-
1
-
-
0025910229
-
Molecular biology of prion diseases
-
Prusiner, S. B. 1991. Molecular biology of prion diseases. Science. 252:1515-1522.
-
(1991)
Science
, vol.252
, pp. 1515-1522
-
-
Prusiner, S.B.1
-
2
-
-
0028339962
-
Proposed three-dimensional structure for the cellular prion protein
-
Huang, Z., J. Gabriel, M. A. Baldwin, R. J. Fletterick, S. B. Prusiner, and F. E. Cohen. 1994. Proposed three-dimensional structure for the cellular prion protein. Proc. Natl. Acad. Sci. USA. 91:7139-7143.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 7139-7143
-
-
Huang, Z.1
Gabriel, J.2
Baldwin, M.A.3
Fletterick, R.J.4
Prusiner, S.B.5
Cohen, F.E.6
-
3
-
-
0030836511
-
NMR characterization of the full-length recombinant murine prion protein, mPrP(23-231)
-
Riek, R., S. Hornemann, G. Wider, R. Glockshuber, and K. Wüthrich. 1997. NMR characterization of the full-length recombinant murine prion protein, mPrP(23-231). FEBS Lett. 413:282-288.
-
(1997)
FEBS Lett
, vol.413
, pp. 282-288
-
-
Riek, R.1
Hornemann, S.2
Wider, G.3
Glockshuber, R.4
Wüthrich, K.5
-
4
-
-
0031456947
-
Structure of the recombinant full-length hamster prion protein PrP(29-231): The N terminus is highly flexible
-
Donne, D. G., J. H. Viles, D. Groth, I. Mehlhorn, L. J. Thomas, F. E. Cohen, S. B. Prusiner, P. E. Wright, and H. J. Dyson. 1997. Structure of the recombinant full-length hamster prion protein PrP(29-231): the N terminus is highly flexible. Proc. Natl. Acad. Sci. USA. 94:13452-13457.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 13452-13457
-
-
Donne, D.G.1
Viles, J.H.2
Groth, D.3
Mehlhorn, I.4
Thomas, L.J.5
Cohen, F.E.6
Prusiner, S.B.7
Wright, P.E.8
Dyson, H.J.9
-
5
-
-
0027332116
-
Conversion of α-helices into β-sheets features in the formation of the scrapie prion proteins
-
Pan, K., M. Baldwin, J. Nguyen, M. Gasset, A. Serban, D. Groth, I. Mehlhorn, Z. Huang, R. J. Fletterick, F. E. Cohen, and S. B. Prusiner. 1993. Conversion of α-helices into β-sheets features in the formation of the scrapie prion proteins. Proc. Natl. Acad. Sci. USA. 90:10962-10966.
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 10962-10966
-
-
Pan, K.1
Baldwin, M.2
Nguyen, J.3
Gasset, M.4
Serban, A.5
Groth, D.6
Mehlhorn, I.7
Huang, Z.8
Fletterick, R.J.9
Cohen, F.E.10
Prusiner, S.B.11
-
6
-
-
0020321767
-
Novel proteinaceous infectious particles cause scrapie
-
Prusiner, S. B. 1982. Novel proteinaceous infectious particles cause scrapie. Science. 216:136-144.
-
(1982)
Science
, vol.216
, pp. 136-144
-
-
Prusiner, S.B.1
-
7
-
-
0037225234
-
Molecular evolution of the mammalian prion protein
-
van Rheede, T., M. M. W. Smolenaars, O. Madsen, and W. W. de Jong. 2003. Molecular evolution of the mammalian prion protein. Mol. Biol. Evol. 20:111-121.
-
(2003)
Mol. Biol. Evol
, vol.20
, pp. 111-121
-
-
van Rheede, T.1
Smolenaars, M.M.W.2
Madsen, O.3
de Jong, W.W.4
-
8
-
-
0028883341
-
Copper binding to the N-terminal tandem repeat regions of mammalian and avian prion protein
-
Hornshaw, M. P., J. R. McDermott, and J. M. Candy. 1995. Copper binding to the N-terminal tandem repeat regions of mammalian and avian prion protein. Biochem. Biophys. Res. Commun. 207:621-629.
-
(1995)
Biochem. Biophys. Res. Commun
, vol.207
, pp. 621-629
-
-
Hornshaw, M.P.1
McDermott, J.R.2
Candy, J.M.3
-
9
-
-
0037965529
-
Prion protein selectively binds copper(II) ions
-
Stöckel, J., J. Safar, A. C. Wallace, F. E. Cohen, and S. B. Prusiner. 1998. Prion protein selectively binds copper(II) ions. Biochemistry. 37:7185-7193.
-
(1998)
Biochemistry
, vol.37
, pp. 7185-7193
-
-
Stöckel, J.1
Safar, J.2
Wallace, A.C.3
Cohen, F.E.4
Prusiner, S.B.5
-
10
-
-
0033515029
-
Copper binding to the prion protein: Structural implications for four identical cooperative binding sites
-
Viles, J. H., F. E. Cohen, S. B. Prusiner, D. B. Goodin, P. E. Wright, and H. J. Dyson. 1999. Copper binding to the prion protein: Structural implications for four identical cooperative binding sites. Proc. Natl. Acad. Sci. USA. 96:2042-2047.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 2042-2047
-
-
Viles, J.H.1
Cohen, F.E.2
Prusiner, S.B.3
Goodin, D.B.4
Wright, P.E.5
Dyson, H.J.6
-
11
-
-
0035907363
-
Prion protein binds copper within the physiological concentration range
-
Kramer, M. L., H. D. Kratzin, B. Schmidt, A. Römer, I. Windl, S. Leimann, S. Hornemann, and H. Kretzchmar. 2001. Prion protein binds copper within the physiological concentration range. J. Biol. Chem. 276:16711-16719.
-
(2001)
J. Biol. Chem
, vol.276
, pp. 16711-16719
-
-
Kramer, M.L.1
Kratzin, H.D.2
Schmidt, B.3
Römer, A.4
Windl, I.5
Leimann, S.6
Hornemann, S.7
Kretzchmar, H.8
-
12
-
-
0023748491
-
Evidence for release of copper in the brain: Depolarization-induced release of newly taken-up 67 copper
-
Hartter, D. E., and A. Barnea. 1988. Evidence for release of copper in the brain: depolarization-induced release of newly taken-up 67 copper. Synapse. 2:412-415.
-
(1988)
Synapse
, vol.2
, pp. 412-415
-
-
Hartter, D.E.1
Barnea, A.2
-
13
-
-
0041302374
-
Cellular prion protein function in copper homeostasis and redox signaling at the synapse
-
Vassallo, N., and J. Herms. 2003. Cellular prion protein function in copper homeostasis and redox signaling at the synapse. J. Neurochem. 86:538-544.
-
(2003)
J. Neurochem
, vol.86
, pp. 538-544
-
-
Vassallo, N.1
Herms, J.2
-
14
-
-
0033617578
-
Undetectable intracellular free copper: The requirement of a copper chaperone for superoxide dismutase
-
Rae, T. D., P. J. Schmidt, R. A. Pufhal, V. C. Culotta, and T. V. O'Halloran. 1999. Undetectable intracellular free copper: the requirement of a copper chaperone for superoxide dismutase. Science. 284:805-808.
-
(1999)
Science
, vol.284
, pp. 805-808
-
-
Rae, T.D.1
Schmidt, P.J.2
Pufhal, R.A.3
Culotta, V.C.4
O'Halloran, T.V.5
-
15
-
-
0021351203
-
Oxygen toxicity, oxygen radicals, transition metals and disease
-
Halliwell, B., and J. M. C. Gutteridge. 1984. Oxygen toxicity, oxygen radicals, transition metals and disease. Biochem. J. 219:1-4.
-
(1984)
Biochem. J
, vol.219
, pp. 1-4
-
-
Halliwell, B.1
Gutteridge, J.M.C.2
-
16
-
-
0000162325
-
The catalytic decomposition of hydrogen peroxide by iron salts
-
Haber, F., and J. Weiss. 1934. The catalytic decomposition of hydrogen peroxide by iron salts. Proc. R. Soc. Lond. A. 147:332-351.
-
(1934)
Proc. R. Soc. Lond. A
, vol.147
, pp. 332-351
-
-
Haber, F.1
Weiss, J.2
-
17
-
-
0013343497
-
The nature of the primary oxidants in oxidations mediated by metal ions
-
Systems. T. E. King, H. S. Mason, and M. Morrison, editors. Pergamon Press, Oxford, UK
-
Walling, C. 1982. The nature of the primary oxidants in oxidations mediated by metal ions. In Oxidases and Related Redox Systems. T. E. King, H. S. Mason, and M. Morrison, editors. Pergamon Press, Oxford, UK. 85-97.
-
(1982)
Oxidases and Related Redox
, pp. 85-97
-
-
Walling, C.1
-
18
-
-
0034654304
-
Consequences of manganese replacement of copper for prion protein function and proteinase resistance
-
Brown, D. R., F. Hafiz, L. L. Glasssmith, B. Wong, I. M. Jones, C. Clive, and S. Haswell. 2000. Consequences of manganese replacement of copper for prion protein function and proteinase resistance. EMBO J. 19:1180-1186.
-
(2000)
EMBO J
, vol.19
, pp. 1180-1186
-
-
Brown, D.R.1
Hafiz, F.2
Glasssmith, L.L.3
Wong, B.4
Jones, I.M.5
Clive, C.6
Haswell, S.7
-
19
-
-
4544335297
-
Cellular prion protein acquires resistance to proteolytic degradation following copper ion binding
-
Kuczius, T., A. Buschmann, W. Zhang, H. Karch, K. Becker, G. Peters, and M. H. Groschup. 2004. Cellular prion protein acquires resistance to proteolytic degradation following copper ion binding. Biol. Chem. 385:739-747.
-
(2004)
Biol. Chem
, vol.385
, pp. 739-747
-
-
Kuczius, T.1
Buschmann, A.2
Zhang, W.3
Karch, H.4
Becker, K.5
Peters, G.6
Groschup, M.H.7
-
20
-
-
0345306739
-
Copper chelation delays the onset of prion disease
-
Sigurdsson, E. M., D. R. Brown, M. A. Alim, H. Scholtzova, R. Carp, H. C. Meeker, F. Prelli, B. Frangione, and T. Wisniewski. 2003. Copper chelation delays the onset of prion disease. J. Biol. Chem. 278:46199-46202.
-
(2003)
J. Biol. Chem
, vol.278
, pp. 46199-46202
-
-
Sigurdsson, E.M.1
Brown, D.R.2
Alim, M.A.3
Scholtzova, H.4
Carp, R.5
Meeker, H.C.6
Prelli, F.7
Frangione, B.8
Wisniewski, T.9
-
21
-
-
0022005315
-
A cellular gene encodes scrapie PrP 27-30 protein
-
Oesch, B., D. Westaway, M. Wä;lchli, M. P. McKinley, S. B. Kent, R. Aebersold, R. A. Barry, P. Tempst, D. B. Teplow, L. E. Hood, S. B. Prusiner, and C. Weissmann. 1985. A cellular gene encodes scrapie PrP 27-30 protein. Cell. 40:735-746.
-
(1985)
Cell
, vol.40
, pp. 735-746
-
-
Oesch, B.1
Westaway, D.2
Wä, M.3
lchli4
McKinley, M.P.5
Kent, S.B.6
Aebersold, R.7
Barry, R.A.8
Tempst, P.9
Teplow, D.B.10
Hood, L.E.11
Prusiner, S.B.12
Weissmann, C.13
-
22
-
-
0024474822
-
Diagnosis of Gerstmann-Sträussler syndrome in familial dementia with prion protein gene analysis
-
Collinge, J., A. E. Harding, F. Owen, M. Poulter, R. Lofthouse, A. M. Boughey, T. Shah, and T. Crow. 1989. Diagnosis of Gerstmann-Sträussler syndrome in familial dementia with prion protein gene analysis. Lancet. ii:15-17.
-
(1989)
Lancet
, vol.2
, pp. 15-17
-
-
Collinge, J.1
Harding, A.E.2
Owen, F.3
Poulter, M.4
Lofthouse, R.5
Boughey, A.M.6
Shah, T.7
Crow, T.8
-
23
-
-
0024530897
-
Insertion in prion protein gene in familial Creutzfeldt-Jakob disease
-
Owen, F., M. Poulter, R. Lofthouse, J. Collinge, T. J. Crow, D. Risby, H. F. Baker, R. M. Ridley, K. Hsiao, and S. B. Prusiner. 1989. Insertion in prion protein gene in familial Creutzfeldt-Jakob disease. Lancet. i:51-52.
-
(1989)
Lancet
, vol.1
, pp. 51-52
-
-
Owen, F.1
Poulter, M.2
Lofthouse, R.3
Collinge, J.4
Crow, T.J.5
Risby, D.6
Baker, H.F.7
Ridley, R.M.8
Hsiao, K.9
Prusiner, S.B.10
-
24
-
-
0025885702
-
Transmissible familial Creutzfeldt-Jakob disease associated with five, seven, and eight extra octapeptide coding repeats in the PRNP gene
-
Goldfarb, L. G., P. Brown, W. R. McCombie, D. Goldgaber, G. D. Swergold, P. R. Wills, L. Cervenakova, H. Baron, C. J. Gibbs, Jr., and D. C. Gajdusek. 1991. Transmissible familial Creutzfeldt-Jakob disease associated with five, seven, and eight extra octapeptide coding repeats in the PRNP gene. Proc. Natl. Acad. Sci. USA. 88:10926-10930.
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 10926-10930
-
-
Goldfarb, L.G.1
Brown, P.2
McCombie, W.R.3
Goldgaber, D.4
Swergold, G.D.5
Wills, P.R.6
Cervenakova, L.7
Baron, H.8
Gibbs Jr., C.J.9
Gajdusek, D.C.10
-
25
-
-
0034633704
-
A new mutation in the prion protein gene: A patient with dementia and white matter changes
-
van Harten, B., W. A. van Gool, I. M. van Langen, J. M. Deekman, P. H. S. Meijerink, and H. C. Weinstein. 2000. A new mutation in the prion protein gene: a patient with dementia and white matter changes. Neurology. 55:1055-1057.
-
(2000)
Neurology
, vol.55
, pp. 1055-1057
-
-
van Harten, B.1
van Gool, W.A.2
van Langen, I.M.3
Deekman, J.M.4
Meijerink, P.H.S.5
Weinstein, H.C.6
-
26
-
-
0033695126
-
Prion protein devoid of the octapeptide repeat region restores susceptibility to scrapie in PrP knockout mice
-
Flechsig, E., D. Shmerling, I. Hegyi, A. J. Raeber, M. Fischer, A. Cozzio, C. von Mering, A. Aguzzi, and C. Weissmann. 2000. Prion protein devoid of the octapeptide repeat region restores susceptibility to scrapie in PrP knockout mice. Neuron. 27:399-408.
-
(2000)
Neuron
, vol.27
, pp. 399-408
-
-
Flechsig, E.1
Shmerling, D.2
Hegyi, I.3
Raeber, A.J.4
Fischer, M.5
Cozzio, A.6
von Mering, C.7
Aguzzi, A.8
Weissmann, C.9
-
27
-
-
0037083888
-
Metal imbalance and compromised antioxidant function are early changes in prion disease
-
Thackray, A. M., R. Knight, S. J. Haswell, R. Bujdoso, and D. R. Brown. 2002. Metal imbalance and compromised antioxidant function are early changes in prion disease. Biochem. J. 362:253-258.
-
(2002)
Biochem. J
, vol.362
, pp. 253-258
-
-
Thackray, A.M.1
Knight, R.2
Haswell, S.J.3
Bujdoso, R.4
Brown, D.R.5
-
28
-
-
0035912772
-
Copper-catalyzed oxidation of the recombinant SHa(29-231) prion protein
-
Requena, J. R., D. Groth, G. Legname, E. R. Stadtman, S. B. Prusiner, and R. L. Levine. 2001. Copper-catalyzed oxidation of the recombinant SHa(29-231) prion protein. Proc. Natl. Acad. Sci. USA. 98:7170-7175.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 7170-7175
-
-
Requena, J.R.1
Groth, D.2
Legname, G.3
Stadtman, E.R.4
Prusiner, S.B.5
Levine, R.L.6
-
29
-
-
0032507975
-
Copper, iron and zinc in Alzheimer's disease senile plaques
-
Lovell, M. A., J. D. Robertson, W. J. Teesdale, J. L. Campbell, and W. R. Markesbery. 1998. Copper, iron and zinc in Alzheimer's disease senile plaques. J. Neurol. Sci. 158:47-52.
-
(1998)
J. Neurol. Sci
, vol.158
, pp. 47-52
-
-
Lovell, M.A.1
Robertson, J.D.2
Teesdale, W.J.3
Campbell, J.L.4
Markesbery, W.R.5
-
30
-
-
18344414746
-
The Aβ peptide of Alzheimer's disease directly produces hydrogen peroxide through metal ion reduction
-
Huang, X., C. S. Atwood, M. A. Hartshorn, M. A. Multhaup, L. E. Goldstein, R. C. Scarpa, M. P. Cuajungco, D. N. Gray, J. Lim, R. D. Moir, R. E. Tanzi, and A. I. Bush. 1999. The Aβ peptide of Alzheimer's disease directly produces hydrogen peroxide through metal ion reduction. Biochemistry. 38:7609-7616.
-
(1999)
Biochemistry
, vol.38
, pp. 7609-7616
-
-
Huang, X.1
Atwood, C.S.2
Hartshorn, M.A.3
Multhaup, M.A.4
Goldstein, L.E.5
Scarpa, R.C.6
Cuajungco, M.P.7
Gray, D.N.8
Lim, J.9
Moir, R.D.10
Tanzi, R.E.11
Bush, A.I.12
-
31
-
-
0034649237
-
2+ binding sites in the N-terminal domain of the prion protein by EPR and CD spectroscopy
-
2+ binding sites in the N-terminal domain of the prion protein by EPR and CD spectroscopy. Biochemistry. 39:13760-13771.
-
(2000)
Biochemistry
, vol.39
, pp. 13760-13771
-
-
Aronoff-Spencer, E.1
Burns, C.S.2
Avdievich, N.I.3
Gerfen, G.J.4
Peisach, J.5
Antholine, W.E.6
Ball, H.L.7
Cohen, F.E.8
Prusiner, S.B.9
Millhauser, G.L.10
-
32
-
-
18344369706
-
Molecular features of the copper binding sites in the octarepeat domain of the prion protein
-
Burns, C. S., E. Aronoff-Spencer, C. M. Dunham, P. Lario, N. I. Avdievich, W. E. Antholine, M. M. Olmstead, A. Vrielink, G. J. Gerfin, J. Piesach, W. G. Scott, and G. L. Millhauser. 2002. Molecular features of the copper binding sites in the octarepeat domain of the prion protein. Biochemistry. 41:3991-4001.
-
(2002)
Biochemistry
, vol.41
, pp. 3991-4001
-
-
Burns, C.S.1
Aronoff-Spencer, E.2
Dunham, C.M.3
Lario, P.4
Avdievich, N.I.5
Antholine, W.E.6
Olmstead, M.M.7
Vrielink, A.8
Gerfin, G.J.9
Piesach, J.10
Scott, W.G.11
Millhauser, G.L.12
-
33
-
-
0034869693
-
Crystal structure of the human prion protein reveals a mechanism for oligomerization
-
Knaus, K. J., M. Morillas, W. Swietnicki, M. Malone, W. K. Surewicz, and V. C. Yee. 2001. Crystal structure of the human prion protein reveals a mechanism for oligomerization. Nat. Struct. Biol. 8:770-774.
-
(2001)
Nat. Struct. Biol
, vol.8
, pp. 770-774
-
-
Knaus, K.J.1
Morillas, M.2
Swietnicki, W.3
Malone, M.4
Surewicz, W.K.5
Yee, V.C.6
-
34
-
-
0030968277
-
Conformational properties of the prion protein octa-repeat and hydrophobic sequences
-
Smith, C. J., A. F. Drake, B. A. Banfield, G. B. Bloomberg, M. S. Palmer, A. R. Clarke, and J. Collinge. 1997. Conformational properties of the prion protein octa-repeat and hydrophobic sequences. FEBS Lett. 405:378-384.
-
(1997)
FEBS Lett
, vol.405
, pp. 378-384
-
-
Smith, C.J.1
Drake, A.F.2
Banfield, B.A.3
Bloomberg, G.B.4
Palmer, M.S.5
Clarke, A.R.6
Collinge, J.7
-
35
-
-
0031456947
-
Structure of the recombinant full-length hamster prion protein PrP(29-231): The N-terminus is highly flexible
-
Donne, D. G., J. H. Viles, D. Groth, I. Mehlhorn, T. L. James, F. E. Cohen, S. B. Prusiner, P. E. Wright, and H. J. Dyson. 1997. Structure of the recombinant full-length hamster prion protein PrP(29-231): the N-terminus is highly flexible. Proc. Natl. Acad. Sci. USA. 94:13452-13457.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 13452-13457
-
-
Donne, D.G.1
Viles, J.H.2
Groth, D.3
Mehlhorn, I.4
James, T.L.5
Cohen, F.E.6
Prusiner, S.B.7
Wright, P.E.8
Dyson, H.J.9
-
36
-
-
0037470178
-
Copper binding to the octarepeats of the prion protein. Affinity, specificity, folding, and cooperativity: Insights from circular dichroism
-
Garnett, A. P., and J. H. Viles. 2003. Copper binding to the octarepeats of the prion protein. Affinity, specificity, folding, and cooperativity: insights from circular dichroism. J. Biol. Chem. 278:6795-6802.
-
(2003)
J. Biol. Chem
, vol.278
, pp. 6795-6802
-
-
Garnett, A.P.1
Viles, J.H.2
-
37
-
-
0030836511
-
NMR characterization of the full-length recombinant murine prion protein, mPrP(23-231)
-
Riek, R., S. Hornemann, G. Wider, R. Glockshuber, and K. Wüthrich. 1997. NMR characterization of the full-length recombinant murine prion protein, mPrP(23-231). FEBS Lett. 413:282-288.
-
(1997)
FEBS Lett
, vol.413
, pp. 282-288
-
-
Riek, R.1
Hornemann, S.2
Wider, G.3
Glockshuber, R.4
Wüthrich, K.5
-
38
-
-
0012710491
-
NMR solution structure of the human prion protein
-
Zahn, R., A. Liu, T. Luhrs, R. Riek, C. von Schroetter, F. Lopez-Garcia, M. Billeter, L. Calzolai, G. Wider, and K. Wüthrich. 2000. NMR solution structure of the human prion protein. Proc. Natl. Acad. Sci. USA. 97:145-150.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 145-150
-
-
Zahn, R.1
Liu, A.2
Luhrs, T.3
Riek, R.4
von Schroetter, C.5
Lopez-Garcia, F.6
Billeter, M.7
Calzolai, L.8
Wider, G.9
Wüthrich, K.10
-
39
-
-
0033863775
-
NMR studies of model peptides of PHGGGWGQ repeats within the N-terminus of prion proteins: A loop conformation with histidine and tryptophan in close proximity
-
Yoshida, H., N. Matsushima, Y. Kumaki, M. Nakata, and K. Hikichi. 2000. NMR studies of model peptides of PHGGGWGQ repeats within the N-terminus of prion proteins: a loop conformation with histidine and tryptophan in close proximity. J. Biochem. (Tokyo). 128:271-281.
-
(2000)
J. Biochem. (Tokyo)
, vol.128
, pp. 271-281
-
-
Yoshida, H.1
Matsushima, N.2
Kumaki, Y.3
Nakata, M.4
Hikichi, K.5
-
40
-
-
0242662244
-
The octapeptide repeats in mammalian prion protein constitute a pH-dependent folding and aggregation site
-
Zahn, R. 2003. The octapeptide repeats in mammalian prion protein constitute a pH-dependent folding and aggregation site. J. Mol. Biol. 334:477-488.
-
(2003)
J. Mol. Biol
, vol.334
, pp. 477-488
-
-
Zahn, R.1
-
41
-
-
1942519322
-
Conformation of prion protein repeat peptides by FRET measurements and molecular dynamics simulations
-
Gustiananda, M., J. R. Liggins, P. L. Cummins, and J. E. Gready. 2004. Conformation of prion protein repeat peptides by FRET measurements and molecular dynamics simulations. Biophys. J. 86:2467-2483.
-
(2004)
Biophys. J
, vol.86
, pp. 2467-2483
-
-
Gustiananda, M.1
Liggins, J.R.2
Cummins, P.L.3
Gready, J.E.4
-
42
-
-
0037254403
-
Computational studies of Cu(II)[peptide] binding motifs: Cu[HGGG] and Cu[HG] as models for Cu(II) binding to the prion protein octarepeat region
-
Pushie, M. J., and A. Rauk. 2003. Computational studies of Cu(II)[peptide] binding motifs: Cu[HGGG] and Cu[HG] as models for Cu(II) binding to the prion protein octarepeat region. J. Biol. Inorg. Chem. 8:53-65.
-
(2003)
J. Biol. Inorg. Chem
, vol.8
, pp. 53-65
-
-
Pushie, M.J.1
Rauk, A.2
-
43
-
-
24744456323
-
The octarepeat domain of the prion protein binds Cu(II) with three distinct coordination modes at pH 7.4
-
Chattopadhyay, M., E. D. Walter, D. J. Newell, P. J. Jackson, E. Aronoff-Spencer, J. Peisach, G. J. Gerfen, B. Bennett, W. E. Antholine, and G. L. Millhauser. 2005. The octarepeat domain of the prion protein binds Cu(II) with three distinct coordination modes at pH 7.4. J. Am. Chem. Soc. 127:12647-12656.
-
(2005)
J. Am. Chem. Soc
, vol.127
, pp. 12647-12656
-
-
Chattopadhyay, M.1
Walter, E.D.2
Newell, D.J.3
Jackson, P.J.4
Aronoff-Spencer, E.5
Peisach, J.6
Gerfen, G.J.7
Bennett, B.8
Antholine, W.E.9
Millhauser, G.L.10
-
44
-
-
0000189651
-
Density-functional thermochemistry. III. The role of exact exchange
-
Becke, A. D. 1993. Density-functional thermochemistry. III. The role of exact exchange. J. Chem. Phys. 98:5648-5652.
-
(1993)
J. Chem. Phys
, vol.98
, pp. 5648-5652
-
-
Becke, A.D.1
-
45
-
-
85031442467
-
-
Frisch, M. J, Trucks, G. W, Schlegel, H. B, Scuseria, G. E, Robb, M. A, Cheeseman, J. R, Montgomery, Jr, J. A, Vreven, T, Kudin, K. N, Burant, J. C, Millam, J. M, Iyengar, S. S, Tomasi, J, Barone, V, Mennucci, B, Cossi, M, Scalmani, G, Rega, N, Petersson, G. A, Nakatsuji, H, Hada, M, Ehara, M, Toyota, K, Fukuda, R, Hasegawa, J, Ishida, M, Nakajima, T, Honda, Y, Kitao, O, Nakai, H, Klene, M, Li, X, Knox, J. E, Hratchian, H. P, Cross, J. B, Bakken, V, Adamo, C, Jaramillo, J, Gomperts, R, Stratmann, R. E, Yazyev, O, Austin, A. J, Cammi, R, Pomelli, C, Ochterski, J. W, Ayala, P. Y, Morokuma, K, Voth, G. A, Salvador, P, Dannenberg, J. J, Zakrzewski, V. G, Dapprich, S, Daniels, A. D, Strain, M. C, Farkas, O, Malick, D. K, Rabuck, A. D, Raghavachari, K, Foresman, J. B, Ortiz, J. V, Cui, Q, Baboul, A. G, Clifford, S, Cioslowski, J, Stefanov, B. B, Liu, G, Liashenko, A, Piskorz, P, Komaromi, I, Martin, R. L, Fox, D. J, Keit
-
Frisch, M. J., Trucks, G. W., Schlegel, H. B., Scuseria, G. E., Robb, M. A., Cheeseman, J. R., Montgomery, Jr., J. A., Vreven, T., Kudin, K. N., Burant, J. C., Millam, J. M., Iyengar, S. S., Tomasi, J., Barone, V., Mennucci, B., Cossi, M., Scalmani, G., Rega, N., Petersson, G. A., Nakatsuji, H., Hada, M., Ehara, M., Toyota, K., Fukuda, R., Hasegawa, J., Ishida, M., Nakajima, T., Honda, Y., Kitao, O., Nakai, H., Klene, M., Li, X., Knox, J. E., Hratchian, H. P., Cross, J. B., Bakken, V., Adamo, C., Jaramillo, J., Gomperts, R., Stratmann, R. E., Yazyev, O., Austin, A. J., Cammi, R., Pomelli, C., Ochterski, J. W., Ayala, P. Y., Morokuma, K., Voth, G. A., Salvador, P., Dannenberg, J. J., Zakrzewski, V. G., Dapprich, S., Daniels, A. D., Strain, M. C., Farkas, O., Malick, D. K., Rabuck, A. D., Raghavachari, K., Foresman, J. B., Ortiz, J. V., Cui, Q., Baboul, A. G., Clifford, S., Cioslowski, J., Stefanov, B. B., Liu, G., Liashenko, A., Piskorz, P., Komaromi, I., Martin, R. L., Fox, D. J., Keith, T., Al-Laham, M. A., Peng, C. Y., Nanayakkara, A., Challacombe, M., Gill, P. M. W., Johnson, B., Chen, W., Wong, M. W., Gonzalez, C., and Pople, J. A. 2004. Gaussian 03, Revision C.02. Gaussian, Wallingford, CT.
-
-
-
-
46
-
-
84961985847
-
Quantum calculation of molecular energies and energy gradients in solution by a conductor solvent model
-
Barone, V., and M. Cossi. 1998. Quantum calculation of molecular energies and energy gradients in solution by a conductor solvent model. J. Phys. Chem. A. 102:1995-2001.
-
(1998)
J. Phys. Chem. A
, vol.102
, pp. 1995-2001
-
-
Barone, V.1
Cossi, M.2
-
47
-
-
84962349001
-
Energies, structures, and electronic properties of molecules in solution with the C-PCM solvation model
-
Cossi, M., N. Rega, G. Scalmani, and V. Barone. 2003. Energies, structures, and electronic properties of molecules in solution with the C-PCM solvation model. J. Comput. Chem. 24:669-681.
-
(2003)
J. Comput. Chem
, vol.24
, pp. 669-681
-
-
Cossi, M.1
Rega, N.2
Scalmani, G.3
Barone, V.4
-
48
-
-
84913589567
-
Accuracy of free energies of hydration for organic molecules from 6-31G*-derived partial charges
-
Carlson, H. A., T. B. Nguyen, M. Orozco, and W. L. Jorgensen. 1993. Accuracy of free energies of hydration for organic molecules from 6-31G*-derived partial charges. J. Comput. Chem. 10:1240-1249.
-
(1993)
J. Comput. Chem
, vol.10
, pp. 1240-1249
-
-
Carlson, H.A.1
Nguyen, T.B.2
Orozco, M.3
Jorgensen, W.L.4
-
50
-
-
0035789518
-
GROMACS 3.0: A package for molecular simulation and trajectory analysis
-
Lindahl, E., B. Hess, and D. van der Spoel. 2001. GROMACS 3.0: a package for molecular simulation and trajectory analysis. J. Mol. Model. 7:306-317.
-
(2001)
J. Mol. Model
, vol.7
, pp. 306-317
-
-
Lindahl, E.1
Hess, B.2
van der Spoel, D.3
-
51
-
-
0029912748
-
Development and testing of the OPLS all-atom force field on conformational energetics and properties of organic liquids
-
Jorgensen, W. L., D. S. Maxwell, and J. Tirado-Rives. 1996. Development and testing of the OPLS all-atom force field on conformational energetics and properties of organic liquids. J. Am. Chem. Soc. 118:11225-11236.
-
(1996)
J. Am. Chem. Soc
, vol.118
, pp. 11225-11236
-
-
Jorgensen, W.L.1
Maxwell, D.S.2
Tirado-Rives, J.3
-
52
-
-
33750587438
-
Molecular dynamics with coupling to an external bath
-
Berendsen, H. J. C., J. P. M. Postma, A. DiNola, and J. R. Haak. 1984. Molecular dynamics with coupling to an external bath. J. Chem. Phys. 81:3684-3690.
-
(1984)
J. Chem. Phys
, vol.81
, pp. 3684-3690
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
DiNola, A.3
Haak, J.R.4
-
53
-
-
33645961739
-
A smooth particle mesh Ewald method
-
Essman, U., L. Perela, M. L. Berkowitz, T. Darden, H. Lee, and L. G. Pedersen. 1995. A smooth particle mesh Ewald method. J. Chem. Phys. 103:8577-8592.
-
(1995)
J. Chem. Phys
, vol.103
, pp. 8577-8592
-
-
Essman, U.1
Perela, L.2
Berkowitz, M.L.3
Darden, T.4
Lee, H.5
Pedersen, L.G.6
-
54
-
-
84986440341
-
SETTLE: An analytical version of the SHAKE and RATTLE algorithms for rigid water models
-
Miyamoto, S., and P. A. Kollman. 1992. SETTLE: an analytical version of the SHAKE and RATTLE algorithms for rigid water models. J. Comput. Chem. 13:952-962.
-
(1992)
J. Comput. Chem
, vol.13
, pp. 952-962
-
-
Miyamoto, S.1
Kollman, P.A.2
-
55
-
-
0000388705
-
LINCS: A linear constraint solver for molecular simulations
-
Hess, B., H. Bekker, H. J. C. Berendsen, and J. G. E. M. Fraaije. 1997. LINCS: a linear constraint solver for molecular simulations. J. Comput. Chem. 18:1463-1472.
-
(1997)
J. Comput. Chem
, vol.18
, pp. 1463-1472
-
-
Hess, B.1
Bekker, H.2
Berendsen, H.J.C.3
Fraaije, J.G.E.M.4
-
56
-
-
0020997912
-
Dictionary of protein secondary structures: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch, W., and C. Sander. 1983. Dictionary of protein secondary structures: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers. 22:2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
58
-
-
0029881007
-
MOLMOL: A program for display and analysis of macromolecular structures
-
Koradi, R., M. Billeter, and K. Wüthrich. 1996. MOLMOL: a program for display and analysis of macromolecular structures. J. Mol. Graph. 14:51-55.
-
(1996)
J. Mol. Graph
, vol.14
, pp. 51-55
-
-
Koradi, R.1
Billeter, M.2
Wüthrich, K.3
-
59
-
-
0033556236
-
Peptide folding: When simulation meets experiment
-
Daura, X., K. Gademann, B. Jaun, B. Seebach, W. F. van Gunsteren, and A. E. Mark. 1999. Peptide folding: when simulation meets experiment. Angew. Chem. Int. Ed. 38:236-240.
-
(1999)
Angew. Chem. Int. Ed
, vol.38
, pp. 236-240
-
-
Daura, X.1
Gademann, K.2
Jaun, B.3
Seebach, B.4
van Gunsteren, W.F.5
Mark, A.E.6
-
60
-
-
28144449507
-
The influence of different treatments of electrostatic interactions on the thermodynamics of folding of peptides
-
Baumketner, A., and J. Shea. 2005. The influence of different treatments of electrostatic interactions on the thermodynamics of folding of peptides. J. Phys. Chem. B. 109:21322-21328.
-
(2005)
J. Phys. Chem. B
, vol.109
, pp. 21322-21328
-
-
Baumketner, A.1
Shea, J.2
-
61
-
-
1642523682
-
Inter- and intra-octarepeat Cu(II) site geometries in the prion protein: Implications in Cu(II) binding cooperativity and Cu(II)-mediated assemblies
-
Morante, S., R. González-Iglesias, C. Potrich, C. Meneghini, W. Meyer-Klaucke, G. Menestrina, and M. Gassett. 2004. Inter- and intra-octarepeat Cu(II) site geometries in the prion protein: implications in Cu(II) binding cooperativity and Cu(II)-mediated assemblies. J. Biol. Chem. 279:11753-11759.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 11753-11759
-
-
Morante, S.1
González-Iglesias, R.2
Potrich, C.3
Meneghini, C.4
Meyer-Klaucke, W.5
Menestrina, G.6
Gassett, M.7
-
62
-
-
0036015069
-
2+ ions?
-
2+ ions? J. Chem. Soc., Dalton Trans.2269-2274.
-
(2002)
J. Chem. Soc., Dalton Trans
, pp. 2269-2274
-
-
Łuczkowski, M.1
Kozlowski, H.2
Stawikowski, M.3
Rolka, M.4
Gaggelli, E.5
Valensin, D.6
Valensin, G.7
-
63
-
-
20144387902
-
2+ complex
-
2+ complex. Eur. Biophys. J. 34:97-112.
-
(2005)
Eur. Biophys. J
, vol.34
, pp. 97-112
-
-
Mentler, M.1
Weiss, A.2
Grantner, K.3
del Pino, P.4
Deluca, D.5
Fiori, S.6
Renner, C.7
Klaucke, W.M.8
Moroder, L.9
Bertsch, U.10
Kretzschmar, H.A.11
Tavan, P.12
Parak, F.G.13
-
64
-
-
19944429816
-
Are-investigation of copper coordination in the octa-repeats region of the prion protein
-
Bonomo, R. P., V. Cucinotta, A. Giuffrida, G. Impellizzeri, A. Magri, G. Pappalardo, E. Rizzarelli, A. M. Santoro, G. Tabbi, and L. I. Vagliasindi. 2005. Are-investigation of copper coordination in the octa-repeats region of the prion protein. J. Chem. Soc., Dalton Trans.150-158.
-
(2005)
J. Chem. Soc., Dalton Trans
, pp. 150-158
-
-
Bonomo, R.P.1
Cucinotta, V.2
Giuffrida, A.3
Impellizzeri, G.4
Magri, A.5
Pappalardo, G.6
Rizzarelli, E.7
Santoro, A.M.8
Tabbi, G.9
Vagliasindi, L.I.10
-
65
-
-
0004281797
-
-
University Science Books, Mill Valley, CA, pp
-
Lippard, S. J., and J. M. Berg. 1994 Principles of Bioinorganic Chemistry. University Science Books, Mill Valley, CA, pp 29.
-
(1994)
Principles of Bioinorganic Chemistry
, pp. 29
-
-
Lippard, S.J.1
Berg, J.M.2
-
66
-
-
12144291352
-
Micellar environments induce structuring of the N-terminal tail of the prion protein
-
Renner, C., S. Fiori, F. Fiorino, D. Landgraf, D. Deluca, M. Mentler, K. Grantner, F. G. Parak, H. Kretzschmar, and L. Moroder. 2004. Micellar environments induce structuring of the N-terminal tail of the prion protein. Biopolymers. 73:421-433.
-
(2004)
Biopolymers
, vol.73
, pp. 421-433
-
-
Renner, C.1
Fiori, S.2
Fiorino, F.3
Landgraf, D.4
Deluca, D.5
Mentler, M.6
Grantner, K.7
Parak, F.G.8
Kretzschmar, H.9
Moroder, L.10
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