny of African complete genomes reveals a West African genotype A subtype of hepatitis B virus and relatedness between Somali and Asian Al sequences
    • Hannoun C, Soderstrom A, Norkrans G, Lindh M. 2005. Phylogeny of African complete genomes reveals a West African genotype A subtype of hepatitis B virus and relatedness between Somali and Asian Al sequences. J Gen Virol 86:2163-2167.
    • (2005) J Gen Virol , vol.86 , pp. 2163-2167
    • Hannoun, C.1    Soderstrom, A.2    Norkrans, G.3    Lindh, M.4
  • 13
    • 33645845650 scopus 로고    scopus 로고
    • Genomic characterization of HBV genotype F in Bolivia: Genotype F subgenotypes correlate with geographic distribution and T(1858) variant
    • Huy TT, Ushijima H, Sata T, Abe K. 2006. Genomic characterization of HBV genotype F in Bolivia: Genotype F subgenotypes correlate with geographic distribution and T(1858) variant. Arch Virol 151:589-597.
    • (2006) Arch Virol , vol.151 , pp. 589-597
    • Huy, T.T.1    Ushijima, H.2    Sata, T.3    Abe, K.4
  • 15
    • 2442697592 scopus 로고    scopus 로고
    • Distinctive sequence characteristics of subgenotype A1 isolates of hepatitis B virus from South Africa
    • Kimbi GC, Kramvis A, Kew MC. 2004. Distinctive sequence characteristics of subgenotype A1 isolates of hepatitis B virus from South Africa. J Gen Virol 85:1211-1220.
    • (2004) J Gen Virol , vol.85 , pp. 1211-1220
    • Kimbi, G.C.1    Kramvis, A.2    Kew, M.C.3
  • 16
    • 0031771112 scopus 로고    scopus 로고
    • Structure and function of the encapsidation signal of hepadnaviridae
    • Kramvis A, Kew MC. 1998. Structure and function of the encapsidation signal of hepadnaviridae. J Viral Hepat 5:357-367.
    • (1998) J Viral Hepat , vol.5 , pp. 357-367
    • Kramvis, A.1    Kew, M.C.2
  • 17
    • 0032731871 scopus 로고    scopus 로고
    • The core promoter of hepatitis B virus
    • Kramvis A, Kew MC. 1999. The core promoter of hepatitis B virus. J Viral Hepat 6:415-427.
    • (1999) J Viral Hepat , vol.6 , pp. 415-427
    • Kramvis, A.1    Kew, M.C.2
  • 18
    • 14744299915 scopus 로고    scopus 로고
    • Relationship of genotypes of hepatitis B virus to mutations, disease progression and response to antiviral therapy
    • Kramvis A, Kew MC. 2005. Relationship of genotypes of hepatitis B virus to mutations, disease progression and response to antiviral therapy. J Viral Hepat 12:456-464.
    • (2005) J Viral Hepat , vol.12 , pp. 456-464
    • Kramvis, A.1    Kew, M.C.2
  • 19
    • 34447622142 scopus 로고    scopus 로고
    • Molecular characterization of subgenotype A1 (subgroup Aa) of hepatitis B virus
    • Kramvis A, Kew MC. 2007. Molecular characterization of subgenotype A1 (subgroup Aa) of hepatitis B virus. Hepatol Res 37:S27-S32.
    • (2007) Hepatol Res , vol.37
    • Kramvis, A.1    Kew, M.C.2
  • 20
    • 0036208430 scopus 로고    scopus 로고
    • Analysis of the complete genome of subgroup A' hepatitis B virus isolates from South Africa
    • Kramvis A, Weitzmann L, Owiredu WK, Kew MC. 2002. Analysis of the complete genome of subgroup A' hepatitis B virus isolates from South Africa. J Gen Virol 83:835-839.
    • (2002) J Gen Virol , vol.83 , pp. 835-839
    • Kramvis, A.1    Weitzmann, L.2    Owiredu, W.K.3    Kew, M.C.4
  • 21
    • 23044436509 scopus 로고    scopus 로고
    • Hepatitis B virus genotypes
    • Kramvis A, Kew M, Francois G. 2005. Hepatitis B virus genotypes. Vaccine 23:2409-2423.
    • (2005) Vaccine , vol.23 , pp. 2409-2423
    • Kramvis, A.1    Kew, M.2    Francois, G.3
  • 23
    • 0027295758 scopus 로고
    • Hepatitis B virus genotype A rarely circulates as an HBe-minus mutant: Possible contribution of a single nucleotide in the precore region
    • Li JS, Tong SP, Wen YM, Vitvitski L, Zhang Q, Trepo C. 1993. Hepatitis B virus genotype A rarely circulates as an HBe-minus mutant: Possible contribution of a single nucleotide in the precore region. J Virol 67:5402-5410.
    • (1993) J Virol , vol.67 , pp. 5402-5410
    • Li, J.S.1    Tong, S.P.2    Wen, Y.M.3    Vitvitski, L.4    Zhang, Q.5    Trepo, C.6
  • 24
    • 0030995314 scopus 로고    scopus 로고
    • Genotypes, nt 1858 variants, and geographic origin of hepatitis B virus - Large-scale analysis using a new genotyping method
    • Lindh M, Andersson AS, Gusdal A. 1997. Genotypes, nt 1858 variants, and geographic origin of hepatitis B virus - Large-scale analysis using a new genotyping method. J Infect Dis 175:1285-1293.
    • (1997) J Infect Dis , vol.175 , pp. 1285-1293
    • Lindh, M.1    Andersson, A.S.2    Gusdal, A.3
  • 25
    • 28944442419 scopus 로고    scopus 로고
    • Therapeutic implications of hepatitis B virus genotypes
    • Liu CJ, Kao JH, Chen DS. 2005. Therapeutic implications of hepatitis B virus genotypes. Liver Int 25:1097-1107.
    • (2005) Liver Int , vol.25 , pp. 1097-1107
    • Liu, C.J.1    Kao, J.H.2    Chen, D.S.3
  • 26
    • 0028222146 scopus 로고
    • Mutations in the pre-core region of hepatitis B virus serve to enhance the stability of the secondary structure of the pre-genome encapsidation signal
    • Lok AS, Akarca U, Greene S. 1994. Mutations in the pre-core region of hepatitis B virus serve to enhance the stability of the secondary structure of the pre-genome encapsidation signal. Proc Natl Acad Sci USA 91:4077-4081.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 4077-4081
    • Lok, A.S.1    Akarca, U.2    Greene, S.3
  • 27
    • 0033998609 scopus 로고    scopus 로고
    • Detection of hepatitis B virus infection in wild-born chimpanzees (Pan troglodytes verus): Phylogenetic relationships with human and other primate genotypes
    • MacDonald DM, Holmes EC, Lewis JC, Simmonds P. 2000. Detection of hepatitis B virus infection in wild-born chimpanzees (Pan troglodytes verus): Phylogenetic relationships with human and other primate genotypes. J Virol 74:4253-4257.
    • (2000) J Virol , vol.74 , pp. 4253-4257
    • MacDonald, D.M.1    Holmes, E.C.2    Lewis, J.C.3    Simmonds, P.4
  • 28
    • 0028877043 scopus 로고
    • Subtypes, genotypes and molecular epidemiology of the hepatitis B virus as reflected by sequence variability of the S-gene
    • Magnius LO, Norder H. 1995. Subtypes, genotypes and molecular epidemiology of the hepatitis B virus as reflected by sequence variability of the S-gene. Intervirology 38:24-34.
    • (1995) Intervirology , vol.38 , pp. 24-34
    • Magnius, L.O.1    Norder, H.2
  • 30
    • 0034808767 scopus 로고    scopus 로고
    • Phylogenetic analysis of the hepatitis B virus (HBV) genotype F including Argentine isolates
    • Mbayed VA, Barbini L, Lopez JL, Campos RH. 2001. Phylogenetic analysis of the hepatitis B virus (HBV) genotype F including Argentine isolates. Arch Virol 146:1803-1810.
    • (2001) Arch Virol , vol.146 , pp. 1803-1810
    • Mbayed, V.A.1    Barbini, L.2    Lopez, J.L.3    Campos, R.H.4
  • 32
    • 0348047592 scopus 로고    scopus 로고
    • Classifying hepatitis B virus genotypes
    • Miyakawa Y, Mizokami M. 2003. Classifying hepatitis B virus genotypes. Intervirology 46:329-338.
    • (2003) Intervirology , vol.46 , pp. 329-338
    • Miyakawa, Y.1    Mizokami, M.2
  • 34
    • 33744811659 scopus 로고    scopus 로고
    • Genotyping Hepatitis B virus from whole- and sub-genomic fragments using position-specific scoring matrices in HBV STAR
    • Myers R, Clark C, Khan A, Kellam P, Tedder R. 2006. Genotyping Hepatitis B virus from whole- and sub-genomic fragments using position-specific scoring matrices in HBV STAR. J Gen Virol 87: 1459-1464.
    • (2006) J Gen Virol , vol.87 , pp. 1459-1464
    • Myers, R.1    Clark, C.2    Khan, A.3    Kellam, P.4    Tedder, R.5
  • 36
    • 0027251125 scopus 로고
    • Identification of a new hepatitis B virus (HBV) genotype from Brazil that expresses HBV surface antigen subtype adw4
    • Naumann H, Schaefer S, Yoshida CF, Gaspar AM, Repp R, Gerlich WH. 1993. Identification of a new hepatitis B virus (HBV) genotype from Brazil that expresses HBV surface antigen subtype adw4. J Gen Virol 74:1627-1632.
    • (1993) J Gen Virol , vol.74 , pp. 1627-1632
    • Naumann, H.1    Schaefer, S.2    Yoshida, C.F.3    Gaspar, A.M.4    Repp, R.5    Gerlich, W.H.6
  • 37
    • 0005981811 scopus 로고    scopus 로고
    • Analysis and visualization of genetic variation
    • Nicholas KB, Nicholas HB Jr. 1997. GeneDoc: Analysis and visualization of genetic variation, http://www.psc.edu/biomed/genedoc.
    • (1997) GeneDoc
    • Nicholas, K.B.1    Nicholas Jr., H.B.2
  • 38
    • 0027049665 scopus 로고
    • Molecular basis of hepatitis B virus serotype variations within the four major subtypes
    • Norder H, Courouce AM, Magnius LO. 1992a. Molecular basis of hepatitis B virus serotype variations within the four major subtypes. J Gen Virol 73:3141-3145.
    • (1992) J Gen Virol , vol.73 , pp. 3141-3145
    • Norder, H.1    Courouce, A.M.2    Magnius, L.O.3
  • 39
    • 0026536025 scopus 로고
    • Comparison of the amino acid sequences of nine different serotypes of hepatitis B surface antigen and genomic classification of the corresponding hepatitis B virus strains
    • Norder H, Hammas B, Lofdahl S, Courouce AM, Magnius LO. 1992b. Comparison of the amino acid sequences of nine different serotypes of hepatitis B surface antigen and genomic classification of the corresponding hepatitis B virus strains. J Gen Virol 73:1201-1208.
    • (1992) J Gen Virol , vol.73 , pp. 1201-1208
    • Norder, H.1    Hammas, B.2    Lofdahl, S.3    Courouce, A.M.4    Magnius, L.O.5
  • 40
    • 0028301224 scopus 로고
    • Complete genomes, phylogenetic relatedness, and structural proteins of six strains of the hepatitis B virus, four of which represent two new genotypes
    • Norder H, Courouce AM, Magnius LO. 1994. Complete genomes, phylogenetic relatedness, and structural proteins of six strains of the hepatitis B virus, four of which represent two new genotypes. Virology 198:489-503.
    • (1994) Virology , vol.198 , pp. 489-503
    • Norder, H.1    Courouce, A.M.2    Magnius, L.O.3
  • 41
    • 0042668509 scopus 로고    scopus 로고
    • The T(1858) variant predisposing to the precore stop mutation correlates with one of two major genotype F hepatitis B virus clades
    • Norder H, Arauz-Ruiz P, Blitz L, Pujol FH, Echevarria JM, Magnius LO. 2003. The T(1858) variant predisposing to the precore stop mutation correlates with one of two major genotype F hepatitis B virus clades. J Gen Virol 84:2083-2087.
    • (2003) J Gen Virol , vol.84 , pp. 2083-2087
    • Norder, H.1    Arauz-Ruiz, P.2    Blitz, L.3    Pujol, F.H.4    Echevarria, J.M.5    Magnius, L.O.6
  • 43
    • 33646147584 scopus 로고    scopus 로고
    • Phylogenetic analysis of the precore/core gene of hepatitis B virus genotypes E and A in West Africa: New subtypes, mixed infections and recombinations
    • Olinger CM, Venard V, Njayou M, Oyefolu AO, Maiga I, Kemp AJ, Omilabu SA, Ie Faou A, Muller CP. 2006. Phylogenetic analysis of the precore/core gene of hepatitis B virus genotypes E and A in West Africa: New subtypes, mixed infections and recombinations. J Gen Virol 87:1163-1173.
    • (2006) J Gen Virol , vol.87 , pp. 1163-1173
    • Olinger, C.M.1    Venard, V.2    Njayou, M.3    Oyefolu, A.O.4    Maiga, I.5    Kemp, A.J.6    Omilabu, S.A.7    Ie Faou, A.8    Muller, C.P.9
  • 44
    • 0023388549 scopus 로고
    • Genomic heterogeneity of hepatitis B virus in a 54-year-old woman who contracted the infection through materno-fetal transmission
    • Okamoto H, Imai M, Kametani M, Nakamura T, Mayumi M. 1987. Genomic heterogeneity of hepatitis B virus in a 54-year-old woman who contracted the infection through materno-fetal transmission. Jpn J Exp Med 57:231-236.
    • (1987) Jpn J Exp Med , vol.57 , pp. 231-236
    • Okamoto, H.1    Imai, M.2    Kametani, M.3    Nakamura, T.4    Mayumi, M.5
  • 46
    • 33750332094 scopus 로고    scopus 로고
    • Molecular evolution of hepatitis B virus over 25 years
    • Osiowy C, Giles E, Tanaka Y, Mizokami M, Minuk GY. 2006. Molecular evolution of hepatitis B virus over 25 years. J Virol 80:10307-10314.
    • (2006) J Virol , vol.80 , pp. 10307-10314
    • Osiowy, C.1    Giles, E.2    Tanaka, Y.3    Mizokami, M.4    Minuk, G.Y.5
  • 47
    • 0030203863 scopus 로고    scopus 로고
    • TREEVIEW: An application to display phylogenetic trees on personal computers
    • Page R. 1996. TREEVIEW: An application to display phylogenetic trees on personal computers. Comput Appl Biosci 12:357-358 http://taxonomy.zoology.gla. ac.uk/rod/treeview.html.
    • (1996) Comput Appl Biosci , vol.12 , pp. 357-358
    • Page, R.1
  • 49
    • 29744442930 scopus 로고    scopus 로고
    • Recombination in the genesis and evolution of hepatitis B virus genotypes
    • Simmonds P, Midgley S. 2005. Recombination in the genesis and evolution of hepatitis B virus genotypes. J Virol 79:15467-15476.
    • (2005) J Virol , vol.79 , pp. 15467-15476
    • Simmonds, P.1    Midgley, S.2
  • 50
    • 0003633894 scopus 로고
    • Ames, Iowa: Iowa State University Press
    • Snedecor G, Cochran W. 1967. Statistical methods. Ames, Iowa: Iowa State University Press. 228-257 pp.
    • (1967) Statistical methods , pp. 228-257
    • Snedecor, G.1    Cochran, W.2
  • 52
    • 0035063443 scopus 로고    scopus 로고
    • A novel variant genotype C of hepatitis B virus identified in isolates from Australian Aborigines: Complete genome sequence and phylogenetic relatedness
    • Sugauchi F, Mizokami M, Orito E, Ohno T, Kato H, Suzuki S, Kimura Y, Ueda R, Butterworth LA, Cooksley WG. 2001. A novel variant genotype C of hepatitis B virus identified in isolates from Australian Aborigines: Complete genome sequence and phylogenetic relatedness. J Gen Virol 82:883-892.
    • (2001) J Gen Virol , vol.82 , pp. 883-892
    • Sugauchi, F.1    Mizokami, M.2    Orito, E.3    Ohno, T.4    Kato, H.5    Suzuki, S.6    Kimura, Y.7    Ueda, R.8    Butterworth, L.A.9    Cooksley, W.G.10
  • 55
  • 57
    • 16844364045 scopus 로고    scopus 로고
    • A new intertype recombinant between genotypes C and D of hepatitis B virus identified in China
    • Wang Z, Liu Z, Zeng G, Wen S, Qi Y, Ma S, Naoumov NV, Hou J. 2005. A new intertype recombinant between genotypes C and D of hepatitis B virus identified in China. J Gen Virol 86:985-990.
    • (2005) J Gen Virol , vol.86 , pp. 985-990
    • Wang, Z.1    Liu, Z.2    Zeng, G.3    Wen, S.4    Qi, Y.5    Ma, S.6    Naoumov, N.V.7    Hou, J.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.