Chloroplast translation regulation

Photosynthesis Research

Volumn 94, Issue 2-3, 2007, Pages 359-374

  Marín Navarro, Julia ^a   Manuell, Andrea L ^a   Wu, Joann ^a   Mayfield, Stephen P ^a  

^a SCRIPPS RESEARCH INSTITUTE   (United States)

Author keywords

Chloroplast ribosome; Chloroplast translation; Cytochrome b 6 f; Light regulated gene expression; Photosystem I; Photosystem II

Indexed keywords

CHLOROPLAST RNA; MESSENGER RNA;

CHLOROPLAST; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; PHOTOSYSTEM I; PHOTOSYSTEM II; PROTEIN SYNTHESIS; REVIEW; RIBOSOME;

CHLOROPLASTS; GENE EXPRESSION REGULATION, PLANT; PHOTOSYSTEM I PROTEIN COMPLEX; PHOTOSYSTEM II PROTEIN COMPLEX; PROTEIN BIOSYNTHESIS; RIBOSOMES; RNA, CHLOROPLAST; RNA, MESSENGER;

BACTERIA (MICROORGANISMS); EUKARYOTA;

EID: 36849008713     PISSN: 01668595     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11120-007-9183-z     Document Type: Review

References (125)

1. Akkaya MS, Breitenberger CA (1992) Light regulation of protein synthesis factor EF-G in pea chloroplasts. Plant Mol Biol 20:791-800
2. Alergand T, Peled-Zehavi H, Katz Y, Danon A (2006) The chloroplast protein disulfide isomerase RB60 Reacts with a regulatory disulfide of the RNA-binding Protein RB47. Plant Cell Physiol 47:540-548
3. Algire MA, Lorsch JR (2006) Where to begin? The mechanism of translation initiation codon selection in eukaryotes. Curr Opin Chem Biol 10:480-486
4. Allen JF (2005) Photosynthesis: the processing of redox signals in chloroplasts. Curr Biol 15:R929-R932
5. Allen JF, Forsberg J (2001) Molecular recognition in thylakoid structure and function. Trends Plant Sci 6:317-326
6. Auchincloss AH, Zerges W, Perron K, Girard-Bascou J, Rochaix JD (2002) Characterization of Tbc2, a nucleus-encoded factor specifically required for translation of the chloroplast psbC mRNA in Chlamydomonas reinhardtii. J Cell Biol 157:953-962
7. Balmer Y, Koller A, Val GD, Schurmann P, Buchanan BB (2004) Proteomics uncovers proteins interacting electrostatically with thioredoxin in chloroplasts. Photosynth Res 79:275-280
8. Barkan A, Goldschmidt-Clermont M (2000) Participation of nuclear genes in chloroplast gene expression. Biochimie 82:559-572
9. Barkan A, Walker M, Nolasco M, Johnson D (1994) A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 13:3170-3181
10. Barnes D, Cohen A, Bruick RK, Kantardjieff K, Fowler S, Efuet E, Mayfield SP (2004) Identification and characterization of a novel RNA binding protein that associates with the 5′-untranslated region of the chloroplast psbA mRNA. Biochemistry 43:8541-8550
11. Barnes D, Franklin S, Schultz J, Henry R, Brown E, Coragliotti A, Mayfield SP (2005) Contribution of 5′- and 3′-untranslated regions of plastid mRNAs to the expression of Chlamydomonas reinhardtii chloroplast genes. Mol Genet Genomics 274:625-636
12. Beligni MV, Yamaguchi K, Mayfield SP (2004a) The translational apparatus of Chlamydomonas reinhardtii chloroplast. Photosynth Res 82:315-325
13. Beligni MV, Yamaguchi K, Mayfield SP (2004b) Chloroplast elongation factor ts pro-protein is an evolutionarily conserved fusion with the s1 domain-containing plastid-specific ribosomal protein-7. Plant Cell 16:3357-3369
14. Bollenbach TJ, Tatman DA, Stern DB (2003) CSP41a, a multifunctional RNA-binding protein, initiates mRNA turnover in tobacco chloroplasts. Plant J 36:842-852
15. Boudreau E, Nickelsen J, Lemaire SD, Ossenbuhl F, Rochaix JD (2000) The Nac2 gene of Chlamydomonas encodes a chloroplast TPR-like protein involved in psbD mRNA stability. EMBO J 19:3366-3376
16. Breidenbach E, Leu S, Michaels A, Boschetti A (1990) Synthesis of EF-Tu and distribution of its mRNA between stroma and thylakoids during the cell cycle of Chlamydomonas reinhardii. Biochim Biophys Acta 1048:209-216
17. Breitenberger CA, Graves MC, Spremulli LL (1979) Evidence for the nuclear location of the gene for chloroplast elongation factor G. Arch Biochem Biophys 194:265-270
18. Bruick RK, Mayfield SP (1998) Processing of the psbA 5′ untranslated region in Chlamydomonas reinhardtii depends upon factors mediating ribosome association. J Cell Biol 143:1145-1153
19. Brutnell TP, Sawers RJ, Mant A, Langdale JA (1999) BUNDLE SHEATH DEFECTIVE2, a novel protein required for post-translational regulation of the rbcL gene of maize. Plant Cell 11:849-864
20. Chen X, Simpson CL, Kindle KL, Stern DB (1997) A dominant mutation in the Chlamydomonas reinhardtii nuclear gene SIM30 suppresses translational defects caused by initiation codon mutations in chloroplast genes. Genetics 145:935-943
21. Choquet Y, Stern DB, Wostrikoff K, Kuras R, Girard-Bascou J, Wollman FA (1998) Translation of cytochrome f is autoregulated through the 5′ untranslated region of petA mRNA in Chlamydomonas chloroplasts. Proc Natl Acad Sci USA 95:4380-4385
22. Cohen I, Knopf JA, Irihimovitch V, Shapira M (2005) A proposed mechanism for the inhibitory effects of oxidative stress on Rubisco assembly and its subunit expression. Plant Physiol 137:738-746
23. Cohen I, Sapir Y, Shapira M (2006) A conserved mechanism controls translation of Rubisco large subunit in different photosynthetic organisms. Plant Physiol 141:1089-1097
24. Danon A (1997) Translational regulation in the chloroplast. Plant Physiol 115:1293-1298
25. Danon A, Mayfield SP (1994) ADP-dependent phosphorylation regulates RNA-binding in vitro: implications in light-modulated translation. EMBO J 13:2227-2235
26. Dauvillee D, Stampacchia O, Girard-Bascou J, Rochaix JD (2003) Tab2 is a novel conserved RNA binding protein required for translation of the chloroplast psaB mRNA. EMBO J 22:6378-6388
27. Drager RG, Higgs DC, Kindle KL, Stern DB (1999) 5′ to 3′ exoribonucleolytic activity is a normal component of chloroplast mRNA decay pathways. Plant J 19:521-531
28. Drapier D, Girard-Bascou J, Wollman FA (1992) Evidence for nuclear control of the expression of the atpA and atpB chloroplast genes in Chlamydomonas. Plant Cell 4:283-295
29. Dresios J, Chappell SA, Zhou W, Mauro VP (2006) An mRNA-rRNA base-pairing mechanism for translation initiation in eukaryotes. Nat Struct Mol Biol 13:30-34
30. Esposito D, Fey JP, Eberhard S, Hicks AJ, Stern DB (2003) In vivo evidence for the prokaryotic model of extended codon-anticodon interaction in translation initiation. EMBO J 22:651-656
31. Fargo DC, Zhang M, Gillham NW, Boynton JE (1998) Shine-Dalgarno-like sequences are not required for translation of chloroplast mRNAs in Chlamydomonas reinhardtii chloroplasts or in Escherichia coli. Mol Gen Genet 257:271-282
32. Fey V, Wagner R, Brautigam K, Pfannschmidt T (2005) Photosynthetic redox control of nuclear gene expression. J Exp Bot 56:1491-1498
33. Fisk DG, Walker MB, Barkan A (1999) Molecular cloning of the maize gene crp1 reveals similarity between regulators of mitochondrial and chloroplast gene expression. EMBO J 18:2621-2630
34. Fox L, Erion J, Tarnowski J, Spremulli L, Brot N, Weissbach H (1980) Euglena gracilis chloroplast EF-Ts. Evidence that it is a nuclear-coded gene product. J Biol Chem 255:6018-6019
35. Friso G, Giacomelli L, Ytterberg AJ, Peltier JB, Rudella A, Sun Q, Wijk KJ (2004) In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database. Plant Cell 16:478-499
36. Girard-Bascou J, Pierre Y, Drapier D (1992) A nuclear mutation affects the synthesis of the chloroplast psbA gene production Chlamydomonas reinhardtii. Curr Genet 22:47-52
37. Gold JC, Spremulli LL (1985) Euglena gracilis chloroplast initiation factor 2. Identification and initial characterization. J Biol Chem 260:14897-14900
38. Groves MR, Mant A, Kuhn A, Koch J, Dubel S, Robinson C, Sinning I (2001) Functional characterization of recombinant chloroplast signal recognition particle. J Biol Chem 276:27778-27786
39. Hauser CR, Gillham NW, Boynton JE (1996) Translational regulation of chloroplast genes. Proteins binding to the 5′-untranslated regions of chloroplast mRNAs in Chlamydomonas reinhardtii. J Biol Chem 271:1486-1497
40. Herrin DL, Nickelsen J (2004) Chloroplast RNA processing and stability. Photosynth Res 82:301-314
41. Higgs DC, Shapiro RS, Kindle KL, Stern DB (1999) Small cis-acting sequences that specify secondary structures in a chloroplast mRNA are essential for RNA stability and translation. Mol Cell Biol 19:8479-8491
42. Hirose T, Sugiura M (1996) Cis-acting elements and trans-acting factors for accurate translation of chloroplast psbA mRNAs: development of an in vitro translation system from tobacco chloroplasts. EMBO J 15:1687-1695
43. Hirose T, Sugiura M (1997) Both RNA editing and RNA cleavage are required for translation of tobacco chloroplast ndhD mRNA: a possible regulatory mechanism for the expression of a chloroplast operon consisting of functionally unrelated genes. EMBO J 16:6804-6811
44. Hirose T, Sugiura M (2004a) Functional Shine-Dalgarno-like sequences for translational initiation of chloroplast mRNAs. Plant Cell Physiol 45:114-117
45. Hirose T, Sugiura M (2004b) Multiple elements required for translation of plastid atpB mRNA lacking the Shine-Dalgarno sequence. Nucleic Acids Res 32:3503-3510
46. Hirose T, Kusumegi T, Sugiura M (1998) Translation of tobacco chloroplast rps14 mRNA depends on a Shine-Dalgarno-like sequence in the 5′-untranslated region but not on internal RNA editing in the coding region. FEBS Lett 430:257-260
47. Kanamaru K, Tanaka K (2004) Roles of chloroplast RNA polymerase sigma factors in chloroplast development and stress response in higher plants. Biosci Biotechnol Biochem 68:2215-2223
48. Katz YS, Danon A (2002) The 3′-untranslated region of chloroplast psbA mRNA stabilizes binding of regulatory proteins to the leader of the message. J Biol Chem 277:18665-18669
49. Kim J, Mayfield SP (1997) Protein disulfide isomerase as a regulator of chloroplast translational activation. Science 278:1954-1957
50. Kim J, Mullet JE (2003) A mechanism for light-induced translation of the rbcL mRNA encoding the large subunit of ribulose-1,5-bisphosphate carboxylase in barley chloroplasts. Plant Cell Physiol 44:491-499
51. Kim J, Klein PG, Mullet JE (1994) Vir-115 gene product is required to stabilize D1 translation intermediates in chloroplasts. Plant Mol Biol 25:459-467
52. Klinkert B, Elles I, Nickelsen J (2006) Translation of chloroplast psbD mRNA in Chlamydomonas is controlled by a secondary RNA structure blocking the AUG start codon. Nucleic Acids Res 34:386-394
53. Komar AA, Hatzoglou M (2005) Internal Ribosome Entry Sites in Cellular mRNAs: mistery of their existence. J Biol Chem 280:23425-23428
54. Kotera E, Tasaka M, Shikanai T (2005) A pentatricopeptide repeat protein is essential for RNA editing in chloroplasts. Nature 433:326-330
55. Kramzar LM, Mueller T, Erickson B, Higgs DC (2006) Regulatory sequences of orthologous petD chloroplast mRNAs are highly specific among Chlamydomonas species. Plant Mol Biol 60:405-422
56. Kraus BL, Spremulli LL (1986) Chloroplast initiation factor 3 from Euglena gracilis. Identification and initial characterization. J Biol Chem 261:4781-4784
57. Kuroda H, Maliga P (2001) Sequences downstream of the translation initiation codon are important determinants of translation efficiency in chloroplasts. Plant Physiol 125:430-436
58. Laidler V, Chaddock AM, Knott TG, Walker D, Robinson C (1995) A SecY homolog in Arabidopsis thaliana. Sequence of a full-length cDNA clone and import of the precursor protein into chloroplasts. J Biol Chem 270:17664-17667
59. Lemaire SD, Guillon B, Le MP, Keryer E, Miginiac-Maslow M, Decottignies P (2004) New thioredoxin targets in the unicellular photosynthetic eukaryote Chlamydomonas reinhardtii. Proc Natl Acad Sci USA 101:7475-7480
60. Malnoe P, Mayfield SP, Rochaix JD (1988) Comparative analysis of the biogenesis of photosystem II in the wild-type and Y-1 mutant of Chlamydomonas reinhardtii. J Cell Biol 106:609-616
61. Mayfield SP, Franklin SE (2005) Expression of human antibodies in eukaryotic micro-algae. Vaccine 23:1828-1832
62. Mayfield SP, Cohen A, Danon A, Yohn CB (1994) Translation of the psbA mRNA of Chlamydomonas reinhardtii requires a structured RNA element contained within the 5′ untranslated region. J Cell Biol 127:1537-1545
63. Mayfield SP, Franklin SE, Lerner RA (2003) Expression and assembly of a fully active antibody in algae. Proc Natl Acad Sci USA 100:438-442
64. McCarthy JE, Gualerzi C (1990) Translational control of prokaryotic gene expression. Trends Genet 6:78-85
65. McCormac DJ, Barkan A (1999) A nuclear gene in maize required for the translation of the chloroplast atpB/E mRNA. Plant Cell 11:1709-1716
66. Merhige PM, Both-Kim D, Robida MD, Hollingsworth MJ (2005) RNA-protein complexes that form in the spinach chloroplast atpI 5′ untranslated region can be divided into two subcomplexes, each comprised of unique cis-elements and trans-factors. Curr Genet 48:256-264
67. Minai L, Wostrikoff K, Wollman FA, Choquet Y (2006) Chloroplast biogenesis of photosystem II cores involves a series of assembly-controlled steps that regulate translation. Plant Cell 18:159-175
68. Monde RA, Schuster G, Stern DB (2000) Processing and degradation of chloroplast mRNA. Biochimie 82:573-582
69. Muhlbauer SK, Eichacker LA (1998) Light-dependent formation of the photosynthetic proton gradient regulates translation elongation in chloroplasts. J Biol Chem 273:20935-20940
70. Muhlbauer SK, Eichacker LA (1999) The stromal protein large subunit of ribulose-1,5-bisphosphate carboxylase is translated by membrane-bound ribosomes. Eur J Biochem 261:784-788
71. Nakamura T, Schuster G, Sugiura M, Sugita M (2004) Chloroplast RNA-binding and pentatricopeptide repeat proteins. Biochem Soc Trans 32:571-574
72. Nickelsen J, Fleischmann M, Boudreau E, Rahire M, Rochaix JD (1999) Identification of cis-acting RNA leader elements required for chloroplast psbD gene expression in Chlamydomonas. Plant Cell 11:957-970
73. Nickelsen J (2003) Chloroplast RNA-binding proteins. Curr Genet 43:392-399
74. Nilsson R, van Wijk KJ (2002) Transient interaction of cpSRP54 with elongating nascent chains of the chloroplast-encoded D1 protein; 'cpSRP54 caught in the act'. FEBS Lett 524:127-133
75. Okuda K, Nakamura T, Sugita M, Shimizu T, Shikanai T (2006) A pentatricopeptide repeat protein is a site-recognition factor in chloroplast RNA editing. J Biol Chem 281:37661-37667
76. Ossenbuhl F, Nickelsen J (2000) cis- and trans-Acting determinants for translation of psbD mRNA in Chlamydomonas reinhardtii. Mol Cell Biol 20:8134-8142
77. Ossenbuhl F, Hartmann K, Nickelsen J (2002) A chloroplast RNA binding protein from stromal thylakoid membranes specifically binds to the 5′ untranslated region of the psbA mRNA. Eur J Biochem 269:3912-3919
78. Pfannschmidt T (2003) Chloroplast redox signals: how photosynthesis controls its own genes. Trends Plant Sci 8:33-41
79. Plader W, Sugiura M (2003) The Shine-Dalgarno-like sequence is a negative regulatory element for translation of tobacco chloroplast rps2 mRNA: an additional mechanism for translational control in chloroplasts. Plant J 34:377-382
80. Rattanachaikunsopon P, Rosch C, Kuchka MR (1999) Cloning and characterization of the nuclear AC115 gene of Chlamydomonas reinhardtii. Plant Mol Biol 39:1-10
81. Reinbothe S, Reinbothe C, Heintzen C, Seidenbecher C, Parthier B (1993) A methyl jasmonate-induced shift in the length of the 5′ untranslated region impairs translation of the plastid rbcL transcript in barley. EMBO J 12:1505-1512
82. Rochaix JD, Kuchka M, Mayfield S, Schirmer-Rahire M, Girard-Bascou J, Bennoun P (1989) Nuclear and chloroplast mutations affect the synthesis or stability of the chloroplast psbC gene product in Chlamydomonas reinhardtii. EMBO J 8:1013-1021
83. Rochaix JD, Perron K, Dauvillee D, Laroche F, Takahashi Y, Goldschmidt-Clermont M (2004) Post-transcriptional steps involved in the assembly of photosystem I in Chlamydomonas. Biochem Soc Trans 32:567-570
84. Rodermel S, Haley J, Jiang CZ, Tsai CH, Bogorad L (1996) A mechanism for intergenomic integration: abundance of ribulose bisphosphate carboxylase small-subunit protein influences the translation of the large-subunit mRNA. Proc Natl Acad Sci USA 93:3881-3885
85. Rosenblad MA, Samuelsson T (2004) Identification of chloroplast signal recognition particle RNA genes. Plant Cell Physiol 45:1633-1639
86. Rott R, Levy H, Drager RG, Stern DB, Schuster G (1998) 3′-Processed mRNA is preferentially translated in Chlamydomonas reinhardtii chloroplasts. Mol Cell Biol 18:4605-4611
87. 6/f complex. Plant J 6:503-512
88. Salvador ML, Klein U (1999) The redox state regulates RNA degradation in the chloroplast of Chlamydomonas reinhardtii. Plant Physiol 121:1367-1374
89. Sane AP, Stein B, Westhoff P (2005) The nuclear gene HCF107 encodes a membrane-associated R-TPR (RNA tetratricopeptide repeat)-containing protein involved in expression of the plastidial psbH gene in Arabidopsis. Plant J 42:720-730
90. Schmitz-Linneweber C, Williams-Carrier R, Barkan A (2005) RNA immunoprecipitation and microarray analysis show a chloroplast Pentatricopeptide repeat protein to be associated with the 5′ region of mRNAs whose translation it activates. Plant Cell 17:2791-2804
91. Schuenemann D, Amin P, Hartmann E, Hoffman NE (1999) Chloroplast SecY is complexed to SecE and involved in the translocation of the 33-kDa but not the 23-kDa subunit of the oxygen-evolving complex. J Biol Chem 274:12177-12182
92. Shapira M, Lers A, Heifetz PB, Irihimovitz V, Osmond CB, Gillham NW, Boynton JE (1997) Differential regulation of chloroplast gene expression in Chlamydomonas reinhardtii during photoacclimation: light stress transiently suppresses synthesis of the Rubisco LSU protein while enhancing synthesis of the PS II D1 protein. Plant Mol Biol 33:1001-1011
93. Shen Y, Danon A, Christopher DA (2001) RNA binding-proteins interact specifically with the Arabidopsis chloroplast psbA mRNA 5′ untranslated region in a redox-dependent manner. Plant Cell Physiol 42:1071-1078
94. Shikanai T (2006) RNA editing in plant organelles: machinery, physiological function and evolution. Cell Mol Life Sci 63:698-708
95. Singh BN, Mishra RN, Agarwal PK, Goswami M, Nair S, Sopory SK, Reddy MK (2004) A pea chloroplast translation elongation factor that is regulated by abiotic factors. Biochem Biophys Res Commun 320:523-530
96. Somanchi A, Barnes D, Mayfield SP (2005) A nuclear gene of Chlamydomonas reinhardtii, Tba1, encodes a putative oxidoreductase required for translation of the chloroplast psbA mRNA. Plant J 42:341-352
97. Sreedharan SP, Beck CM, Spremulli LL (1985) Euglena gracilis chloroplast elongation factor Tu. Purification and initial characterization. J Biol Chem 260:3126-3131
98. Stampacchia O, Girard-Bascou J, Zanasco JL, Zerges W, Bennoun P, Rochaix JD (1997) A nuclear-encoded function essential for translation of the chloroplast psaB mRNA in chlamydomonas. Plant Cell 9:773-782
99. Staub JM, Maliga P (1993) Accumulation of D1 polypeptide in tobacco plastids is regulated via the untranslated region of the psbA mRNA. EMBO J 12:601-606
100. Strand A, Asami T, Alonso J, Ecker JR, Chory J (2003) Chloroplast to nucleus communication triggered by accumulation of Mg-protoporphyrinIX. Nature 421:79-83
101. Trebitsh T, Danon A (2001) Translation of chloroplast psbA mRNA is regulated by signals initiated by both photosystems II and I. Proc Natl Acad Sci USA 98:12289-12294
102. Trebitsh T, Levitan A, Sofer A, Danon A (2000) Translation of chloroplast psbA mRNA is modulated in the light by counteracting oxidizing and reducing activities. Mol Cell Biol 20:1116-1123
103. Trebitsh T, Meiri E, Ostersetzer O, Adam Z, Danon A (2001) The protein disulfide isomerase-like RB60 is partitioned between stroma and thylakoids in Chlamydomonas reinhardtii chloroplasts. J Biol Chem 276:4564-4569
104. Vaistij FE, Goldschmidt-Clermont M, Wostrikoff K, Rochaix JD (2000a) Stability determinants in the chloroplast psbB/T/H mRNAs of Chlamydomonas reinhardtii. Plant J 21:469-482
105. Vaistij FE, Boudreau E, Lemaire SD, Goldschmidt-Clermont M, Rochaix JD (2000b) Characterization of Mbb1, a nucleus-encoded tetratricopeptide-like repeat protein required for expression of the chloroplast psbB/psbT/psbH gene cluster in Chlamydomonas reinhardtii. Proc Natl Acad Sci USA 97:14813-14818
106. Wagner V, Gessner G, Heiland I, Kaminski M, Hawat S, Scheffler K, Mittag M (2006) Analysis of the phosphoproteome of Chlamydomonas reinhardtii provides new insights into various cellular pathways. Eukaryot Cell 5:457-468
107. Wostrikoff K, Choquet Y, Wollman FA, Girard-Bascou J (2001) TCA1, a single nuclear-encoded translational activator specific for petA mRNA in Chlamydomonas reinhardtii chloroplast. Genetics 159:119-132
108. Wostrikoff K, Girard-Bascou J, Wollman FA, Choquet Y (2004) Biogenesis of PSI involves a cascade of translational autoregulation in the chloroplast of Chlamydomonas. EMBO J 23:2696-2705
109. Wu HY, Kuchka MR (1995) A nuclear suppressor overcomes defects in the synthesis of the chloroplast psbD gene product caused by mutations in two distinct nuclear genes of Chlamydomonas. Curr Genet 27:263-269
110. Yamaguchi K, Subramanian AR (2000) The plastid ribosomal proteins. Identification of all the proteins in the 50S subunit of an organelle ribosome (chloroplast). J Biol Chem 275:28466-28482
111. Yamaguchi K, Knoblauch K, Subramanian AR (2000) The plastid ribosomal proteins. Identification of all the proteins in the 30S subunit of an organelle ribosome (chloroplast). J Biol Chem 275:28455-28465
112. Yamaguchi K, Prieto S, Beligni MV, Haynes PA, McDonald WH, Yates JR III, Mayfield SP (2002) Proteomic characterization of the small subunit of Chlamydomonas reinhardtii chloroplast ribosome: identification of a novel S1 domain-containing protein and unusually large orthologs of bacterial S2, S3, and S5. Plant Cell 14:2957-2974
113. Yamaguchi K, Beligni MV, Prieto S, Haynes PA, McDonald WH, Yates JR III, Mayfield SP (2003) Proteomic characterization of the Chlamydomonas reinhardtii chloroplast ribosome. Identification of proteins unique to the 70S ribosome. J Biol Chem 278:33774-33785
114. Yohn CB, Cohen A, Danon A, Mayfield SP (1996) Altered mRNA binding activity and decreased translational initiation in a nuclear mutant lacking translation of the chloroplast psbA mRNA. Mol Cell Biol 16:3560-3566
115. Yohn CB, Cohen A, Rosch C, Kuchka MR, Mayfield SP (1998a) Translation of the chloroplast psbA mRNA requires the nuclear-encoded poly(A)-binding protein, RB47. J Cell Biol 142:435-442
116. Yohn CB, Cohen A, Danon A, Mayfield SP (1998b) A poly(A) binding protein functions in the chloroplast as a message-specific translation factor. Proc Natl Acad Sci USA 95:2238-2243
117. Yosef I, Irihimovitch V, Knopf JA, Cohen I, Orr-Dahan I, Nahum E, Keasar C, Shapira M (2004) RNA binding activity of the ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit from Chlamydomonas reinhardtii. J Biol Chem 279:10148-10156
118. Yukawa M, Kuroda H, Sugiura M (2007) A new in vitro translation system for non-radioactive assay from tobacco chloroplasts: effect of pre-mRNA processing on translation in vitro. Plant J 49:367-376
119. Zerges W (2000) Translation in chloroplasts. Biochimie 82:583-601
120. Zerges W, Rochaix JD (1998) Low density membranes are associated with RNA-binding proteins and thylakoids in the chloroplast of Chlamydomonas reinhardtii. J Cell Biol 140:101-110
121. Zerges W, Girard-Bascou J, Rochaix JD (1997) Translation of the chloroplast psbC mRNA is controlled by interactions between its 5′ leader and the nuclear loci TBC1 and TBC3 in Chlamydomonas reinhardtii. Mol Cell Biol 17:3440-3448
122. Zerges W, Wang S, Rochaix JD (2002) Light activates binding of membrane proteins to chloroplast RNAs in Chlamydomonas reinhardtii. Plant Mol Biol 50:573-585
123. Zerges W, Auchincloss AH, Rochaix JD (2003) Multiple translational control sequences in the 5′ leader of the chloroplast psbC mRNA interact with nuclear gene products in Chlamydomonas reinhardtii. Genetics 163:895-904
124. Zhang L, Paakkarinen V, van Wijk KJ, Aro EM (2000) Biogenesis of the chloroplast-encoded D1 protein: regulation of translation elongation, insertion, and assembly into photosystem II. Plant Cell 12:1769-1782
125. Zhang L, Paakkarinen V, Suorsa M, Aro EM (2001) A SecY homologue is involved in chloroplast-encoded D1 protein biogenesis. J Biol Chem 276:37809-37814