Classifying genotype F of hepatitis B virus into F1 and F2 subtypes

World Journal of Gastroenterology

Volumn 11, Issue 40, 2005, Pages 6295-6304

  Kato, Hideaki ^a   Fujiwara, Kei ^a   Gish, Robert G ^b   Sakugawa, Hiroshi ^c   Yoshizawa, Hiroshi ^d   Sugauchi, Fuminaka ^a   Orito, Etsuro ^a   Ueda, Ryuzo ^a   Tanaka, Yasuhito ^a   Kato, Takanobu ^a   Miyakawa, Yuzo ^e   Mizokami, Masashi ^a  

^a NAGOYA CITY UNIVERSITY GRADUATE SCHOOL OF MEDICAL SCIENCES   (Japan)

^b CALIFORNIA PACIFIC MEDICAL CENTER   (United States)

^c UNIVERSITY OF THE RYUKYUS   (Japan)

^d HIROSHIMA UNIVERSITY   (Japan)

^e Miyakawa Memorial Research Foundation   (Japan)

Author keywords

Genotypes; Hepatitis B virus; Phylogenetic analysis; Subtypes

Indexed keywords

ACUTE HEPATITIS; ADULT; ARTICLE; CHRONIC HEPATITIS; ENZYME LINKED IMMUNOSORBENT ASSAY; FEMALE; GENE SEQUENCE; GENETIC DISTANCE; GENETIC VARIABILITY; GENOME ANALYSIS; GENOTYPE; HEPATITIS B; HEPATITIS B VIRUS; HUMAN; JAPAN; LIVER CIRRHOSIS; MALE; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PANAMA; PHYLOGENETIC TREE; PHYLOGENY; POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS; STRAIN DIFFERENCE; UNITED STATES; VENEZUELA; VIRUS CLASSIFICATION; VIRUS ISOLATION; VIRUS STRAIN;

EID: 21444434421     PISSN: 10079327     EISSN: None     Source Type: Journal    
DOI: 10.3748/wjg.v11.i40.6295     Document Type: Article

References (29)

1. Okamoto H, Tsuda F, Sakugawa H, Sastrosoewignjo RI, Imai M, Miyakawa Y, Mayumi M. Typing hepatitis B virus by homology in nucleotide sequence, comparison of surface antigen subtypes. J Gen Virol 1988; 69: 2575-2583
2. Norder H, Courouce AM, Magnius LO. Complete genomes, phylogenetic relatedness, and structural proteins of six strains of the hepatitis B virus, four of which represent two new genotypes. Virology 1994; 198: 489-503
3. Stuyver L, De Gendt S, Van Geyt C, Zoulim F, Fried M, Schinazi RF, Rossau R. A new genotype of hepatitis B virus: complete genome and phylogenetic relatedness. J Gen Virol 2000; 81: 67-74
4. Arauz-Ruiz P, Norder H, Robertson BH, Magnius LO. Genotype H, a new Amerindian genotype of hepatitis B virus revealed in Central America. J Gen Virol 2002; 83: 2059-2073
5. Usuda S, Okamoto H, Iwanari H, Baba K, Tsuda F, Miyakawa Y, Mayumi M. Serological detection of hepatitis B virus genotypes by ELISA with monoclonal antibodies to type-specific epitopes in the preS2-region product. J Virol Methods 1999; 80: 97-112
6. Usuda S, Okamoto H, Tanaka T, Kidd-Ljunggren K, Holland PV, Miyakawa Y, Mayumi M. Differentiation of hepatitis B vir-us genotypes D and E by ELISA using monoclonal antibodies to epitopes on the preS2-region product. J Virol Methods 2000; 87: 81-89
7. Kato H, Orito E, Sugauchi F, Ueda R, Gish RG, Usuda S, Miyakawa Y, Mizokami M. Determination of hepatitis B virus genotype G by polymerase chain reaction with hemi-nested primers. J Virol Methods 2001; 98: 153-159
8. Gojobori T, Ishii K, Nei, M. Estimation of average number of nucleotide substitutions when the rate of substitution varies. J Mol Evol 1982; 28: 414-423
9. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4: 406-425
10. Felsenstein J. Confidence limits on phylogenesis, an approach using the bootstrap. Evolution 1985; 39: 783-791
11. Ina Y. ODEN: a program package for molecular evolutionary analysis and database search of DNA and amino acid sequences. Comput Appl Biosci 1994; 10: 11-12
12. Naumann H, Schaefer S, Yoshida CF, Gaspar AM, Repp R, Gerlich WH: Identification of a new hepatitis B virus (HBV) genotype from Brazil that expresses HBV surface antigen subtype adw4. J Gen Virol 1993; 74: 1627-1632
13. Nakano T, Lu L, Hu X, Mizokami M, Orito E, Shapiro C, Hadler S, Robertson B: Characterization of hepatitis B virus genotypes among Yucpa Indians in Venezuela. I Gen Virol 2001; 82: 359-365
14. Okamoto H, Imai M, Tsuda F, Tanaka T, Miyakawa Y, Mayumi M: Point mutation in the S gene of hepatitis B virus for a d/y or w/r subtypic change in two blood donors carrying a surface antigen of compound subtype adyr or adwr. J Virol 1987; 61: 3030-3034
15. Arauz-Ruiz P, Norder H, Visona KA, Magnius LO: Genotype F prevails in HBV infected patients of hispanic origin in Central America and may carry the precore stop mutant. J Med Virol 1997; 51: 305-312
16. Arauz-Ruiz P, Norder H, Visona KA, Magnius LO: Molecular epidemiology of hepatitis B virus in Central America reflected in the genetic variability of the small S gene. J Infect Dis 1997; 176: 851-858
17. Blitz L, Pujol FH, Swenson PD, Porto L, Atencio R, Araujo M, Costa L, Monsalve DC, Torres JR, Fields HA, Lambert S, Van Geyt C, Norder H, Magnius LO, Echevarria JM, Stuyver L: Antigenic diversity of hepatitis B virus strains of genotype F in Amerindians and other population groups from Venezuela. J Clin Microbiol 19981; 36: 648-651
18. Mbayed VA, Lopez JL, Telenta PF, Palacios G, Badia 1, Ferro A, Galoppo C, Campos R: Distribution of hepatitis B virus genotypes in two different pediatric populations from Argentina. J Clin Microbiol 1998; 36: 3362-3365
19. Mbayed VA, Barbini L, Lopez JL, Campos RH: Phylogenetic analysis of the hepatitis B virus (HBV) genotype F including Argentine isolates. Arch Virol 2001; 146: 1803-1810
20. Robertson BH, Margolis HS. Primate hepatitis B viruses-genetic diversity, geography and evolution. Rev Med Virol 2002, 12: 133-141
21. Simmonds P, Holmes EC, Cha TA, Chan SW, McOmish F, Irvine B, Beall E, Yap PL, Kolberg J, Urdea MS. Classification of hepatitis C virus into six major genotypes and a series of subtypes by phylogenetic analysis of the NS-5 region. J Gen Virol 1993; 74: 2391-2399
22. Bowyer SM, Sim JG. Relationships within and between genotypes of hepatitis B virus at points across the genome, foot-prints of recombination in certain isolates. J Gen Virol 2000; 81: 379-392
23. Mayerat C, Mantegani A, Frei C. Does hepatitis B virus (HBV) genotype influence the clinical outcome of HBV infection? J Viral Hepatitis 1999; 6: 299-304
24. Kao JH, Chen M, PJ, Lai Y, Chen DS. Hepatitis B genotypes correlate with clinical outcomes in patients with chronic hepatitis B. Gastroenterology 2000; 118: 554-559
25. Orito E, Mizokami M, Sakugawa H, Michitaka K, Ishikawa K, Ichida T, Okanoue T, Yotsuyanagi H, Iino S. A case-control study for clinical and molecular biological differences between hepatitis B viruses of genotypes B and C. Japan HBV Genotype Research Group. Hepatology 2001; 33: 218-223
26. Miyakawa Y, Mizokami M. Classifying hepatitis B virus genotypes. Intervirology 2003; 46: 329-38
27. Sugauchi F, Orito E, Ichida T, Kato H, Sakugawa H, Kakumu S, Ishida T, Chutaputti A, Lai CL, Gish RG, Ueda R, Miyakawa Y, Mizokami M. Epidemiologic and virologic characteristics of hepatitis B virus genotype B having the recombination with genotype C. Gastroenterology 2003; 124: 925-932
28. Sugauchi F, Orito E, Ichida T, Kato H, Sakugawa H, Kakumu S, Ishida T, Chutaputti A, Lai CL, Ueda R, Miyakawa Y, Mizokami M. Hepatitis B virus of genotype B with or without recombination with genotype C over the precore region plus the core gene. J Virol 2002; 76: 5985-5992
29. Akuta N, Suzuki F, Kobayashi M, Tsubota A, Suzuki Y, Hosaka T, Someya T, Kobayashi M, Saitoh S, Arase Y, Ikeda K, Kumada H. The influence of hepatitis B virus genotype on the development of lamivudine resistance during long-term treatment. J Hepatol 2003; 38: 315-321